SMURF: Genomic mapping of fungal secondary metabolite clusters
Khaldi, Nora, Seifuddin, Fayaz T., Turner, Geoff, Haft, Daniel, Nierman, William C., Wolfe, Kenneth H., Fedorova, Natalie D.
Published in Fungal genetics and biology (01.09.2010)
Published in Fungal genetics and biology (01.09.2010)
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Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing
Xiao, Wenming, Ren, Luyao, Chen, Zhong, Fang, Li Tai, Zhao, Yongmei, Lack, Justin, Guan, Meijian, Zhu, Bin, Jaeger, Erich, Kerrigan, Liz, Blomquist, Thomas M., Hung, Tiffany, Sultan, Marc, Idler, Kenneth, Lu, Charles, Scherer, Andreas, Kusko, Rebecca, Moos, Malcolm, Xiao, Chunlin, Sherry, Stephen T., Abaan, Ogan D., Chen, Wanqiu, Chen, Xin, Nordlund, Jessica, Liljedahl, Ulrika, Maestro, Roberta, Polano, Maurizio, Drabek, Jiri, Vojta, Petr, Kõks, Sulev, Reimann, Ene, Madala, Bindu Swapna, Mercer, Timothy, Miller, Chris, Jacob, Howard, Truong, Tiffany, Moshrefi, Ali, Natarajan, Aparna, Granat, Ana, Schroth, Gary P., Kalamegham, Rasika, Peters, Eric, Petitjean, Virginie, Walton, Ashley, Shen, Tsai-Wei, Talsania, Keyur, Vera, Cristobal Juan, Langenbach, Kurt, de Mars, Maryellen, Hipp, Jennifer A., Willey, James C., Wang, Jing, Shetty, Jyoti, Kriga, Yuliya, Raziuddin, Arati, Tran, Bao, Zheng, Yuanting, Yu, Ying, Cam, Margaret, Jailwala, Parthav, Nguyen, Cu, Meerzaman, Daoud, Chen, Qingrong, Yan, Chunhua, Ernest, Ben, Mehra, Urvashi, Jensen, Roderick V., Jones, Wendell, Li, Jian-Liang, Papas, Brian N., Pirooznia, Mehdi, Chen, Yun-Ching, Seifuddin, Fayaz, Li, Zhipan, Liu, Xuelu, Resch, Wolfgang, Wang, Jingya, Wu, Leihong, Yavas, Gokhan, Miles, Corey, Ning, Baitang, Tong, Weida, Mason, Christopher E., Donaldson, Eric, Lababidi, Samir, Staudt, Louis M., Tezak, Zivana, Hong, Huixiao, Wang, Charles, Shi, Leming
Published in Nature biotechnology (01.09.2021)
Published in Nature biotechnology (01.09.2021)
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In vivo functional analysis of non-conserved human lncRNAs associated with cardiometabolic traits
Ruan, Xiangbo, Li, Ping, Chen, Yi, Shi, Yu, Pirooznia, Mehdi, Seifuddin, Fayaz, Suemizu, Hiroshi, Ohnishi, Yasuyuki, Yoneda, Nao, Nishiwaki, Megumi, Shepherdson, James, Suresh, Abhilash, Singh, Komudi, Ma, Yonghe, Jiang, Cheng-fei, Cao, Haiming
Published in Nature communications (02.01.2020)
Published in Nature communications (02.01.2020)
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Circulating mitochondrial DNA is a proinflammatory DAMP in sickle cell disease
Tumburu, Laxminath, Ghosh-Choudhary, Shohini, Seifuddin, Fayaz T., Barbu, Emilia A., Yang, Simon, Ahmad, Maliha M., Wilkins, Lauren H.W., Tunc, Ilker, Sivakumar, Ishwarya, Nichols, James S., Dagur, Pradeep K., Yang, Shutong, Almeida, Luis E.F., Quezado, Zenaide M.N., Combs, Christian A., Lindberg, Eric, Bleck, Christopher K.E., Zhu, Jun, Shet, Arun S., Chung, Jay H., Pirooznia, Mehdi, Thein, Swee Lay
Published in Blood (03.06.2021)
Published in Blood (03.06.2021)
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Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways
Zandi, Peter P., Jaffe, Andrew E., Goes, Fernando S., Burke, Emily E., Collado-Torres, Leonardo, Huuki-Myers, Louise, Seyedian, Arta, Lin, Yian, Seifuddin, Fayaz, Pirooznia, Mehdi, Ross, Christopher A., Kleinman, Joel E., Weinberger, Daniel R., Hyde, Thomas M.
