Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways
Chun, Hye-Jung E., Lim, Emilia L., Heravi-Moussavi, Alireza, Saberi, Saeed, Mungall, Karen L., Bilenky, Mikhail, Carles, Annaick, Tse, Kane, Shlafman, Inna, Zhu, Kelsey, Qian, Jenny Q., Palmquist, Diana L., He, An, Long, William, Goya, Rodrigo, Ng, Michelle, LeBlanc, Veronique G., Pleasance, Erin, Thiessen, Nina, Wong, Tina, Chuah, Eric, Zhao, Yong-Jun, Schein, Jacquie E., Gerhard, Daniela S., Taylor, Michael D., Mungall, Andrew J., Moore, Richard A., Ma, Yussanne, Jones, Steven J.M., Perlman, Elizabeth J., Hirst, Martin, Marra, Marco A.
Published in Cancer cell (14.03.2016)
Published in Cancer cell (14.03.2016)
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miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer
Pan, Yinghong, Robertson, Gordon, Pedersen, Lykke, Lim, Emilia, Hernandez-Herrera, Anadulce, Rowat, Amy C, Patil, Sagar L, Chan, Clara K, Wen, Yunfei, Zhang, Xinna, Basu-Roy, Upal, Mansukhani, Alka, Chu, Andy, Sipahimalani, Payal, Bowlby, Reanne, Brooks, Denise, Thiessen, Nina, Coarfa, Cristian, Ma, Yussanne, Moore, Richard A, Schein, Jacquie E, Mungall, Andrew J, Liu, Jinsong, Pecot, Chad V, Sood, Anil K, Jones, Steven J M, Marra, Marco A, Gunaratne, Preethi H
Published in Oncotarget (03.05.2016)
Published in Oncotarget (03.05.2016)
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Complete genomic landscape of a recurring sporadic parathyroid carcinoma
Kasaian, Katayoon, Wiseman, Sam M, Thiessen, Nina, Mungall, Karen L, Corbett, Richard D, Qian, Jenny Q, Nip, Ka Ming, He, Ann, Tse, Kane, Chuah, Eric, Varhol, Richard J, Pandoh, Pawan, McDonald, Helen, Zeng, Thomas, Tam, Angela, Schein, Jacquie, Birol, Inanc, Mungall, Andrew J, Moore, Richard A, Zhao, Yongjun, Hirst, Martin, Marra, Marco A, Walker, Blair A, Jones, Steven JM
Published in The Journal of pathology (01.07.2013)
Published in The Journal of pathology (01.07.2013)
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Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing
Haile, Simon, Corbett, Richard D, MacLeod, Tina, Bilobram, Steve, Smailus, Duane, Tsao, Philip, Kirk, Heather, McDonald, Helen, Pandoh, Pawan, Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A, Mungall, Andrew J, Schein, Jacquie, Coope, Robin J, Ma, Yussanne, Zhao, Yongjun, Holt, Rob A, Jones, Steven J, Marra, Marco A
Published in BMC genomics (05.07.2017)
Published in BMC genomics (05.07.2017)
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Correction: miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer
Pan, Yinghong, Robertson, Gordon, Pedersen, Lykke, Lim, Emilia, Hernandez-Herrera, Anadulce, Rowat, Amy C, Patil, Sagar L, Chan, Clara K, Wen, Yunfei, Zhang, Xinna, Basu-Roy, Upal, Mansukhani, Alka, Chu, Andy, Sipahimalani, Payal, Bowlby, Reanne, Brooks, Denise, Thiessen, Nina, Coarfa, Cristian, Ma, Yussanne, Moore, Richard A, Schein, Jacquie E, Mungall, Andrew J, Liu, Jinsong, Pecot, Chad V, Sood, Anil K, Jones, Steven J M, Marra, Marco A, Gunaratne, Preethi H
Published in Oncotarget (07.03.2017)
Published in Oncotarget (07.03.2017)
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Functional Characterization of a Catabolic Plasmid from Polychlorinated- Biphenyl-Degrading Rhodococcus sp. Strain RHA1
