Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI
Ciufo, Stacy, Kannan, Sivakumar, Sharma, Shobha, Badretdin, Azat, Clark, Karen, Turner, Seán, Brover, Slava, Schoch, Conrad L, Kimchi, Avi, DiCuccio, Michael
Published in International journal of systematic and evolutionary microbiology (01.07.2018)
Published in International journal of systematic and evolutionary microbiology (01.07.2018)
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GenBank
Sayers, Eric W, Cavanaugh, Mark, Clark, Karen, Pruitt, Kim D, Schoch, Conrad L, Sherry, Stephen T, Karsch-Mizrachi, Ilene
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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NCBI Taxonomy: a comprehensive update on curation, resources and tools
Schoch, Conrad L, Ciufo, Stacy, Domrachev, Mikhail, Hotton, Carol L, Kannan, Sivakumar, Khovanskaya, Rogneda, Leipe, Detlef, Mcveigh, Richard, O’Neill, Kathleen, Robbertse, Barbara, Sharma, Shobha, Soussov, Vladimir, Sullivan, John P, Sun, Lu, Turner, Seán, Karsch-Mizrachi, Ilene
Published in Database : the journal of biological databases and curation (2020)
Published in Database : the journal of biological databases and curation (2020)
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Filling gaps in biodiversity knowledge for macrofungi: contributions and assessment of an herbarium collection DNA barcode sequencing project
Osmundson, Todd W, Robert, Vincent A, Schoch, Conrad L, Baker, Lydia J, Smith, Amy, Robich, Giovanni, Mizzan, Luca, Garbelotto, Matteo M
Published in PloS one (30.04.2013)
Published in PloS one (30.04.2013)
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Database resources of the National Center for Biotechnology Information
Sayers, Eric W, Agarwala, Richa, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Clark, Karen, Connor, Ryan, Fiorini, Nicolas, Funk, Kathryn, Hefferon, Timothy, Holmes, J Bradley, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, Marchler-Bauer, Aron, Phan, Lon, Schneider, Valerie A, Schoch, Conrad L, Pruitt, Kim D, Ostell, James
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Database resources of the National Center for Biotechnology Information
Sayers, Eric W, Beck, Jeff, Bolton, Evan E, Brister, J Rodney, Chan, Jessica, Comeau, Donald C, Connor, Ryan, DiCuccio, Michael, Farrell, Catherine M, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hatcher, Eneida, Hoeppner, Marilu, Kane, Megan, Kannan, Sivakumar, Katz, Kenneth S, Kelly, Christopher, Klimke, William, Kim, Sunghwan, Kimchi, Avi, Landrum, Melissa, Lathrop, Stacy, Lu, Zhiyong, Malheiro, Adriana, Marchler-Bauer, Aron, Murphy, Terence D, Phan, Lon, Prasad, Arjun B, Pujar, Shashikant, Sawyer, Amanda, Schmieder, Erin, Schneider, Valerie A, Schoch, Conrad L, Sharma, Shobha, Thibaud-Nissen, Françoise, Trawick, Barton W, Venkatapathi, Thilakam, Wang, Jiyao, Pruitt, Kim D, Sherry, Stephen T
Published in Nucleic acids research (05.01.2024)
Published in Nucleic acids research (05.01.2024)
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Journal Article
The Revised Classification of Eukaryotes
Adl, Sina M., Simpson, Alastair G. B., Lane, Christopher E., Lukeš, Julius, Bass, David, Bowser, Samuel S., Brown, Matthew W., Burki, Fabien, Dunthorn, Micah, Hampl, Vladimir, Heiss, Aaron, Hoppenrath, Mona, Lara, Enrique, le Gall, Line, Lynn, Denis H., McManus, Hilary, Mitchell, Edward A. D., Mozley-Stanridge, Sharon E., Parfrey, Laura W., Pawlowski, Jan, Rueckert, Sonja, Shadwick, Laura, Schoch, Conrad L., Smirnov, Alexey, Spiegel, Frederick W.
