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Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
Schiebinger, Geoffrey, Shu, Jian, Tabaka, Marcin, Cleary, Brian, Subramanian, Vidya, Solomon, Aryeh, Gould, Joshua, Liu, Siyan, Lin, Stacie, Berube, Peter, Lee, Lia, Chen, Jenny, Brumbaugh, Justin, Rigollet, Philippe, Hochedlinger, Konrad, Jaenisch, Rudolf, Regev, Aviv, Lander, Eric S.
Published in Cell (07.02.2019)
Published in Cell (07.02.2019)
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Optimal transport analysis reveals trajectories in steady-state systems
Zhang, Stephen, Afanassiev, Anton, Greenstreet, Laura, Matsumoto, Tetsuya, Schiebinger, Geoffrey
Published in PLoS computational biology (03.12.2021)
Published in PLoS computational biology (03.12.2021)
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Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
Schiebinger, Geoffrey, Shu, Jian, Tabaka, Marcin, Cleary, Brian, Subramanian, Vidya, Solomon, Aryeh, Gould, Joshua, Liu, Siyan, Lin, Stacie, Berube, Peter, Lee, Lia, Chen, Jenny, Brumbaugh, Justin, Rigollet, Philippe, Hochedlinger, Konrad, Jaenisch, Rudolf, Regev, Aviv, Lander, Eric S.
Published in Cell (07.03.2019)
Published in Cell (07.03.2019)
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Cellular population dynamics shape the route to human pluripotency
Panariello, Francesco, Gagliano, Onelia, Luni, Camilla, Grimaldi, Antonio, Angiolillo, Silvia, Qin, Wei, Manfredi, Anna, Annunziata, Patrizia, Slovin, Shaked, Vaccaro, Lorenzo, Riccardo, Sara, Bouche, Valentina, Dionisi, Manuela, Salvi, Marcello, Martewicz, Sebastian, Hu, Manli, Cui, Meihua, Stuart, Hannah, Laterza, Cecilia, Baruzzo, Giacomo, Schiebinger, Geoffrey, Di Camillo, Barbara, Cacchiarelli, Davide, Elvassore, Nicola
Published in Nature communications (17.05.2023)
Published in Nature communications (17.05.2023)
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DNA-GPS: A theoretical framework for optics-free spatial genomics and synthesis of current methods
Greenstreet, Laura, Afanassiev, Anton, Kijima, Yusuke, Heitz, Matthieu, Ishiguro, Soh, King, Samuel, Yachie, Nozomu, Schiebinger, Geoffrey
Published in Cell Systems (18.10.2023)
Published in Cell Systems (18.10.2023)
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Transcriptional instability is not a universal attribute of aging
Warren, Luigi A., Rossi, Derrick J., Schiebinger, Geoffrey R., Weissman, Irving L., Kim, Stuart K., Quake, Stephen R.
Published in Aging cell (01.12.2007)
Published in Aging cell (01.12.2007)
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Cellular proliferation biases clonal lineage tracing and trajectory inference
Bonham-Carter, Becca, Schiebinger, Geoffrey
Published in Bioinformatics (Oxford, England) (02.08.2024)
Published in Bioinformatics (Oxford, England) (02.08.2024)
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A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants
Shahan, Rachel, Hsu, Che-Wei, Nolan, Trevor M., Cole, Benjamin J., Taylor, Isaiah W., Greenstreet, Laura, Zhang, Stephen, Afanassiev, Anton, Vlot, Anna Hendrika Cornelia, Schiebinger, Geoffrey, Benfey, Philip N., Ohler, Uwe
Published in Developmental cell (28.02.2022)
Published in Developmental cell (28.02.2022)
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Superresolution without separation
Schiebinger, Geoffrey, Robeva, Elina, Recht, Benjamin
Published in Information and inference (15.03.2018)
Published in Information and inference (15.03.2018)
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Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root
Nolan, Trevor M., Vukašinović, Nemanja, Hsu, Che-Wei, Zhang, Jingyuan, Vanhoutte, Isabelle, Shahan, Rachel, Taylor, Isaiah W., Greenstreet, Laura, Heitz, Matthieu, Afanassiev, Anton, Wang, Ping, Szekely, Pablo, Brosnan, Aiden, Yin, Yanhai, Schiebinger, Geoffrey, Ohler, Uwe, Russinova, Eugenia, Benfey, Philip N.
Published in Science (American Association for the Advancement of Science) (31.03.2023)
Published in Science (American Association for the Advancement of Science) (31.03.2023)
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Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo
Massri, Abdull J., Greenstreet, Laura, Afanassiev, Anton, Berrio, Alejandro, Wray, Gregory A., Schiebinger, Geoffrey, McClay, David R.
Published in Development (Cambridge) (01.10.2021)
Published in Development (Cambridge) (01.10.2021)
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PD36-12 ABNORMALITIES IN BOTH SOMATIC AND GERM CELLS DIFFERENTIATE NOA TESTES FROM NORMAL CONTROLS USING SINGLE CELL RNA SEQUENCING
Piechka, Arina, Ebrahimi, Ghazal, Robinson, Meghan, Afanassiev, Anton, Schiebinger, Geoffrey, Belanger, Eric, Hach, Faraz, Flannigan, Ryan
Published in The Journal of urology (01.05.2022)
Published in The Journal of urology (01.05.2022)
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Reconstruction of single-cell lineage trajectories and identification of diversity in fates during the epithelial-to-mesenchymal transition
Cheng, Yu-Chen, Zhang, Yun, Tripathi, Shubham, Harshavardhan, B. V., Jolly, Mohit Kumar, Schiebinger, Geoffrey, Levine, Herbert, McDonald, Thomas O., Michor, Franziska
Published in Proceedings of the National Academy of Sciences - PNAS (06.08.2024)
Published in Proceedings of the National Academy of Sciences - PNAS (06.08.2024)
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Neuropeptide signalling orchestrates T cell differentiation
Hou, Yu, Sun, Linyu, LaFleur, Martin W., Huang, Linglin, Lambden, Conner, Thakore, Pratiksha I., Geiger-Schuller, Kathryn, Kimura, Kimitoshi, Yan, Longjun, Zang, Yue, Tang, Ruihan, Shi, Jingwen, Barilla, Rocky, Deng, Liwen, Subramanian, Ayshwarya, Wallrapp, Antonia, Choi, Hee Sun, Kye, Yoon-Chul, Ashenberg, Orr, Schiebinger, Geoffrey, Doench, John G., Chiu, Isaac M., Regev, Aviv, Sharpe, Arlene H., Kuchroo, Vijay K.
Published in Nature (London) (14.11.2024)
Published in Nature (London) (14.11.2024)
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Sharp Inequalities for f -Divergences
Guntuboyina, Adityanand, Saha, Sujayam, Schiebinger, Geoffrey
Published in IEEE transactions on information theory (01.01.2014)
Published in IEEE transactions on information theory (01.01.2014)
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