CRISPR/Cas9-Mediated Genome Editing of Herpesviruses Limits Productive and Latent Infections
van Diemen, Ferdy R, Kruse, Elisabeth M, Hooykaas, Marjolein J G, Bruggeling, Carlijn E, Schürch, Anita C, van Ham, Petra M, Imhof, Saskia M, Nijhuis, Monique, Wiertz, Emmanuel J H J, Lebbink, Robert Jan
Published in PLoS pathogens (01.06.2016)
Published in PLoS pathogens (01.06.2016)
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Journal Article
On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data
Arredondo-Alonso, Sergio, Willems, Rob J, van Schaik, Willem, Schürch, Anita C
Published in Microbial genomics (01.10.2017)
Published in Microbial genomics (01.10.2017)
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Journal Article
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era
Pöntinen, Anna K., Top, Janetta, Arredondo-Alonso, Sergio, Tonkin-Hill, Gerry, Freitas, Ana R., Novais, Carla, Gladstone, Rebecca A., Pesonen, Maiju, Meneses, Rodrigo, Pesonen, Henri, Lees, John A., Jamrozy, Dorota, Bentley, Stephen D., Lanza, Val F., Torres, Carmen, Peixe, Luisa, Coque, Teresa M., Parkhill, Julian, Schürch, Anita C., Willems, Rob J. L., Corander, Jukka
Published in Nature communications (09.03.2021)
Published in Nature communications (09.03.2021)
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Journal Article
New viruses in idiopathic human diarrhea cases, the Netherlands
Smits, Saskia L, Schapendonk, Claudia M E, van Beek, Janko, Vennema, Harry, Schürch, Anita C, Schipper, Debby, Bodewes, Rogier, Haagmans, Bart L, Osterhaus, Albert D M E, Koopmans, Marion P
Published in Emerging infectious diseases (01.07.2014)
Published in Emerging infectious diseases (01.07.2014)
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Journal Article
mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species
Arredondo-Alonso, Sergio, Rogers, Malbert R C, Braat, Johanna C, Verschuuren, Tess D, Top, Janetta, Corander, Jukka, Willems, Rob J L, Schürch, Anita C
Published in Microbial genomics (01.11.2018)
Published in Microbial genomics (01.11.2018)
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Journal Article
Extended-spectrum beta-lactamase (ESBL)-producing and non-ESBL-producing Escherichia coli isolates causing bacteremia in the Netherlands (2014 - 2016) differ in clonal distribution, antimicrobial resistance gene and virulence gene content
van Hout, Denise, Verschuuren, Tess D, Bruijning-Verhagen, Patricia C J, Bosch, Thijs, Schürch, Anita C, Willems, Rob J L, Bonten, Marc J M, Kluytmans, Jan A J W
Published in PloS one (01.01.2020)
Published in PloS one (01.01.2020)
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Journal Article
Prevalence, risk factors and genetic characterisation of extended-spectrum beta-lactamase and carbapenemase-producing Enterobacteriaceae (ESBL-E and CPE): a community-based cross-sectional study, the Netherlands, 2014 to 2016
van den Bunt, Gerrita, van Pelt, Wilfrid, Hidalgo, Laura, Scharringa, Jelle, de Greeff, Sabine C., Schürch, Anita C., Mughini-Gras, Lapo, Bonten, Marc J.M., Fluit, Ad C.
