Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
Ward, Naomi L, Challacombe, Jean F, Janssen, Peter H, Henrissat, Bernard, Coutinho, Pedro M, Wu, Martin, Xie, Gary, Haft, Daniel H, Sait, Michelle, Badger, Jonathan, Barabote, Ravi D, Bradley, Brent, Brettin, Thomas S, Brinkac, Lauren M, Bruce, David, Creasy, Todd, Daugherty, Sean C, Davidsen, Tanja M, DeBoy, Robert T, Detter, J. Chris, Dodson, Robert J, Durkin, A. Scott, Ganapathy, Anuradha, Gwinn-Giglio, Michelle, Han, Cliff S, Khouri, Hoda, Kiss, Hajnalka, Kothari, Sagar P, Madupu, Ramana, Nelson, Karen E, Nelson, William C, Paulsen, Ian, Penn, Kevin, Ren, Qinghu, Rosovitz, M.J, Selengut, Jeremy D, Shrivastava, Susmita, Sullivan, Steven A, Tapia, Roxanne, Thompson, L. Sue, Watkins, Kisha L, Yang, Qi, Yu, Chunhui, Zafar, Nikhat, Zhou, Liwei, Kuske, Cheryl R
Published in Applied and Environmental Microbiology (01.04.2009)
Published in Applied and Environmental Microbiology (01.04.2009)
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Streptococcus pneumoniae in the heart subvert the host response through biofilm-mediated resident macrophage killing
Shenoy, Anukul T, Brissac, Terry, Gilley, Ryan P, Kumar, Nikhil, Wang, Yong, Gonzalez-Juarbe, Norberto, Hinkle, Whitney S, Daugherty, Sean C, Shetty, Amol C, Ott, Sandra, Tallon, Luke J, Deshane, Jessy, Tettelin, Hervé, Orihuela, Carlos J
Published in PLoS pathogens (01.08.2017)
Published in PLoS pathogens (01.08.2017)
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Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli
Hazen, Tracy H., Michalski, Jane, Luo, Qingwei, Shetty, Amol C., Daugherty, Sean C., Fleckenstein, James M., Rasko, David A.
Published in Scientific reports (14.06.2017)
Published in Scientific reports (14.06.2017)
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Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination
Budroni, Sonia, Siena, Emilio, Hotopp, Julie C. Dunning, Seib, Kate L., Serruto, Davide, Nofroni, Chiara, Comanducci, Maurizio, Riley, David R., Daugherty, Sean C., Angiuoli, Samuel V., Covacci, Antonello, Pizza, Mariagrazia, Rappuoli, Rino, Moxon, E. Richard, Tettelin, Hervé, Medini, Duccio
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2011)
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Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis
Lin, Mingqun, Xiong, Qingming, Chung, Matthew, Daugherty, Sean C, Nagaraj, Sushma, Sengamalay, Naomi, Ott, Sandra, Godinez, Al, Tallon, Luke J, Sadzewicz, Lisa, Fraser, Claire, Dunning Hotopp, Julie C, Rikihisa, Yasuko
Published in BMC genomics (06.01.2021)
Published in BMC genomics (06.01.2021)
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Genome Analysis of Multiple Pathogenic Isolates of Streptococcus agalactiae: Implications for the Microbial "Pan-Genome"
Tettelin, Hervé, Masignani, Vega, Cieslewicz, Michael J., Donati, Claudio, Medini, Duccio, Ward, Naomi L., Angiuoli, Samuel V., Crabtree, Jonathan, Jones, Amanda L., Durkin, A. Scott, DeBoy, Robert T., Davidsen, Tanja M., Mora, Marirosa, Scarselli, Maria, Immaculada Margarit y Ros, Peterson, Jeremy D., Hauser, Christopher R., Sundaram, Jaideep P., Nelson, William C., Madupu, Ramana, Brinkac, Lauren M., Dodson, Robert J., Rosovitz, Mary J., Sullivan, Steven A., Daugherty, Sean C., Haft, Daniel H., Selengut, Jeremy, Gwinn, Michelle L., Zhou, Liwei, Zafar, Nikhat, Khouri, Hoda, Radune, Diana, Dimitrov, George, Watkins, Kisha, Kevin J. B. O'Connor, Smith, Shannon, Utterback, Teresa R., White, Owen, Rubens, Craig E., Grandi, Guido, Madoff, Lawrence C., Kasper, Dennis L., Telford, John L., Wessels, Michael R., Rappuoli, Rino, Fraser, Claire M.