WARREN, René, HSIAO, William W. L, YANG, George, STOTT, Jeff M, SCHEIN, Jacquie E, HEESUN SHIN, KHATTRA, Jaswinder, SMAILUS, Duane, BUTTERFIELD, Yaron S, SIDDIQUI, Asim, HOLT, Robert, MARRA, Marco A, KUDO, Hisashi, JONES, Steven J. M, MOHN, William W, BRINKMAN, Fiona S. L, FUKUDA, Masao, DAVIES, Julian, ELTIS, Lindsay D, MYHRE, Matt, DOSANJH, Manisha, PETRESCU, Anca, KOBAYASHI, Hiroyuki, SHIMIZU, Satoru, MIYAUCHI, Keisuke, MASAI, Eiji
Published in Journal of Bacteriology (01.11.2004)
Published in Journal of Bacteriology (01.11.2004)
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Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
Ley, Timothy J, Miller, Christopher, Ding, Li, Raphael, Benjamin J, Mungall, Andrew J, Robertson, A Gordon, Hoadley, Katherine, Triche, Jr, Timothy J, Laird, Peter W, Baty, Jack D, Fulton, Lucinda L, Fulton, Robert, Heath, Sharon E, Kalicki-Veizer, Joelle, Kandoth, Cyriac, Klco, Jeffery M, Koboldt, Daniel C, Kanchi, Krishna-Latha, Kulkarni, Shashikant, Lamprecht, Tamara L, Larson, David E, Lin, Ling, Lu, Charles, McLellan, Michael D, McMichael, Joshua F, Payton, Jacqueline, Schmidt, Heather, Spencer, David H, Tomasson, Michael H, Wallis, John W, Wartman, Lukas D, Watson, Mark A, Welch, John, Wendl, Michael C, Ally, Adrian, Balasundaram, Miruna, Birol, Inanc, Butterfield, Yaron, Chiu, Readman, Chu, Andy, Chuah, Eric, Chun, Hye-Jung, Corbett, Richard, Dhalla, Noreen, Guin, Ranabir, He, An, Hirst, Carrie, Hirst, Martin, Holt, Robert A, Jones, Steven, Karsan, Aly, Lee, Darlene, Li, Haiyan I, Marra, Marco A, Mayo, Michael, Moore, Richard A, Mungall, Karen, Parker, Jeremy, Pleasance, Erin, Plettner, Patrick, Schein, Jacquie, Stoll, Dominik, Swanson, Lucas, Tam, Angela, Thiessen, Nina, Varhol, Richard, Wye, Natasja, Zhao, Yongjun, Gabriel, Stacey, Getz, Gad, Sougnez, Carrie, Zou, Lihua, Leiserson, Mark D M, Vandin, Fabio, Wu, Hsin-Ta, Applebaum, Frederick, Baylin, Stephen B, Akbani, Rehan, Broom, Bradley M, Chen, Ken, Motter, Thomas C, Nguyen, Khanh, Weinstein, John N, Zhang, Nianziang, Ferguson, Martin L, Adams, Christopher, Black, Aaron, Bowen, Jay, Gastier-Foster, Julie, Grossman, Thomas, Lichtenberg, Tara, Wise, Lisa, Davidsen, Tanja, Demchok, John A, Shaw, Kenna R Mills, Sheth, Margi, Sofia, Heidi J, Yang, Liming, Downing, James R, Eley, Greg
Published in The New England journal of medicine (30.05.2013)
Published in The New England journal of medicine (30.05.2013)
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The Genome of the Kinetoplastid Parasite, Leishmania major
Ivens, Alasdair C., Peacock, Christopher S., Worthey, Elizabeth A., Murphy, Lee, Aggarwal, Gautam, Berriman, Matthew, Sisk, Ellen, Rajandream, Marie-Adele, Adlem, Ellen, Aert, Rita, Anupama, Atashi, Apostolou, Zina, Bason, Nathalie, Bauser, Christopher, Beck, Alfred, Beverley, Stephen M., Bianchettin, Gabriella, Borzym, Katja, Bothe, Gordana, Bruschi, Carlo V., Collins, Matt, Cadag, Eithon, Ciarloni, Laura, Clayton, Christine, Richard M. R. Coulson, Cronin, Ann, Cruz, Angela K., Davies, Robert M., De Gaudenzi, Javier, Dobson, Deborah E., Duesterhoeft, Andreas, Fazelina, Gholam, Fosker, Nigel, Frasch, Alberto