Validation of genomic and transcriptomic models of homologous recombination deficiency in a real-world pan-cancer cohort
Leibowitz, Benjamin D, Dougherty, Bonnie V, Bell, Joshua S K, Kapilivsky, Joshuah, Michuda, Jackson, Sedgewick, Andrew J, Munson, Wesley A, Chandra, Tushar A, Dry, Jonathan R, Beaubier, Nike, Igartua, Catherine, Taxter, Timothy
Published in BMC cancer (28.05.2022)
Published in BMC cancer (28.05.2022)
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Journal Article
Learning mixed graphical models with separate sparsity parameters and stability-based model selection
Sedgewick, Andrew J, Shi, Ivy, Donovan, Rory M, Benos, Panayiotis V
Published in BMC bioinformatics (06.06.2016)
Published in BMC bioinformatics (06.06.2016)
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Journal Article
Large scale, robust, and accurate whole transcriptome profiling from clinical formalin-fixed paraffin-embedded samples
Newton, Yulia, Sedgewick, Andrew J, Cisneros, Luis, Golovato, Justin, Johnson, Mark, Szeto, Christopher W, Rabizadeh, Shahrooz, Sanborn, J Zachary, Benz, Stephen Charles, Vaske, Charles
Published in Scientific reports (19.10.2020)
Published in Scientific reports (19.10.2020)
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Journal Article
Mixed graphical models for integrative causal analysis with application to chronic lung disease diagnosis and prognosis
Sedgewick, Andrew J, Buschur, Kristina, Shi, Ivy, Ramsey, Joseph D, Raghu, Vineet K, Manatakis, Dimitris V, Zhang, Yingze, Bon, Jessica, Chandra, Divay, Karoleski, Chad, Sciurba, Frank C, Spirtes, Peter, Glymour, Clark, Benos, Panayiotis V
Published in Bioinformatics (01.04.2019)
Published in Bioinformatics (01.04.2019)
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Journal Article
Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation
Liu, Yale, Cook, Christopher, Sedgewick, Andrew J., Zhang, Shuyi, Fassett, Marlys S., Ricardo-Gonzalez, Roberto R., Harirchian, Paymann, Kashem, Sakeen W., Hanakawa, Sho, Leistico, Jacob R., North, Jeffrey P., Taylor, Mark A., Zhang, Wei, Man, Mao-Qiang, Charruyer, Alexandra, Beliakova-Bethell, Nadejda, Benz, Stephen C., Ghadially, Ruby, Mauro, Theodora M., Kaplan, Daniel H., Kabashima, Kenji, Choi, Jaehyuk, Song, Jun S., Cho, Raymond J., Cheng, Jeffrey B.
Published in iScience (23.10.2020)
Published in iScience (23.10.2020)
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Journal Article
A Genomic Analysis of Esophageal Squamous Cell Carcinoma in Eastern Africa
Van Loon, Katherine, Mmbaga, Elia J, Mushi, Beatrice P, Selekwa, Msiba, Mwanga, Ally, Akoko, Larry Onyango, Mwaiselage, Julius, Mosha, Innocent, Ng, Dianna L, Wu, Wei, Silverstein, Jordyn, Mulima, Gift, Kaimila, Bongani, Gopal, Satish, Snell, Jeff M, Benz, Stephen C, Vaske, Charles, Sanborn, Zack, Sedgewick, Andrew J, Radenbaugh, Amie, Newton, Yulia, Collisson, Eric A
Published in Cancer epidemiology, biomarkers & prevention (02.10.2023)
Published in Cancer epidemiology, biomarkers & prevention (02.10.2023)
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Journal Article
Data-Independent Acquisition Mass Spectrometry To Quantify Protein Levels in FFPE Tumor Biopsies for Molecular Diagnostics