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (10.10.2019)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (10.10.2019)
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Journal Article
Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals
Arredondo-Alonso, Sergio, Top, Janetta, Corander, Jukka, Willems, Rob J L, Schürch, Anita C
Published in Genome medicine (20.01.2021)
Published in Genome medicine (20.01.2021)
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Journal Article
Novel cyclovirus in human cerebrospinal fluid, Malawi, 2010-2011
Smits, Saskia L, Zijlstra, Ed E, van Hellemond, Jaap J, Schapendonk, Claudia M E, Bodewes, Rogier, Schürch, Anita C, Haagmans, Bart L, Osterhaus, Albert D M E
Published in Emerging infectious diseases (01.09.2013)
Published in Emerging infectious diseases (01.09.2013)
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Journal Article
gplas: a comprehensive tool for plasmid analysis using short-read graphs
Arredondo-Alonso, Sergio, Bootsma, Martin, Hein, Yaïr, Rogers, Malbert R C, Corander, Jukka, Willems, Rob J L, Schürch, Anita C
Published in Bioinformatics (01.06.2020)
Published in Bioinformatics (01.06.2020)
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Journal Article
High-Resolution Typing by Integration of Genome Sequencing Data in a Large Tuberculosis Cluster
Schürch, Anita C, Kremer, Kristin, Daviena, Olaf, Kiers, Albert, Boeree, Martin J, Siezen, Roland J, van Soolingen, Dick
Published in Journal of Clinical Microbiology (01.09.2010)
Published in Journal of Clinical Microbiology (01.09.2010)
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Journal Article
Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints
McEvoy, Christopher R E, Cloete, Ruben, Müller, Borna, Schürch, Anita C, van Helden, Paul D, Gagneux, Sebastien, Warren, Robin M, Gey van Pittius, Nicolaas C
Published in PloS one (04.04.2012)
Published in PloS one (04.04.2012)
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Journal Article
Exploring the potential of next-generation sequencing in detection of respiratory viruses
Prachayangprecha, Slinporn, Schapendonk, Claudia M E, Koopmans, Marion P, Osterhaus, Albert D M E, Schürch, Anita C, Pas, Suzan D, van der Eijk, Annemiek A, Poovorawan, Yong, Haagmans, Bart L, Smits, Saskia L
Published in Journal of clinical microbiology (01.10.2014)
Published in Journal of clinical microbiology (01.10.2014)
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Journal Article
Sequence-based epidemiology of an OXA-48 plasmid during a hospital outbreak
Hidalgo, Laura, de Been, Mark, Rogers, Malbert R C, Schürch, Anita C, Scharringa, Jelle, van der Zee, Anneke, Bonten, Marc J M, Fluit, Ad C
Published in Antimicrobial agents and chemotherapy (01.12.2019)
Published in Antimicrobial agents and chemotherapy (01.12.2019)
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Journal Article
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data
Bryant, Josephine M, Schürch, Anita C, van Deutekom, Henk, Harris, Simon R, de Beer, Jessica L, de Jager, Victor, Kremer, Kristin, van Hijum, Sacha A F T, Siezen, Roland J, Borgdorff, Martien, Bentley, Stephen D, Parkhill, Julian, van Soolingen, Dick
Published in BMC infectious diseases (27.02.2013)
Published in BMC infectious diseases (27.02.2013)
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Journal Article
Mge-cluster: a reference-free approach for typing bacterial plasmids
Arredondo-Alonso, Sergio, Gladstone, Rebecca A, Pöntinen, Anna K, Gama, João A, Schürch, Anita C, Lanza, Val F, Johnsen, Pål Jarle, Samuelsen, Ørjan, Tonkin-Hill, Gerry, Corander, Jukka
Published in NAR genomics and bioinformatics (01.09.2023)
Published in NAR genomics and bioinformatics (01.09.2023)
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Journal Article
Picobirnaviruses in the human respiratory tract
Smits, Saskia L, van Leeuwen, Marije, Schapendonk, Claudia M E, Schürch, Anita C, Bodewes, Rogier, Haagmans, Bart L, Osterhaus, Albert D M E
Published in Emerging infectious diseases (01.09.2012)
Published in Emerging infectious diseases (01.09.2012)
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Journal Article
Identification of HCV Resistant Variants against Direct Acting Antivirals in Plasma and Liver of Treatment Naïve Patients
Raj, V. Stalin, Hundie, Gadissa Bedada, Schürch, Anita C., Smits, Saskia L., Pas, Suzan D., Le Pogam, Sophie, Janssen, Harry L. A., de Knegt, Rob J., Osterhaus, Albert D. M. E., Najera, Isabel, Boucher, Charles A., Haagmans, Bart L.
Published in Scientific reports (05.07.2017)
Published in Scientific reports (05.07.2017)
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