Published in Nature neuroscience (01.03.2022)
Published in Nature neuroscience (01.03.2022)
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Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection
Singh, Komudi, Chen, Yun-Ching, Hassanzadeh, Shahin, Han, Kim, Judy, Jennifer T, Seifuddin, Fayaz, Tunc, Ilker, Sack, Michael N, Pirooznia, Mehdi
Published in Frontiers in genetics (16.03.2021)
Published in Frontiers in genetics (16.03.2021)
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lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA
Seifuddin, Fayaz, Singh, Komudi, Suresh, Abhilash, Judy, Jennifer T., Chen, Yun-Ching, Chaitankar, Vijender, Tunc, Ilker, Ruan, Xiangbo, Li, Ping, Chen, Yi, Cao, Haiming, Lee, Richard S., Goes, Fernando S., Zandi, Peter P., Jafri, M. Saleet, Pirooznia, Mehdi
Published in Scientific data (05.10.2020)
Published in Scientific data (05.10.2020)
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Cell-free DNA maps COVID-19 tissue injury and risk of death and can cause tissue injury
Andargie, Temesgen E, Tsuji, Naoko, Seifuddin, Fayaz, Jang, Moon Kyoo, Yuen, Peter St, Kong, Hyesik, Tunc, Ilker, Singh, Komudi, Charya, Ananth, Wilkins, Kenneth, Nathan, Steven, Cox, Andrea, Pirooznia, Mehdi, Star, Robert A, Agbor-Enoh, Sean
Published in JCI insight (08.04.2021)
Published in JCI insight (08.04.2021)
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Implementation of the Methyl-Seq platform to identify tissue- and sex-specific DNA methylation differences in the rat epigenome
Cox, Olivia H., Seifuddin, Fayaz, Guo, Jeffrey, Pirooznia, Mehdi, Boersma, Gretha J., Wang, Josh, Tamashiro, Kellie L.K., Lee, Richard S.
Published in Epigenetics (31.12.2024)
Published in Epigenetics (31.12.2024)
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Acetylation-mediated remodeling of the nucleolus regulates cellular acetyl-CoA responses
Houston, Ryan, Sekine, Shiori, Calderon, Michael J, Seifuddin, Fayaz, Wang, Guanghui, Kawagishi, Hiroyuki, Malide, Daniela A, Li, Yuesheng, Gucek, Marjan, Pirooznia, Mehdi, Nelson, Alissa J, Stokes, Matthew P, Stewart-Ornstein, Jacob, Mullett, Steven J, Wendell, Stacy G, Watkins, Simon C, Finkel, Toren, Sekine, Yusuke
Published in PLoS biology (01.11.2020)
Published in PLoS biology (01.11.2020)
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Glucocorticoid Receptor regulates protein chaperone, circadian clock and affective disorder genes in the zebrafish brain
Eachus, Helen, Oberski, Lara, Paveley, Jack, Bacila, Irina, Ashton, John-Paul, Esposito, Umberto, Seifuddin, Fayaz, Pirooznia, Mehdi, Elhaik, Eran, Placzek, Marysia, Krone, Nils, Cunliffe, Vincent T
Published in Disease models & mechanisms (01.09.2023)
Published in Disease models & mechanisms (01.09.2023)
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Genome-wide Methyl-Seq analysis of blood-brain targets of glucocorticoid exposure
Seifuddin, Fayaz, Wand, Gary, Cox, Olivia, Pirooznia, Mehdi, Moody, Laura, Yang, Xiaoju, Tai, Jonathan, Boersma, Gretha, Tamashiro, Kellie, Zandi, Peter, Lee, Richard
Published in Epigenetics (03.08.2017)
Published in Epigenetics (03.08.2017)
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Systematic review of genome-wide gene expression studies of bipolar disorder