Carlos, Fraser, Audrey, Fuchs, Monika, Gabel, Claudia, Goble, Arlette, Goffeau, André, Harris, David, Hertz-Fowler, Christiane, Hilbert, Helmut, Horn, David, Huang, Yiting, Klages, Sven, Knights, Andrew, Kube, Michael, Larke, Natasha, Litvin, Lyudmila, Lord, Angela, Louie, Tin, Marra, Marco, Masuy, David, Matthews, Keith, Michaeli, Shulamit, Mottram, Jeremy C., Müller-Auer, Silke, Munden, Heather, Nelson, Siri, Norbertczak, Halina, Oliver, Karen, O'Neil, Susan, Pentony, Martin, Pohl, Thomas M., Price, Claire, Purnelle, Bénédicte, Quail, Michael A., Rabbinowitsch, Ester, Reinhardt, Richard, Rieger, Michael, Rinta, Joel, Robben, Johan, Robertson, Laura, Ruiz, Jeronimo C., Rutter, Simon, Saunders, David, Schäfer, Melanie, Schein, Jacquie, Schwartz, David C., Seeger, Kathy, Seyler, Amber, Sharp, Sarah, Shin, Heesun, Sivam, Dhileep, Squares, Rob, Squares, Steve, Tosato, Valentina, Vogt, Christy, Volckaert, Guido, Wambutt, Rolf, Warren, Tim, Wedler, Holger, Woodward, John, Zhou, Shiguo, Zimmermann, Wolfgang, Smith, Deborah F., Blackwell, Jenefer M., Stuart, Kenneth D., Barrell, Bart, Myler, Peter J.
Published in Science (American Association for the Advancement of Science) (15.07.2005)
Published in Science (American Association for the Advancement of Science) (15.07.2005)
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Abstract 5226: Genomic analysis of pancreatic ductal adenocarcinoma in a patient with MUTYH-associated polyposis
Schrader, Kasmintan A., Chu’ng, Carolyn, Zhao, Eric, Wong, Hui-li, Shen, Yaoqing, Jones, Martin, Thomson, Tom, Lim, Howard, Young, Sean, Cremin, Carol, Holt, Robert, Eirew, Peter, Karasinska, Joanna, Schein, Jacquie, Zhao, Yongjun, Mungall, Andy, Moore, Richard, Ma, Yussanne, Fok, Alexandra, Roscoe, Robyn, Yip, Stephen, Mitchell, Gillian, Karsan, Aly, Jones, Steven, Schaeffer, David, Laskin, Janessa, Marra, Marco, Renouf, Daniel
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Abstract 3087: Whole genome sequencing of rhabdoid tumors of the kidney
Chun, Hye-Jung E., Zhu, Kelsey, Qian, Jenny Q., Mungall, Karen L., Ma, Yussanne, Zhao, Yong-Jun, Mungall, Andrew J., Moore, Richard A., Schein, Jacquie E., Gerhard, Daniela S., Perlman, Elizabeth J., Marra, Marco A.
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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Implementation of Watson Genomic Analytics processing to improve the efficiency of interpreting whole genome sequencing data on patients with advanced cancers
Koyama, Takahiko, Jones, Steven, Utro, Filippo, Ma, Yussanne, Rhrissorrakrai, Kahn, Shen, Yaoqing, Carmeli, Boaz, Jones, Martin, Waks, Zeev, Pleasance, Erin, Norel, Raquel, Moore, Richard, Bilal, Erhan, Mungall, Andrew J., Beaty, Kirk, Schein, Jacquie, Michelini, Vanessa Vincenzi, Marra, Marco, Royyuru, Ajay, Laskin, Janessa J.
Published in Journal of clinical oncology (20.05.2015)
Published in Journal of clinical oncology (20.05.2015)
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High resolution analysis of follicular lymphoma genomes reveals somatic recurrent sites of copy-neutral loss of heterozygosity and copy number alterations that target single genes
Cheung, K-John J., Delaney, Allen, Ben-Neriah, Susana, Schein, Jacquie, Lee, Tang, Shah, Sohrab P., Cheung, Dorothy, Johnson, Nathalie A., Mungall, Andrew J., Telenius, Adele, Lai, Betty, Boyle, Merrill, Connors, Joseph M., Gascoyne, Randy D., Marra, Marco A., Horsman, Douglas E.