Published in Proceedings of the National Academy of Sciences - PNAS (27.09.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (27.09.2005)
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Transcriptional attenuation controls macrolide inducible efflux and resistance in Streptococcus pneumoniae and in other Gram-positive bacteria containing mef/mel(msr(D)) elements
Chancey, Scott T, Bai, Xianhe, Kumar, Nikhil, Drabek, Elliott F, Daugherty, Sean C, Colon, Thomas, Ott, Sandra, Sengamalay, Naomi, Sadzewicz, Lisa, Tallon, Luke J, Fraser, Claire M, Tettelin, Hervé, Stephens, David S
Published in PloS one (19.02.2015)
Published in PloS one (19.02.2015)
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Neuraminidase A-Exposed Galactose Promotes Streptococcus pneumoniae Biofilm Formation during Colonization
Blanchette, Krystle A, Shenoy, Anukul T, Milner, 2nd, Jeffrey, Gilley, Ryan P, McClure, Erin, Hinojosa, Cecilia A, Kumar, Nikhil, Daugherty, Sean C, Tallon, Luke J, Ott, Sandra, King, Samantha J, Ferreira, Daniela M, Gordon, Stephen B, Tettelin, Hervé, Orihuela, Carlos J
Published in Infection and immunity (01.10.2016)
Published in Infection and immunity (01.10.2016)
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High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks
Tettelin, Hervé, Davidson, Rebecca M, Agrawal, Sonia, Aitken, Moira L, Shallom, Shamira, Hasan, Nabeeh A, Strong, Michael, de Moura, Vinicius Calado Nogueira, De Groote, Mary Ann, Duarte, Rafael S, Hine, Erin, Parankush, Sushma, Su, Qi, Daugherty, Sean C, Fraser, Claire M, Brown-Elliott, Barbara A, Wallace, Jr, Richard J, Holland, Steven M, Sampaio, Elizabeth P, Olivier, Kenneth N, Jackson, Mary, Zelazny, Adrian M
Published in Emerging infectious diseases (01.03.2014)
Published in Emerging infectious diseases (01.03.2014)
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Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicillin-Resistant Staphylococcus epidermidis Strain
GILL, Steven R, FOUTS, Derrick E, DODSON, Robert J, DAUGHERTY, Sean C, MADUPU, Ramana, ANGIUOLI, Samuel V, DURKIN, A. Scott, HAFT, Daniel H, VAMATHEVAN, Jessica, KHOURI, Hoda, UTTERBACK, Terry, LEE, Chris, ARCHER, Gordon L, DIMITROV, George, LINGXIA JIANG, HAIYING QIN, JAN WEIDMAN, TRAN, Kevin, KANG, Kathy, HANCE, Ioana R, NELSON, Karen E, FRASER, Claire M, MONGODIN, Emmanuel F, DEBOY, Robert T, RAVEL, Jacques, PAULSEN, Ian T, KOLONAY, James F, BRINKAC, Lauren, BEANAN, Mauren
Published in Journal of Bacteriology (01.04.2005)
Published in Journal of Bacteriology (01.04.2005)
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Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters
Wu, Dongying, Daugherty, Sean C, Van Aken, Susan E, Pai, Grace H, Watkins, Kisha L, Khouri, Hoda, Tallon, Luke J, Zaborsky, Jennifer M, Dunbar, Helen E, Tran, Phat L, Moran, Nancy A, Eisen, Jonathan A
Published in PLoS biology (01.06.2006)
Published in PLoS biology (01.06.2006)
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Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1
