Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli
Arrieta-Ortiz, Mario L, Pan, Min, Kaur, Amardeep, Pepper-Tunick, Evan, Srinivas, Vivek, Dash, Ananya, Immanuel, Selva Rupa Christinal, Brooks, Aaron N, Shepherd, Tyson R, Baliga, Nitin S
Published in mSystems (23.02.2023)
Published in mSystems (23.02.2023)
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Journal Article
Integrated genetic and metabolic landscapes predict vulnerabilities of temozolomide resistant glioblastoma cells
Immanuel, Selva Rupa Christinal, Ghanate, Avinash D., Parmar, Dharmeshkumar S., Yadav, Ritu, Uthup, Riya, Panchagnula, Venkateswarlu, Raghunathan, Anu
Published in NPJ systems biology and applications (08.01.2021)
Published in NPJ systems biology and applications (08.01.2021)
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Journal Article
Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks using PRIME
Immanuel, Selva Rupa Christinal, Arrieta-Ortiz, Mario L., Ruiz, Rene A., Pan, Min, Lopez Garcia de Lomana, Adrian, Peterson, Eliza J. R., Baliga, Nitin S.
Published in NPJ systems biology and applications (06.12.2021)
Published in NPJ systems biology and applications (06.12.2021)
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Journal Article
Origin of biogeographically distinct ecotypes during laboratory evolution
Valenzuela, Jacob J., Immanuel, Selva Rupa Christinal, Wilson, James, Turkarslan, Serdar, Ruiz, Maryann, Gibbons, Sean M., Hunt, Kristopher A., Stopnisek, Nejc, Auer, Manfred, Zemla, Marcin, Stahl, David A., Baliga, Nitin S.
Published in Nature communications (28.08.2024)
Published in Nature communications (28.08.2024)
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Journal Article
History and Future Perspectives on the Discipline of Quantitative Systems Pharmacology Modeling and Its Applications
Azer, Karim, Kaddi, Chanchala D, Barrett, Jeffrey S, Bai, Jane P F, McQuade, Sean T, Merrill, Nathaniel J, Piccoli, Benedetto, Neves-Zaph, Susana, Marchetti, Luca, Lombardo, Rosario, Parolo, Silvia, Immanuel, Selva Rupa Christinal, Baliga, Nitin S
Published in Frontiers in physiology (25.03.2021)
Published in Frontiers in physiology (25.03.2021)
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Journal Article
In vivo commensal control of Clostridioides difficile virulence
Girinathan, Brintha P., DiBenedetto, Nicholas, Worley, Jay N., Peltier, Johann, Arrieta-Ortiz, Mario L., Immanuel, Selva Rupa Christinal, Lavin, Richard, Delaney, Mary L., Cummins, Christopher K., Hoffman, Maria, Luo, Yan, Gonzalez-Escalona, Narjol, Allard, Marc, Onderdonk, Andrew B., Gerber, Georg K., Sonenshein, Abraham L., Baliga, Nitin S., Dupuy, Bruno, Bry, Lynn
Published in Cell host & microbe (10.11.2021)
Published in Cell host & microbe (10.11.2021)
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Journal Article
Reconsidering the in vivo functions of Clostridial Stickland amino acid fermentations
Pavao, Aidan, Graham, Madeline, Arrieta-Ortiz, Mario L, Immanuel, Selva Rupa Christinal, Baliga, Nitin S, Bry, Lynn
Published in Anaerobe (01.08.2022)
Published in Anaerobe (01.08.2022)
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Journal Article
Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile
Arrieta-Ortiz, Mario L., Immanuel, Selva Rupa Christinal, Turkarslan, Serdar, Wu, Wei-Ju, Girinathan, Brintha P., Worley, Jay N., DiBenedetto, Nicholas, Soutourina, Olga, Peltier, Johann, Dupuy, Bruno, Bry, Lynn, Baliga, Nitin S.
Published in Cell host & microbe (10.11.2021)
Published in Cell host & microbe (10.11.2021)
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Journal Article
Transcriptome signature of cell viability predicts drug response and drug interaction in Mycobacterium tuberculosis
Srinivas, Vivek, Ruiz, Rene A., Pan, Min, Immanuel, Selva Rupa Christinal, Peterson, Eliza J.R., Baliga, Nitin S.
Published in Cell reports methods (20.12.2021)
Published in Cell reports methods (20.12.2021)
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Journal Article
Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks of Mycobacterium tuberculosis
Selva Rupa Christinal Immanuel, Arrieta-Ortiz, Mario L, Ruiz, Rene A, Pan, Min, Adrian Lopez Garcia De Lomana, Peterson, Eliza J R, Baliga, Nitin S
Published in bioRxiv (31.01.2021)
Published in bioRxiv (31.01.2021)
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Paper
The mechanisms of in vivo commensal control of Clostridioides difficile virulence
Girinathan, Brintha P, Dibenedetto, Nick, Worley, Jay N, Peltier, Johann, Arrieta-Ortiz, Mario, Selva Rupa Christinal Immanuel, Lavin, Richard, Delaney, Mary L, Cummins, Christopher, Onderdonk, Andrew B, Gerber, Georg K, Sonenshein, Abraham L, Baliga, Nitin, Dupuy, Bruno, Bry, Lynn
Published in bioRxiv (03.05.2021)
Published in bioRxiv (03.05.2021)
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Paper
Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile
Arrieta-Ortiz, Mario L, Selva Rupa Christinal Immanuel, Turkarslan, Serdar, Wu, Wei Ju, Girinathan, Brintha P, Worley, Jay N, Dibenedetto, Nicholas, Soutourina, Olga, Peltier, Johann, Dupuy, Bruno, Bry, Lynn, Baliga, Nitin S
Published in bioRxiv (15.09.2020)
Published in bioRxiv (15.09.2020)
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Paper