Published in Genes chromosomes & cancer (01.08.2010)
Published in Genes chromosomes & cancer (01.08.2010)
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A physical map of the chicken genome
Warren, Wesley C, Wallis, John W, Aerts, Jan, Groenen, Martien A. M, Crooijmans, Richard P. M. A, Layman, Dan, Graves, Tina A, Scheer, Debra E, Kremitzki, Colin, Fedele, Mary J, Mudd, Nancy K, Cardenas, Marco, Higginbotham, Jamey, Carter, Jason, McGrane, Rebecca, Gaige, Tony, Mead, Kelly, Walker, Jason, Albracht, Derek, Davito, Jonathan, Yang, Shiaw-Pyng, Leong, Shin, Chinwalla, Asif, Sekhon, Mandeep, Wylie, Kristine, Dodgson, Jerry, Romanov, Michael N, Cheng, Hans, de Jong, Pieter J, Osoegawa, Kazutoyo, Nefedov, Mikhail, Zhang, Hongbin, McPherson, John D, Krzywinski, Martin, Schein, Jacquie, Hillier, LaDeana, Mardis, Elaine R, Wilson, Richard K
Published in Nature (09.12.2004)
Published in Nature (09.12.2004)
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Abstract 5340: Bioinformatic analyses approaches for personalized oncogenomics
Kasaian, Katayoon, Shen, Yaoqing, Leelakumari, Sreeja, Eirew, Peter, Li, Yvonne Y., Pleasance, Erin, Corbett, Richard, Mungall, Karen L., Schein, Jacquie, Mungall, Andrew J., Zhao, Yongjun, Moore, Richard A., Yip, Stephen, Gelmon, Karen, Lim, Howard, Renouf, Daniel, Roscoe, Robyn, Ma, Yussanne, Marra, Marco A., Laskin, Janessa, Jones, Steven J.
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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A case of the utilization of genomic information in the management of metastatic colorectal cancer
Peixoto, Renata D'Alpino, Li, Yvonne, Pleasance, Erin, Yip, Stephen, Zhao, Yongjun, Schein, Jacquie, Shen, Yaoqing, Lim, Howard John, Renouf, Daniel John, Gelmon, Karen A., Huntsman, David, Jones, Steven, Marra, Marco, Laskin, Janessa J.
Published in Journal of clinical oncology (01.02.2013)
Published in Journal of clinical oncology (01.02.2013)
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Practical application of whole genome and transcriptome tumour analysis to guide chemotherapy decision-making for patients with advanced cancers
Laskin, Janessa J., Lim, Howard John, Gelmon, Karen A., Ho, Cheryl, Renouf, Daniel John, Yip, Stephen, Huntsman, David, Tinker, Anna, Pleasance, Erin, Li, Yvonne, Shen, Yaoqing, Kasaian, Katayoon, Corbett, Richard, Mungall, Karen, Mungall, Andrew, Zhao, Yongjun, Schein, Jacquie, Roscoe, Robyn, Jones, Steven, Marra, Marco
Published in Journal of clinical oncology (20.05.2013)
Published in Journal of clinical oncology (20.05.2013)
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Abstract LB-173: Genome analysis informs chemotherapy decision-making in patients with advanced malignancies
Laskin, Janessa J., Gelmon, Karen, Lim, Howard, Renouf, Daniel, Yip, Stephen, Huntsman, David, Tinker, Anna, Ho, Cheryl, Pleasance, Erin D., Li, Yvonne, Shen, Yaoqing, Kasaian, Katayoon, Corbett, Richard, Mungall, Karen, Zhao, Yongjun, Mungall, Andy, Schein, Jacquie, Roscoe, Robyn, Jones, Steven, Marra, Marco
Published in Cancer research (Chicago, Ill.) (15.04.2013)
Published in Cancer research (Chicago, Ill.) (15.04.2013)
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