Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling
Rockett, Rebecca J., Arnott, Alicia, Lam, Connie, Sadsad, Rosemarie, Timms, Verlaine, Gray, Karen-Ann, Eden, John-Sebastian, Chang, Sheryl, Gall, Mailie, Draper, Jenny, Sim, Eby M., Bachmann, Nathan L., Carter, Ian, Basile, Kerri, Byun, Roy, O’Sullivan, Matthew V., Chen, Sharon C-A, Maddocks, Susan, Sorrell, Tania C., Dwyer, Dominic E., Holmes, Edward C., Kok, Jen, Prokopenko, Mikhail, Sintchenko, Vitali
Published in Nature medicine (01.09.2020)
Published in Nature medicine (01.09.2020)
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Journal Article
Off-season RSV epidemics in Australia after easing of COVID-19 restrictions
Eden, John-Sebastian, Sikazwe, Chisha, Xie, Ruopeng, Deng, Yi-Mo, Sullivan, Sheena G., Michie, Alice, Levy, Avram, Cutmore, Elena, Blyth, Christopher C., Britton, Philip N., Crawford, Nigel, Dong, Xiaomin, Dwyer, Dominic E., Edwards, Kimberly M., Horsburgh, Bethany A., Foley, David, Kennedy, Karina, Minney-Smith, Cara, Speers, David, Tulloch, Rachel L., Holmes, Edward C., Dhanasekaran, Vijaykrishna, Smith, David W., Kok, Jen, Barr, Ian G.
Published in Nature communications (24.05.2022)
Published in Nature communications (24.05.2022)
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Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
Bull, Rowena A., Adikari, Thiruni N., Ferguson, James M., Hammond, Jillian M., Stevanovski, Igor, Beukers, Alicia G., Naing, Zin, Yeang, Malinna, Verich, Andrey, Gamaarachchi, Hasindu, Kim, Ki Wook, Luciani, Fabio, Stelzer-Braid, Sacha, Eden, John-Sebastian, Rawlinson, William D., van Hal, Sebastiaan J., Deveson, Ira W.
Published in Nature communications (09.12.2020)
Published in Nature communications (09.12.2020)
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Journal Article
The evolutionary history of vertebrate RNA viruses
Shi, Mang, Lin, Xian-Dan, Chen, Xiao, Tian, Jun-Hua, Chen, Liang-Jun, Li, Kun, Wang, Wen, Eden, John-Sebastian, Shen, Jin-Jin, Liu, Li, Holmes, Edward C., Zhang, Yong-Zhen
Published in Nature (London) (01.04.2018)
Published in Nature (London) (01.04.2018)
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Journal Article
Extensive Diversity of RNA Viruses in Australian Ticks
Harvey, Erin, Rose, Karrie, Eden, John-Sebastian, Lo, Nathan, Abeyasuriya, Thilanka, Shi, Mang, Doggett, Stephen L, Holmes, Edward C
Published in Journal of virology (01.02.2019)
Published in Journal of virology (01.02.2019)
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Journal Article
Redefining the invertebrate RNA virosphere
Shi, Mang, Lin, Xian-Dan, Tian, Jun-Hua, Chen, Liang-Jun, Chen, Xiao, Li, Ci-Xiu, Qin, Xin-Cheng, Li, Jun, Cao, Jian-Ping, Eden, John-Sebastian, Buchmann, Jan, Wang, Wen, Xu, Jianguo, Holmes, Edward C., Zhang, Yong-Zhen
Published in Nature (London) (22.12.2016)
Published in Nature (London) (22.12.2016)
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Journal Article
Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes
Marcelino, Vanessa R, Wille, Michelle, Hurt, Aeron C, González-Acuña, Daniel, Klaassen, Marcel, Schlub, Timothy E, Eden, John-Sebastian, Shi, Mang, Iredell, Jonathan R, Sorrell, Tania C, Holmes, Edward C
Published in BMC biology (08.04.2019)
Published in BMC biology (08.04.2019)
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Journal Article
Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian disease
Charon, Justine, Grigg, Matthew J, Eden, John-Sebastian, Piera, Kim A, Rana, Hafsa, William, Timothy, Rose, Karrie, Davenport, Miles P, Anstey, Nicholas M, Holmes, Edward C
Published in PLoS pathogens (01.12.2019)