Published in The Journal of eukaryotic microbiology (01.09.2012)
Published in The Journal of eukaryotic microbiology (01.09.2012)
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Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
Lücking, Robert, Aime, M. Catherine, Robbertse, Barbara, Miller, Andrew N, Ariyawansa, Hiran A, Aoki, Takayuki, Cardinali, Gianluigi, Crous, Pedro W, Druzhinina, Irina S, Geiser, David M, Hawksworth, David L, Hyde, Kevin D, Irinyi, Laszlo, Jeewon, Rajesh, Johnston, Peter R, Kirk, Paul M, Malosso, Elaine, May, Tom W, Meyer, Wieland, üpik, Maarja, Robert, Vincent, Stadler, Marc, Thines, Marco, Vu, Duong, Yurkov, Andrey M, Zhang, Ning, Schoch, Conrad L
Published in IMA fungus (10.07.2020)
Published in IMA fungus (10.07.2020)
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A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families
Miadlikowska, Jolanta, Kauff, Frank, Högnabba, Filip, Oliver, Jeffrey C., Molnár, Katalin, Fraker, Emily, Gaya, Ester, Hafellner, Josef, Hofstetter, Valérie, Gueidan, Cécile, Otálora, Mónica A.G., Hodkinson, Brendan, Kukwa, Martin, Lücking, Robert, Björk, Curtis, Sipman, Harrie J.M., Burgaz, Ana Rosa, Thell, Arne, Passo, Alfredo, Myllys, Leena, Goward, Trevor, Fernández-Brime, Samantha, Hestmark, Geir, Lendemer, James, Lumbsch, H. Thorsten, Schmull, Michaela, Schoch, Conrad L., Sérusiaux, Emmanuël, Maddison, David R., Arnold, A. Elizabeth, Lutzoni, François, Stenroos, Soili
Published in Molecular phylogenetics and evolution (01.10.2014)
Published in Molecular phylogenetics and evolution (01.10.2014)
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Web Resource
NCBI taxonomy: enhanced access via NCBI datasets
Cox, Eric, Tsuchiya, Mirian T N, Ciufo, Stacy, Torcivia, John, Falk, Robert, Anderson, W Ray, Holmes, J Bradley, Hem, Vichet, Breen, Laurie, Davis, Emily, Ketter, Anne, Zhang, Peifen, Soussov, Vladimir, Schoch, Conrad L, O'Leary, Nuala A
Published in Nucleic acids research (29.10.2024)
Published in Nucleic acids research (29.10.2024)
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Journal Article
How to publish a new fungal species, or name, version 3.0
Aime, M Catherine, Miller, Andrew N, Aoki, Takayuki, Bensch, Konstanze, Cai, Lei, Crous, Pedro W, Hawksworth, David L, Hyde, Kevin D, Kirk, Paul M, Lücking, Robert, May, Tom W, Malosso, Elaine, Redhead, Scott A, Rossman, Amy Y, Stadler, Marc, Thines, Marco, Yurkov, Andrey M, Zhang, Ning, Schoch, Conrad L
Published in IMA fungus (03.05.2021)
Published in IMA fungus (03.05.2021)
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Journal Article
Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
Grandaubert, Jonathan, Lowe, Rohan G T, Soyer, Jessica L, Schoch, Conrad L, Van de Wouw, Angela P, Fudal, Isabelle, Robbertse, Barbara, Lapalu, Nicolas, Links, Matthew G, Ollivier, Bénédicte, Linglin, Juliette, Barbe, Valérie, Mangenot, Sophie, Cruaud, Corinne, Borhan, Hossein, Howlett, Barbara J, Balesdent, Marie-Hélène, Rouxel, Thierry
Published in BMC genomics (12.10.2014)
Published in BMC genomics (12.10.2014)
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Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation
Schäffer, Alejandro A., McVeigh, Richard, Robbertse, Barbara, Schoch, Conrad L., Johnston, Anjanette, Underwood, Beverly A., Karsch-Mizrachi, Ilene, Nawrocki, Eric P.
Published in BMC bioinformatics (12.08.2021)
Published in BMC bioinformatics (12.08.2021)
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Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
Brandon Matheny, P., Wang, Zheng, Binder, Manfred, Curtis, Judd M., Lim, Young Woon, Henrik Nilsson, R., Hughes, Karen W., Hofstetter, Valérie, Ammirati, Joseph F., Schoch, Conrad L., Langer, Ewald, Langer, Gitta, McLaughlin, David J., Wilson, Andrew W., Frøslev, Tobias, Ge, Zai-Wei, Kerrigan, Richard W., Slot, Jason C., Yang, Zhu-Liang, Baroni, Timothy J., Fischer, Michael, Hosaka, Kentaro, Matsuura, Kenji, Seidl, Michelle T., Vauras, Jukka, Hibbett, David S.
Published in Molecular phylogenetics and evolution (01.05.2007)
Published in Molecular phylogenetics and evolution (01.05.2007)
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Detection and Identification of Fungi Intimately Associated with the Brown Seaweed Fucus serratus
Zuccaro, Alga, Schoch, Conrad L, Spatafora, Joseph W, Kohlmeyer, Jan, Draeger, Siegfried, Mitchell, Julian I
Published in Applied and Environmental Microbiology (01.02.2008)
Published in Applied and Environmental Microbiology (01.02.2008)
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Dothideomycete-Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum
Hane, James K, Lowe, Rohan G.T, Solomon, Peter S, Tan, Kar-Chun, Schoch, Conrad L, Spatafora, Joseph W, Crous, Pedro W, Kodira, Chinappa, Birren, Bruce W, Galagan, James E, Torriani, Stefano F.F, McDonald, Bruce A, Oliver, Richard P
Published in The Plant cell (01.11.2007)
Published in The Plant cell (01.11.2007)
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Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA
Inderbitzin, Patrik, Robbertse, Barbara, Schoch, Conrad L
Published in Phytobiomes journal (01.01.2020)
Published in Phytobiomes journal (01.01.2020)
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Journal Article
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences
Nilsson, R. Henrik, Tedersoo, Leho, Abarenkov, Kessy, Ryberg, Martin, Kristiansson, Erik, Hartmann, Martin, Schoch, Conrad L., Nylander, Johan A. A., Bergsten, Johannes, Porter, Teresita M., Jumpponen, Ari, Vaishampayan, Parag, Ovaskainen, Otso, Hallenberg, Nils, Bengtsson-Palme, Johan, Eriksson, K. Martin, Larsson, Karl-Henrik, Larsson, Ellen, Kõljalg, Urmas
Published in MycoKeys (Sofia, Bulgaria) (01.01.2012)
Published in MycoKeys (Sofia, Bulgaria) (01.01.2012)
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