Mongodin, Emmanuel F, Shapir, Nir, Daugherty, Sean C, DeBoy, Robert T, Emerson, Joanne B, Shvartzbeyn, Alla, Radune, Diana, Vamathevan, Jessica, Riggs, Florenta, Grinberg, Viktoria, Khouri, Hoda, Wackett, Lawrence P, Nelson, Karen E, Sadowsky, Michael J
Published in PLoS genetics (01.12.2006)
Published in PLoS genetics (01.12.2006)
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Comparative genomics of emerging human ehrlichiosis agents
Dunning Hotopp, Julie C, Lin, Mingqun, Madupu, Ramana, Crabtree, Jonathan, Angiuoli, Samuel V, Eisen, Jonathan A, Eisen, Jonathan, Seshadri, Rekha, Ren, Qinghu, Wu, Martin, Utterback, Teresa R, Smith, Shannon, Lewis, Matthew, Khouri, Hoda, Zhang, Chunbin, Niu, Hua, Lin, Quan, Ohashi, Norio, Zhi, Ning, Nelson, William, Brinkac, Lauren M, Dodson, Robert J, Rosovitz, M J, Sundaram, Jaideep, Daugherty, Sean C, Davidsen, Tanja, Durkin, Anthony S, Gwinn, Michelle, Haft, Daniel H, Selengut, Jeremy D, Sullivan, Steven A, Zafar, Nikhat, Zhou, Liwei, Benahmed, Faiza, Forberger, Heather, Halpin, Rebecca, Mulligan, Stephanie, Robinson, Jeffrey, White, Owen, Rikihisa, Yasuko, Tettelin, Hervé
Published in PLoS genetics (01.02.2006)
Published in PLoS genetics (01.02.2006)
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The Psychrophilic Lifestyle as Revealed by the Genome Sequence of Colwellia psychrerythraea 34H through Genomic and Proteomic Analyses
Methé, Barbara A., Nelson, Karen E., Deming, Jody W., Momen, Bahram, Melamud, Eugene, Zhang, Xijun, Moult, John, Madupu, Ramana, Nelson, William C., Dodson, Robert J., Brinkac, Lauren M., Daugherty, Sean C., Durkin, Anthony S., DeBoy, Robert T., Kolonay, James F., Sullivan, Steven A., Zhou, Liwei, Davidsen, Tanja M., Wu, Martin, Huston, Adrienne L., Lewis, Matthew, Weaver, Bruce, Weidman, Janice F., Khouri, Hoda, Utterback, Terry R., Feldblyum, Tamara V., Fraser, Claire M.
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2005)
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Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species
Fouts, Derrick E, Mongodin, Emmanuel F, Mandrell, Robert E, Miller, William G, Rasko, David A, Ravel, Jacques, Brinkac, Lauren M, DeBoy, Robert T, Parker, Craig T, Daugherty, Sean C, Dodson, Robert J, Durkin, A. Scott, Madupu, Ramana, Sullivan, Steven A, Shetty, Jyoti U, Ayodeji, Mobolanle A, Shvartsbeyn, Alla, Schatz, Michael C, Badger, Jonathan H, Fraser, Claire M, Nelson, Karen E
Published in PLoS biology (01.01.2005)
Published in PLoS biology (01.01.2005)
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The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough
Heidelberg, John F, Seshadri, Rekha, Haveman, Shelley A, Hemme, Christopher L, Paulsen, Ian T, Kolonay, James F, Eisen, Jonathan A, Ward, Naomi, Methe, Barbara, Brinkac, Lauren M, Daugherty, Sean C, Deboy, Robert T, Dodson, Robert J, Durkin, A Scott, Madupu, Ramana, Nelson, William C, Sullivan, Steven A, Fouts, Derrick, Haft, Daniel H, Selengut, Jeremy, Peterson, Jeremy D, Davidsen, Tanja M, Zafar, Nikhat, Zhou, Liwei, Radune, Diana, Dimitrov, George, Hance, Mark, Tran, Kevin, Khouri, Hoda, Gill, John, Utterback, Terry R, Feldblyum, Tamara V, Wall, Judy D, Voordouw, Gerrit, Fraser, Claire M