Published in PLoS pathogens (01.12.2019)
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Journal Article
Recombination within the Pandemic Norovirus GII.4 Lineage
Eden, John-Sebastian, Tanaka, Mark M, Boni, Maciej F, Rawlinson, William D, White, Peter A
Published in Journal of Virology (01.06.2013)
Published in Journal of Virology (01.06.2013)
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Journal Article
Novel Hendra Virus Variant Detected by Sentinel Surveillance of Horses in Australia
Annand, Edward J, Horsburgh, Bethany A, Xu, Kai, Reid, Peter A, Poole, Ben, de Kantzow, Maximillian C, Brown, Nicole, Tweedie, Alison, Michie, Michelle, Grewar, John D, Jackson, Anne E, Singanallur, Nagendrakumar B, Plain, Karren M, Kim, Karan, Tachedjian, Mary, van der Heide, Brenda, Crameri, Sandra, Williams, David T, Secombe, Cristy, Laing, Eric D, Sterling, Spencer, Yan, Lianying, Jackson, Louise, Jones, Cheryl, Plowright, Raina K, Peel, Alison J, Breed, Andrew C, Diallo, Ibrahim, Dhand, Navneet K, Britton, Philip N, Broder, Christopher C, Smith, Ina, Eden, John-Sebastian
Published in Emerging infectious diseases (01.03.2022)
Published in Emerging infectious diseases (01.03.2022)
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Journal Article
No detectable effect of Wolbachia wMel on the prevalence and abundance of the RNA virome of Drosophila melanogaster
Shi, Mang, White, Vanessa L., Schlub, Timothy, Eden, John-Sebastian, Hoffmann, Ary A., Holmes, Edward C.
Published in Proceedings of the Royal Society. B, Biological sciences (25.07.2018)
Published in Proceedings of the Royal Society. B, Biological sciences (25.07.2018)
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Journal Article
Identification of Genetically Intact HIV-1 Proviruses in Specific CD4+ T Cells from Effectively Treated Participants
Hiener, Bonnie, Horsburgh, Bethany A., Eden, John-Sebastian, Barton, Kirston, Schlub, Timothy E., Lee, Eunok, von Stockenstrom, Susanne, Odevall, Lina, Milush, Jeffrey M., Liegler, Teri, Sinclair, Elizabeth, Hoh, Rebecca, Boritz, Eli A., Douek, Daniel, Fromentin, Rémi, Chomont, Nicolas, Deeks, Steven G., Hecht, Frederick M., Palmer, Sarah
Published in Cell reports (Cambridge) (17.10.2017)
Published in Cell reports (Cambridge) (17.10.2017)
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Journal Article
Early English Performance: Medi Eval Plays and Robin Hood Games by John Marshall (review)
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Book Review
Metagenomic Identification of Viral Sequences in Laboratory Reagents
Porter, Ashleigh F, Cobbin, Joanna, Li, Ci-Xiu, Eden, John-Sebastian, Holmes, Edward C
Published in Viruses (21.10.2021)
Published in Viruses (21.10.2021)
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Journal Article
New Detection of Locally Acquired Japanese Encephalitis Virus Using Clinical Metagenomics, New South Wales, Australia
Maamary, Joel, Maddocks, Susan, Barnett, Yael, Wong, Stephen, Rodriguez, Michael, Hueston, Linda, Jeoffreys, Neisha, Eden, John-Sebastian, Dwyer, Dominic E, Floyd, Tony, Plit, Marshall, Kok, Jen, Brew, Bruce
Published in Emerging infectious diseases (01.03.2023)
Published in Emerging infectious diseases (01.03.2023)
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Journal Article
A Divergent Hepatitis D-Like Agent in Birds
Wille, Michelle, Netter, Hans J, Littlejohn, Margaret, Yuen, Lilly, Shi, Mang, John-Sebastian, Eden, Klaassen, Marcel, Holmes, Edward C, Hurt, Aeron C
Published in Viruses (17.12.2018)
Published in Viruses (17.12.2018)
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