CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing
Wallace, Amelia D, Sasani, Thomas A, Swanier, Jordan, Gates, Brooke L, Greenland, Jeff, Pedersen, Brent S, Varley, Katherine E, Quinlan, Aaron R
Published in PloS one (08.04.2021)
Published in PloS one (08.04.2021)
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Journal Article
Poxviruses capture host genes by LINE-1 retrotransposition
Fixsen, Sarah M, Cone, Kelsey R, Goldstein, Stephen A, Sasani, Thomas A, Quinlan, Aaron R, Rothenburg, Stefan, Elde, Nels C
Published in eLife (07.09.2022)
Published in eLife (07.09.2022)
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Journal Article
SV-plaudit: A cloud-based framework for manually curating thousands of structural variants
Belyeu, Jonathan R, Nicholas, Thomas J, Pedersen, Brent S, Sasani, Thomas A, Havrilla, James M, Kravitz, Stephanie N, Conway, Megan E, Lohman, Brian K, Quinlan, Aaron R, Layer, Ryan M
Published in Gigascience (01.07.2018)
Published in Gigascience (01.07.2018)
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Journal Article
Overlooked roles of DNA damage and maternal age in generating human germline mutations
Gao, Ziyue, Moorjani, Priya, Sasani, Thomas A., Pedersen, Brent S., Quinlan, Aaron R., Jorde, Lynn B., Amster, Guy, Przeworski, Molly
Published in Proceedings of the National Academy of Sciences - PNAS (07.05.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (07.05.2019)
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Journal Article
Nanopore sequencing and assembly of a human genome with ultra-long reads
Jain, Miten, Koren, Sergey, Miga, Karen H, Quick, Josh, Rand, Arthur C, Sasani, Thomas A, Tyson, John R, Beggs, Andrew D, Dilthey, Alexander T, Fiddes, Ian T, Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olsen, Hugh E, Pedersen, Brent S, Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R, Snutch, Terrance P, Tee, Louise, Paten, Benedict, Phillippy, Adam M, Simpson, Jared T, Loman, Nicholas J, Loose, Matthew
Published in Nature biotechnology (01.04.2018)
Published in Nature biotechnology (01.04.2018)
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Journal Article
Discovery of rare, diagnostic AluYb8/9 elements in diverse human populations
Feusier, Julie, Witherspoon, David J, Scott Watkins, W, Goubert, Clñment, Sasani, Thomas A, Jorde, Lynn B
Published in Mobile DNA (27.07.2017)
Published in Mobile DNA (27.07.2017)
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Journal Article
A natural mutator allele shapes mutation spectrum variation in mice
Sasani, Thomas A., Ashbrook, David G., Beichman, Annabel C., Lu, Lu, Palmer, Abraham A., Williams, Robert W., Pritchard, Jonathan K., Harris, Kelley
Published in Nature (London) (19.05.2022)
Published in Nature (London) (19.05.2022)
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Journal Article
Unfazed: parent-of-origin detection for large and small de novo variants
Belyeu, Jonathan R, Sasani, Thomas A, Pedersen, Brent S, Quinlan, Aaron R
Published in Bioinformatics (11.12.2021)
Published in Bioinformatics (11.12.2021)
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Journal Article
Germline mutation rates in young adults predict longevity and reproductive lifespan
Cawthon, Richard M., Meeks, Huong D., Sasani, Thomas A., Smith, Ken R., Kerber, Richard A., O’Brien, Elizabeth, Baird, Lisa, Dixon, Melissa M., Peiffer, Andreas P., Leppert, Mark F., Quinlan, Aaron R., Jorde, Lynn B.
Published in Scientific reports (19.06.2020)
Published in Scientific reports (19.06.2020)
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Journal Article
Cover Image, Volume 74, Issue 10
Piasecki, Brian P., Sasani, Thomas A., Lessenger, Alexander T., Huth, Nicholas, Farrell, Shane
Published in Cytoskeleton (Hoboken, N.J.) (01.10.2017)
Published in Cytoskeleton (Hoboken, N.J.) (01.10.2017)
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Journal Article
A familial, telomere-to-telomere reference for human de novo mutation and recombination from a four-generation pedigree
Porubsky, David, Dashnow, Harriet, Sasani, Thomas A, Logsdon, Glennis A, Hallast, Pille, Noyes, Michelle D, Kronenberg, Zev N, Mokveld, Tom, Koundinya, Nidhi, Nolan, Cillian, Steely, Cody J, Guarracino, Andrea, Dolzhenko, Egor, Harvey, William T, Rowell, William J, Grigorev, Kirill, Nicholas, Thomas J, Oshima, Keisuke K, Lin, Jiadong, Ebert, Peter, Watkins, W Scott, Leung, Tiffany Y, Hanlon, Vincent C T, McGee, Sean, Pedersen, Brent S, Goldberg, Michael E, Happ, Hannah C, Jeong, Hyeonsoo, Munson, Katherine M, Hoekzema, Kendra, Chan, Daniel D, Wang, Yanni, Knuth, Jordan, Garcia, Gage H, Fanslow, Cairbre, Lambert, Christine, Lee, Charles, Smith, Joshua D, Levy, Shawn, Mason, Christopher E, Garrison, Erik, Lansdorp, Peter M, Neklason, Deborah W, Jorde, Lynn B, Quinlan, Aaron R, Eberle, Michael A, Eichler, Evan E
Published in bioRxiv (05.08.2024)
Published in bioRxiv (05.08.2024)
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