Published in Nature biotechnology (01.05.2004)
Published in Nature biotechnology (01.05.2004)
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Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens
Myers, Garry S A, Rasko, David A, Cheung, Jackie K, Ravel, Jacques, Seshadri, Rekha, DeBoy, Robert T, Ren, Qinghu, Varga, John, Awad, Milena M, Brinkac, Lauren M, Daugherty, Sean C, Haft, Daniel H, Dodson, Robert J, Madupu, Ramana, Nelson, William C, Rosovitz, M J, Sullivan, Steven A, Khouri, Hoda, Dimitrov, George I, Watkins, Kisha L, Mulligan, Stephanie, Benton, Jonathan, Radune, Diana, Fisher, Derek J, Atkins, Helen S, Hiscox, Tom, Jost, B Helen, Billington, Stephen J, Songer, J Glenn, McClane, Bruce A, Titball, Richard W, Rood, Julian I, Melville, Stephen B, Paulsen, Ian T
Published in Genome Research (01.08.2006)
Published in Genome Research (01.08.2006)
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Genome Sequence of Synechococcus CC9311: Insights into Adaptation to a Coastal Environment
Palenik, Brian, Ren, Qinghu, Dupont, Chris L., Myers, Garry S., Heidelberg, John F., Badger, Jonathan H., Madupu, Ramana, Nelson, William C., Brinkac, Lauren M., Dodson, Robert J., Durkin, A. Scott, Daugherty, Sean C., Sullivan, Stephen A., Khouri, Hoda, Mohamoud, Yasmin, Halpin, Rebecca, Paulsen, Ian T.
Published in Proceedings of the National Academy of Sciences - PNAS (05.09.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (05.09.2006)
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Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
Moran, Mary Ann, Buchan, Alison, González, José M, Heidelberg, John F, Whitman, William B, Kiene, Ronald P, Henriksen, James R, King, Gary M, Belas, Robert, Fuqua, Clay, Brinkac, Lauren, Lewis, Matt, Johri, Shivani, Weaver, Bruce, Pai, Grace, Eisen, Jonathan A, Rahe, Elisha, Sheldon, Wade M, Ye, Wenying, Miller, Todd R, Carlton, Jane, Rasko, David A, Paulsen, Ian T, Ren, Qinghu, Daugherty, Sean C, Deboy, Robert T, Dodson, Robert J, Durkin, A. Scott, Madupu, Ramana, Nelson, William C, Sullivan, Steven A, Rosovitz, M. J, Haft, Daniel H, Selengut, Jeremy, Ward, Naomi
Published in Nature (16.12.2004)
Published in Nature (16.12.2004)
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Whole-Genome Sequence Analysis of Pseudomonas syringae pv. phaseolicola 1448A Reveals Divergence among Pathovars in Genes Involved in Virulence and Transposition
JOARDAR, Vinita, LINDEBERG, Magdalen, MADUPU, Ramana, NELSON, William C, ROSOVITZ, M. J, SULLIVAN, Steven, CRABTREE, Jonathan, CREASY, Todd, DAVIDSEN, Tanja, HAFT, Dan H, ZAFAR, Nikhat, LIWEI ZHOU, JACKSON, Robert W, HALPIN, Rebecca, HOLLEY, Tara, KHOURI, Hoda, FELDBLYUM, Tamara, WHITE, Owen, FRASER, Claire M, CHATTERJEE, Arun K, CARTINHOUR, Sam, SCHNEIDER, David J, MANSFIELD, John, SELENGUT, Jeremy, COLLMER, Alan, BUELL, C. Robin, DODSON, Robert, BRINKAC, Lauren M, DAUGHERTY, Sean C, DEBOY, Robert, DURKIN, A. Scott, GIGLIO, Michelle Gwinn
Published in Journal of Bacteriology (01.09.2005)
Published in Journal of Bacteriology (01.09.2005)
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