Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps
Chen, Bob, Scurrah, Cherie’ R., McKinley, Eliot T., Simmons, Alan J., Ramirez-Solano, Marisol A., Zhu, Xiangzhu, Markham, Nicholas O., Heiser, Cody N., Vega, Paige N., Rolong, Andrea, Kim, Hyeyon, Sheng, Quanhu, Drewes, Julia L., Zhou, Yuan, Southard-Smith, Austin N., Xu, Yanwen, Ro, James, Jones, Angela L., Revetta, Frank, Berry, Lynne D., Niitsu, Hiroaki, Islam, Mirazul, Pelka, Karin, Hofree, Matan, Chen, Jonathan H., Sarkizova, Siranush, Ng, Kimmie, Giannakis, Marios, Boland, Genevieve M., Aguirre, Andrew J., Anderson, Ana C., Rozenblatt-Rosen, Orit, Regev, Aviv, Hacohen, Nir, Kawasaki, Kenta, Sato, Toshiro, Goettel, Jeremy A., Grady, William M., Zheng, Wei, Washington, M. Kay, Cai, Qiuyin, Sears, Cynthia L., Goldenring, James R., Franklin, Jeffrey L., Su, Timothy, Huh, Won Jae, Vandekar, Simon, Roland, Joseph T., Liu, Qi, Coffey, Robert J., Shrubsole, Martha J., Lau, Ken S.
Published in Cell (22.12.2021)
Published in Cell (22.12.2021)
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Journal Article
Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms
Southard-Smith, Austin N, Simmons, Alan J, Chen, Bob, Jones, Angela L, Ramirez Solano, Marisol A, Vega, Paige N, Scurrah, Cherie' R, Zhao, Yue, Brenan, Michael J, Xuan, Jiekun, Shrubsole, Martha J, Porter, Ely B, Chen, Xi, Brenan, Colin J H, Liu, Qi, Quigley, Lauren N M, Lau, Ken S
Published in BMC genomics (02.07.2020)
Published in BMC genomics (02.07.2020)
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Journal Article
DSS-induced damage to basement membranes is repaired by matrix replacement and crosslinking
Howard, Angela M, LaFever, Kimberly S, Fenix, Aidan M, Scurrah, Cherie' R, Lau, Ken S, Burnette, Dylan T, Bhave, Gautam, Ferrell, Nicholas, Page-McCaw, Andrea
Published in Journal of cell science (01.04.2019)
Published in Journal of cell science (01.04.2019)
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Journal Article
Cytometry‐based single‐cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF‐α‐induced apoptosis in vivo
Simmons, Alan J, Banerjee, Amrita, McKinley, Eliot T, Scurrah, Cherie' R, Herring, Charles A, Gewin, Leslie S, Masuzaki, Ryota, Karp, Seth J, Franklin, Jeffrey L, Gerdes, Michael J, Irish, Jonathan M, Coffey, Robert J, Lau, Ken S
Published in Molecular systems biology (01.10.2015)
Published in Molecular systems biology (01.10.2015)
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Journal Article
Cytometry‐based single‐cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF‐α‐induced apoptosis in vivo
Simmons, Alan J, Banerjee, Amrita, McKinley, Eliot T, Scurrah, Cherie’ R, Herring, Charles A, Gewin, Leslie S, Masuzaki, Ryota, Karp, Seth J, Franklin, Jeffrey L, Gerdes, Michael J, Irish, Jonathan M, Coffey, Robert J, Lau, Ken S
Published in Molecular systems biology (01.08.2016)
Published in Molecular systems biology (01.08.2016)
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Journal Article
Clinically adaptable polymer enables simultaneous spatial analysis of colonic tissues and biofilms
Macedonia, Mary C., Drewes, Julia L., Markham, Nicholas O., Simmons, Alan J., Roland, Joseph T., Vega, Paige N., Scurrah, Cherie’ R., Coffey, Robert J., Shrubsole, Martha J., Sears, Cynthia L., Lau, Ken S.
Published in NPJ biofilms and microbiomes (24.09.2020)
Published in NPJ biofilms and microbiomes (24.09.2020)
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Journal Article
Impaired coordination between signaling pathways is revealed in human colorectal cancer using single-cell mass cytometry of archival tissue blocks
Simmons, Alan J, Scurrah, Cherié R, McKinley, Eliot T, Herring, Charles A, Irish, Jonathan M, Washington, M Kay, Coffey, Robert J, Lau, Ken S
Published in Science signaling (11.10.2016)
Published in Science signaling (11.10.2016)
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Journal Article
Abstract PO-051: Tumor stem cells arising from a non-stem origin maintain a differentiated phenotype and modulate T cell activity
Scurrah, Cherie’ R., Chen, Bob, Markham, Nick, Simmons, Alan, Southard-Smith, Austin, Macedonia, Mary, Choi, Eunyoung, Liu, Qi, Washington, Kay, Coffey, Bob, Goettel, Jeremy, Lau, Ken
Published in Cancer research (Chicago, Ill.) (01.11.2020)
Published in Cancer research (Chicago, Ill.) (01.11.2020)
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Journal Article
Abstract B29: Reorganization of signaling modules revealed in human colorectal cancer using single-cell mass cytometry
Simmons, Alan J., Scurrah, Cherie R., McKinley, Eliot T., Herring, Charles A., Irish, Jonathan M., Washington, Mary K., Coffey, Robert J., Lau, Ken S.
Published in Cancer research (Chicago, Ill.) (01.02.2017)
Published in Cancer research (Chicago, Ill.) (01.02.2017)
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Erratum To: Cytometry‐based single‐cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF‐α‐induced apoptosis in vivo
Simmons, Alan J, Banerjee, Amrita, McKinley, Eliot T, Scurrah, Cherie’ R, Herring, Charles A, Gewin, Leslie S, Masuzaki, Ryota, Karp, Seth J, Franklin, Jeffrey L, Gerdes, Michael J, Irish, Jonathan M, Coffey, Robert J, Lau, Ken S
Published in Molecular systems biology (29.08.2016)
Published in Molecular systems biology (29.08.2016)
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Journal Article
Clinically adaptable polymer enables simultaneous spatial analysis of colonic tissues and biofilms
Macedonia, Mary C, Drewes, Julia L, Markham, Nicholas O, Simmons, Alan J, Roland, Joseph T, Vega, Paige N, Cherie’ R Scurrah, Coffey, Robert J, Shrubsole, Martha J, Sears, Cynthia L, Lau, Ken S
Published in bioRxiv (17.04.2020)
Published in bioRxiv (17.04.2020)
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Paper
Dual indexed design of in-Drop single-cell RNA-seq libraries improves sequencing quality and throughput
Southard-Smith, Austin N, Simmons, Alan J, Chen, Bob, Jones, Angela L, Ramirez-Solano, Marisol A, Vega, Paige N, Scurrah, Cherie' R, Zhao, Yue, Brenan, Michael J, Jiekun Xuan, Porter, Ely B, Chen, Xi, Brenan, Colin Jh, Liu, Qi, Quigley, Lauren Nm, Lau, Ken N
Published in bioRxiv (08.11.2019)
Published in bioRxiv (08.11.2019)
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