Kim, Yeoun Jin, Sweet, Steve M. M, Egertson, Jarrett D, Sedgewick, Andrew J, Woo, Sunghee, Liao, Wei-li, Merrihew, Gennifer E, Searle, Brian C, Vaske, Charlie, Heaton, Robert, MacCoss, Michael J, Hembrough, Todd
Published in Journal of proteome research (04.01.2019)
Published in Journal of proteome research (04.01.2019)
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Journal Article
PARP1 rs1805407 Increases Sensitivity to PARP1 Inhibitors in Cancer Cells Suggesting an Improved Therapeutic Strategy
Abecassis, Irina, Sedgewick, Andrew J, Romkes, Marjorie, Buch, Shama, Nukui, Tomoko, Kapetanaki, Maria G, Vogt, Andreas, Kirkwood, John M, Benos, Panayiotis V, Tawbi, Hussein
Published in Scientific reports (01.03.2019)
Published in Scientific reports (01.03.2019)
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Journal Article
Regional Molecular Signature of the Symptomatic Atherosclerotic Carotid Plaque
Caparosa, Ellen M, Sedgewick, Andrew J, Zenonos, Georgios, Zhao, Yin, Carlisle, Diane L, Stefaneanu, Lucia, Jankowitz, Brian T, Gardner, Paul, Chang, Yue-Fang, Lariviere, William R, LaFramboise, William A, Benos, Panayiotis V, Friedlander, Robert M
Published in Neurosurgery (01.08.2019)
Published in Neurosurgery (01.08.2019)
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Journal Article
A20 and ABIN1 Suppression of a Keratinocyte Inflammatory Program with a Shared Single-Cell Expression Signature in Diverse Human Rashes
Harirchian, Paymann, Lee, Jerry, Hilz, Stephanie, Sedgewick, Andrew J., Perez White, Bethany E., Kesling, Michael J., Mully, Thaddeus, Golovato, Justin, Gray, Matthew, Mauro, Theodora M., Purdom, Elizabeth, Kim, Esther A., Sbitany, Hani, Bhutani, Tina, Vaske, Charles J., Benz, Stephen C., Cho, Raymond J., Cheng, Jeffrey B.
Published in Journal of investigative dermatology (01.06.2019)
Published in Journal of investigative dermatology (01.06.2019)
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Journal Article
Learning subgroup-specific regulatory interactions and regulator independence with PARADIGM
Sedgewick, Andrew J, Benz, Stephen C, Rabizadeh, Shahrooz, Soon-Shiong, Patrick, Vaske, Charles J
Published in Bioinformatics (01.07.2013)
Published in Bioinformatics (01.07.2013)
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Journal Article
MDS에서 AML으로의 전이 및 이의 예측 방법(MDS TO AML TRANSITION AND PREDICTION METHODS THEREFOR)
BENZ STEPHEN CHARLES, NGUYEN ANDREW, SZETO CHRISTOPHER, SEDGEWICK ANDREW J
Year of Publication 03.07.2019
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Year of Publication 03.07.2019
Patent
Abstract 4980: T-cell receptor clonotyping and immune infiltrate quantification with whole transcriptome RNA-seq from FFPE
Sedgewick, Andrew J., Adashek, Jacob J., Szeto, Christopher W., Vaske, Charles J., Spiess, Philippe E., Benz, Stephen C.
Published in Cancer research (Chicago, Ill.) (15.08.2020)
Published in Cancer research (Chicago, Ill.) (15.08.2020)
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Journal Article
Abstract 778: Potential drug targets for adenoid cystic carcinoma elucidated by proteogenomic analysis
Thyparambil, Sheeno P., Kim, Yeoun Jin, Chambers, Andrew G., Yan, Dongyao, Sellappan, Shankar, Sedgewick, Andrew J., Newton, Yulia, Sanborn, J Zachary, Vaske, Charles J., Benz, Stephen C., Cecchi, Fabiola, Kang, Hyunseok, Hembrough, Todd A.
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Journal Article