ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol-induced lipid body formation
Gold, Elizabeth S, Ramsey, Stephen A, Sartain, Mark J, Selinummi, Jyrki, Podolsky, Irina, Rodriguez, David J, Moritz, Robert L, Aderem, Alan
Published in The Journal of experimental medicine (09.04.2012)
Published in The Journal of experimental medicine (09.04.2012)
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Journal Article
Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
Ruusuvuori, Pekka, Aijö, Tarmo, Chowdhury, Sharif, Garmendia-Torres, Cecilia, Selinummi, Jyrki, Birbaumer, Mirko, Dudley, Aimée M, Pelkmans, Lucas, Yli-Harja, Olli
Published in BMC bioinformatics (13.05.2010)
Published in BMC bioinformatics (13.05.2010)
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Journal Article
Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images
Selinummi, Jyrki, Ruusuvuori, Pekka, Podolsky, Irina, Ozinsky, Adrian, Gold, Elizabeth, Yli-Harja, Olli, Aderem, Alan, Shmulevich, Ilya
Published in PloS one (22.10.2009)
Published in PloS one (22.10.2009)
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Journal Article
Software for quantification of labeled bacteria from digital microscope images by automated image analysis
Selinummi, Jyrki, Seppälä, Jenni, Yli-Harja, Olli, Puhakka, Jaakko A
Published in BioTechniques (01.12.2005)
Published in BioTechniques (01.12.2005)
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Journal Article
Computational Framework for Simulating Fluorescence Microscope Images With Cell Populations
Lehmussola, A., Ruusuvuori, P., Selinummi, J., Huttunen, H., Yli-Harja, O.
Published in IEEE transactions on medical imaging (01.07.2007)
Published in IEEE transactions on medical imaging (01.07.2007)
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Journal Article
Cholesterol supports the retinoic acid-induced synaptic vesicle formation in differentiating human SH-SY5Y neuroblastoma cells
Sarkanen, Jertta-Riina, Nykky, Jonna, Siikanen, Jutta, Selinummi, Jyrki, Ylikomi, Timo, Jalonen, Tuula O
Published in Journal of neurochemistry (01.09.2007)
Published in Journal of neurochemistry (01.09.2007)
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Journal Article
Segmentation of Folds in Tissue Section Images
Palokangas, S., Selinummi, J., Yli-Harja, O.
Published in 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (01.01.2007)
Published in 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (01.01.2007)
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Conference Proceeding
Journal Article
Image-based feedback control for real-time sorting of microspheres in a microfluidic device
Munson, Matthew S, Spotts, James M, Niemistö, Antti, Selinummi, Jyrki, Kralj, Jason G, Salit, Marc L, Ozinsky, Adrian
Published in Lab on a chip (21.09.2010)
Published in Lab on a chip (21.09.2010)
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Journal Article
Synthetic Images of High-Throughput Microscopy for Validation of Image Analysis Methods
Lehmussola, Antti, Ruusuvuori, Pekka, Selinummi, Jyrki, Rajala, Tiina, Yli-Harja, Olli
Published in Proceedings of the IEEE (01.08.2008)
Published in Proceedings of the IEEE (01.08.2008)
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Journal Article
Computational tools for assessing the properties of 2D neural cell cultures
Acimovic, Jugoslava, Teppola, Heidi, Selinummi, Jyrki, Linne, Marja-Leena
Published in BMC neuroscience (13.07.2009)
Published in BMC neuroscience (13.07.2009)
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Journal Article
Image-based feedback control for real-time sorting of microspheres in a microfluidic devicePublished as part of a special issue dedicated to Emerging Investigators: Guest Editors: Aaron Wheeler and Amy Herr.Electronic supplementary information (ESI) available: Matlab scripts used for image processing and AVI movie of sorter operation. See DOI: 10.1039/c004708b
Munson, Matthew S, Spotts, James M, Niemistö, Antti, Selinummi, Jyrki, Kralj, Jason G, Salit, Marc L, Ozinsky, Adrian
Year of Publication 25.08.2010
Year of Publication 25.08.2010
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Journal Article
Quantification of vesicles in differentiating human SH-SY5Y neuroblastoma cells by automated image analysis
Selinummi, Jyrki, Sarkanen, Jertta-Riina, Niemistö, Antti, Linne, Marja-Leena, Ylikomi, Timo, Yli-Harja, Olli, Jalonen, Tuula O.
Published in Neuroscience letters (27.03.2006)
Published in Neuroscience letters (27.03.2006)
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Journal Article
Benchmark set of synthetic images for validating cell image analysis algorithms
Ruusuvuori, Pekka, Lehmussola, Antti, Selinummi, Jyrki, Rajala, Tiina, Huttunen, Heikki, Yli-Harja, Olli
Published in 2008 16th European Signal Processing Conference (01.08.2008)
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Published in 2008 16th European Signal Processing Conference (01.08.2008)
Conference Proceeding
Automated analysis of images using bright field microscopy
SELINUMMI JYRKI JUHANI, RUUSUVUORI PEKKA, SHMULEVICH ILYA, OZINSKY ADRIAN
Year of Publication 03.06.2014
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Year of Publication 03.06.2014
Patent