Seifuddin, Fayaz, Pirooznia, Mehdi, Judy, Jennifer T, Goes, Fernando S, Potash, James B, Zandi, Peter P
Published in BMC psychiatry (15.08.2013)
Published in BMC psychiatry (15.08.2013)
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Genetic variants of PKLR are associated with acute pain in sickle cell disease
Wang, Xunde, Gardner, Kate, Tegegn, Mickias B., Dalgard, Clifton L., Alba, Camille, Menzel, Stephan, Patel, Hamel, Pirooznia, Mehdi, Fu, Yi-Ping, Seifuddin, Fayaz T., Thein, Swee Lay
Published in Blood advances (14.06.2022)
Published in Blood advances (14.06.2022)
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Early Myeloid Derived Suppressor Cells (eMDSCs) Are Associated With High Donor Myeloid Chimerism Following Haploidentical HSCT for Sickle Cell Disease
Bhat, Deepali K, Olkhanud, Purevdorj B, Gangaplara, Arunakumar, Seifuddin, Fayaz, Pirooznia, Mehdi, Biancotto, Angélique, Fantoni, Giovanna, Pittman, Corinne, Francis, Berline, Dagur, Pradeep K, Saxena, Ankit, McCoy, J Philip, Pfeiffer, Ruth M, Fitzhugh, Courtney D
Published in Frontiers in immunology (30.11.2021)
Published in Frontiers in immunology (30.11.2021)
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Neutrophil Subsets, Platelets, and Vascular Disease in Psoriasis
Teague, Heather L., PhD, Varghese, Nevin J., BS, Tsoi, Lam C., PhD, Dey, Amit K., MD, Garshick, Michael S., MD, Silverman, Joanna I., BA, Baumer, Yvonne, PhD, Harrington, Charlotte L., BA, Stempinski, Erin, MS, Elnabawi, Youssef A., BS, Dagur, Pradeep K., PhD, Cui, Kairong, PhD, Tunc, Ilker, PhD, Seifuddin, Fayaz, MSc, Joshi, Aditya A., MD, Stansky, Elena, BS, Purmalek, Monica M., BS, Rodante, Justin A., PA, Keel, Andrew, DNP, Aridi, Tarek Z., BS, Carmona-Rivera, Carmelo, PhD, Sanda, Gregory E., BS, Chen, Marcus Y., MD, Pirooznia, Mehdi, MD, PhD, McCoy, J. Philip, PhD, Gelfand, Joel M., MD, Zhao, Keji, PhD, Gudjonsson, Johann E., MD, PhD, Playford, Martin P., PhD, Kaplan, Mariana J., MD, Berger, Jeffrey S., MD, Mehta, Nehal N., MD
Published in JACC. Basic to translational science (01.02.2019)
Published in JACC. Basic to translational science (01.02.2019)
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βT87Q-Globin Gene Therapy Reduces Sickle Hemoglobin Production, Allowing for Ex Vivo Anti-sickling Activity in Human Erythroid Cells
Demirci, Selami, Gudmundsdottir, Bjorg, Li, Quan, Haro-Mora, Juan J., Nassehi, Tina, Drysdale, Claire, Yapundich, Morgan, Gamer, Jackson, Seifuddin, Fayaz, Tisdale, John F., Uchida, Naoya
Published in Molecular therapy. Methods & clinical development (12.06.2020)
Published in Molecular therapy. Methods & clinical development (12.06.2020)
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Adaptation of the CHARM DNA methylation platform for the rat genome reveals novel brain region-specific differences
Lee, Richard S., Tamashiro, Kellie L.K., Aryee, Martin J., Murakami, Peter, Seifuddin, Fayaz, Herb, Brian, Huo, Yuqing, Rongione, Michael, Feinberg, Andrew P., Moran, Timothy H., Potash, James B.
Published in Epigenetics (01.11.2011)
Published in Epigenetics (01.11.2011)
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