Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments
Tian, Luyi, Dong, Xueyi, Freytag, Saskia, Lê Cao, Kim-Anh, Su, Shian, JalalAbadi, Abolfazl, Amann-Zalcenstein, Daniela, Weber, Tom S., Seidi, Azadeh, Jabbari, Jafar S., Naik, Shalin H., Ritchie, Matthew E.
Published in Nature methods (01.06.2019)
Published in Nature methods (01.06.2019)
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Journal Article
Gradient biomaterials for soft-to-hard interface tissue engineering
Seidi, Azadeh, Ramalingam, Murugan, Elloumi-Hannachi, Imen, Ostrovidov, Serge, Khademhosseini, Ali
Published in Acta biomaterialia (01.04.2011)
Published in Acta biomaterialia (01.04.2011)
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Journal Article
scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data
Tian, Luyi, Su, Shian, Dong, Xueyi, Amann-Zalcenstein, Daniela, Biben, Christine, Seidi, Azadeh, Hilton, Douglas J, Naik, Shalin H, Ritchie, Matthew E
Published in PLoS computational biology (01.08.2018)
Published in PLoS computational biology (01.08.2018)
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Journal Article
Elucidating the mitochondrial proteome of Toxoplasma gondii reveals the presence of a divergent cytochrome c oxidase
Seidi, Azadeh, Muellner-Wong, Linden S, Rajendran, Esther, Tjhin, Edwin T, Dagley, Laura F, Aw, Vincent Yt, Faou, Pierre, Webb, Andrew I, Tonkin, Christopher J, van Dooren, Giel G
Published in eLife (11.09.2018)
Published in eLife (11.09.2018)
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Journal Article
Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure
Shoguchi, Eiichi, Shinzato, Chuya, Kawashima, Takeshi, Gyoja, Fuki, Mungpakdee, Sutada, Koyanagi, Ryo, Takeuchi, Takeshi, Hisata, Kanako, Tanaka, Makiko, Fujiwara, Mayuki, Hamada, Mayuko, Seidi, Azadeh, Fujie, Manabu, Usami, Takeshi, Goto, Hiroki, Yamasaki, Shinichi, Arakaki, Nana, Suzuki, Yutaka, Sugano, Sumio, Toyoda, Atsushi, Kuroki, Yoko, Fujiyama, Asao, Medina, Mónica, Coffroth, Mary Alice, Bhattacharya, Debashish, Satoh, Nori
Published in Current biology (05.08.2013)
Published in Current biology (05.08.2013)
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Journal Article
SHP2 Tyrosine Phosphatase Converts Parafibromin/Cdc73 from a Tumor Suppressor to an Oncogenic Driver
Takahashi, Atsushi, Tsutsumi, Ryouhei, Kikuchi, Ippei, Obuse, Chikashi, Saito, Yasuhiro, Seidi, Azadeh, Karisch, Robert, Fernandez, Minerva, Cho, Taewoo, Ohnishi, Naomi, Rozenblatt-Rosen, Orit, Meyerson, Matthew, Neel, Benjamin G., Hatakeyama, Masanori
Published in Molecular cell (08.07.2011)
Published in Molecular cell (08.07.2011)
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Journal Article
Controlled Release of Drugs from Gradient Hydrogels for High-Throughput Analysis of Cell–Drug Interactions
Ostrovidov, Serge, Annabi, Nasim, Seidi, Azadeh, Ramalingam, Murugan, Dehghani, Fariba, Kaji, Hirokazu, Khademhosseini, Ali
Published in Analytical chemistry (Washington) (07.02.2012)
Published in Analytical chemistry (Washington) (07.02.2012)
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Journal Article
Legionella pneumophila Strain 130b Evades Macrophage Cell Death Independent of the Effector SidF in the Absence of Flagellin
Speir, Mary, Vogrin, Adam, Seidi, Azadeh, Abraham, Gilu, Hunot, Stéphane, Han, Qingqing, Dorn, 2nd, Gerald W, Masters, Seth L, Flavell, Richard A, Vince, James E, Naderer, Thomas
Published in Frontiers in cellular and infection microbiology (16.02.2017)
Published in Frontiers in cellular and infection microbiology (16.02.2017)
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Journal Article
A key cytosolic iron–sulfur cluster synthesis protein localizes to the mitochondrion of Toxoplasma gondii
Aw, Yi Tong Vincent, Seidi, Azadeh, Hayward, Jenni A., Lee, Jiwon, Makota, F. Victor, Rug, Melanie, Dooren, Giel G.
Published in Molecular microbiology (01.05.2021)
Published in Molecular microbiology (01.05.2021)
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Journal Article
Targeting NLRP3 and Staphylococcal pore‐forming toxin receptors in human‐induced pluripotent stem cell‐derived macrophages
Chow, Seong H., Deo, Pankaj, Yeung, Amy T. Y., Kostoulias, Xenia P., Jeon, Yusun, Gao, Mei‐Ling, Seidi, Azadeh, Olivier, Françios Alwyn Benson, Sridhar, Sushmita, Nethercott, Cara, Cameron, David, Robertson, Avril A. B., Robert, Remy, Mackay, Charles R., Traven, Ana, Jin, Zi‐Bing, Hale, Christine, Dougan, Gordon, Peleg, Anton Y., Naderer, Thomas
Published in Journal of leukocyte biology (01.09.2020)
Published in Journal of leukocyte biology (01.09.2020)
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Journal Article
Gradient nanofiber scaffolds for tissue engineering
Seidi, Azadeh, Sampathkumar, Kaarunya, Srivastava, Alok, Ramakrishna, Seeram, Ramalingam, Murugan
Published in Journal of nanoscience and nanotechnology (01.07.2013)
Published in Journal of nanoscience and nanotechnology (01.07.2013)
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Journal Article
Micro- and Nanoengineering Approaches to Developing Gradient Biomaterials Suitable for Interface Tissue Engineering
Ostrovidov, Serge, Seidi, Azadeh, Ahadian, Samad, Ramalingam, Murugan, Khademhosseini, Ali
Published in Micro and Nanotechnologies in Engineering Stem Cells and Tissues (01.01.2013)
Published in Micro and Nanotechnologies in Engineering Stem Cells and Tissues (01.01.2013)
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Book Chapter
Recombination System Based on Cre [alpha] Complementation and Leucine Zipper Fusions
Seidi, Azadeh, Mie, Masayasu, Kobatake, Eiry
Published in Applied biochemistry and biotechnology (01.08.2009)
Published in Applied biochemistry and biotechnology (01.08.2009)
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Journal Article
Recombination System Based on Cre α Complementation and Leucine Zipper Fusions
Seidi, Azadeh, Mie, Masayasu, Kobatake, Eiry
Published in Applied biochemistry and biotechnology (01.08.2009)
Published in Applied biochemistry and biotechnology (01.08.2009)
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Journal Article
Protocols for Biomaterial Scaffold Fabrication
Seidi, Azadeh, Ramalingam, Murugan
Published in Integrated Biomaterials in Tissue Engineering (2012)
Published in Integrated Biomaterials in Tissue Engineering (2012)
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Book Chapter
Cell Patterning Technologies for Tissue Engineering
Seidi, Azadeh, Ramalingam, Murugan
Published in Biomedical Materials and Diagnostic Devices (24.09.2012)
Published in Biomedical Materials and Diagnostic Devices (24.09.2012)
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Book Chapter