P56 Machine learning identifies a biomarker derived from human colonoids predicting response to ustekinumab in IBD
Pavlidis, Polychronis, Yang, Feifei, Tsakmaki, Anastasia, Cozzetto, Domenico, Niazi, Umar, Saqi, Mansoor, Friedman, Joshua, Bewick, Gavin, Li, Katherine, Powell, Nick
Published in Gut (19.06.2022)
Published in Gut (19.06.2022)
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Journal Article
Interleukin-22 regulates neutrophil recruitment in ulcerative colitis and is associated with resistance to ustekinumab therapy
Pavlidis, Polychronis, Tsakmaki, Anastasia, Pantazi, Eirini, Li, Katherine, Cozzetto, Domenico, Digby- Bell, Jonathan, Yang, Feifei, Lo, Jonathan W., Alberts, Elena, Sa, Ana Caroline Costa, Niazi, Umar, Friedman, Joshua, Long, Anna K., Ding, Yuchun, Carey, Christopher D., Lamb, Christopher, Saqi, Mansoor, Madgwick, Matthew, Gul, Leila, Treveil, Agatha, Korcsmaros, Tamas, Macdonald, Thomas T., Lord, Graham M., Bewick, Gavin, Powell, Nick
Published in Nature communications (03.10.2022)
Published in Nature communications (03.10.2022)
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Journal Article
STON: exploring biological pathways using the SBGN standard and graph databases
Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Published in BMC bioinformatics (05.12.2016)
Published in BMC bioinformatics (05.12.2016)
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Journal Article
Spectral clustering of protein sequences
Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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Journal Article
O32 The interleukin 22//neutrophil axis is associated with treatment resistance in ulcerative colitis
Pavlidis, Polychronis, Tsakmaki, Anastasia, Pantazi, Eirini, Li, Katherine, Cozzetto, Domenico, Yang, Feifei, Lo, Jonathan, Alberts, Ms Elena, Costa Sa, Ana Caroline, Niazi, Umar, Friedman, Joshua, Long, Anna, Ding, Yuchun, Carey, Christopher, Lamb, Christopher, Saqi, Mansoor, Madgwick, Matthew, Gul, Leila, Treveil, Agatha, Korcsmaros, Tamas, MacDonald, Thomas, Lord, Graham, Bewick, Gavin, Powell, Nick
Published in Gut (19.06.2022)
Published in Gut (19.06.2022)
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Journal Article
Predicting deleterious nsSNPs: an analysis of sequence and structural attributes
Dobson, Richard J, Munroe, Patricia B, Caulfield, Mark J, Saqi, Mansoor As
Published in BMC bioinformatics (21.04.2006)
Published in BMC bioinformatics (21.04.2006)
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Journal Article
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms
Mazein, Alexander, Ostaszewski, Marek, Kuperstein, Inna, Watterson, Steven, Le Novère, Nicolas, Lefaudeux, Diane, De Meulder, Bertrand, Pellet, Johann, Balaur, Irina, Saqi, Mansoor, Nogueira, Maria Manuela, He, Feng, Parton, Andrew, Lemonnier, Nathanaël, Gawron, Piotr, Gebel, Stephan, Hainaut, Pierre, Ollert, Markus, Dogrusoz, Ugur, Barillot, Emmanuel, Zinovyev, Andrei, Schneider, Reinhard, Balling, Rudi, Auffray, Charles
Published in NPJ systems biology and applications (02.06.2018)
Published in NPJ systems biology and applications (02.06.2018)
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Journal Article
Neutrophils Dominate the Cervical Immune Cell Population in Pregnancy and Their Transcriptome Correlates With the Microbial Vaginal Environment
Mohd Zaki, Amirah, Hadingham, Alicia, Flaviani, Flavia, Haque, Yasmin, Mi, Jia Dai, Finucane, Debbie, Dalla Valle, Giorgia, Mason, A. James, Saqi, Mansoor, Gibbons, Deena L., Tribe, Rachel M.
Published in Frontiers in microbiology (14.06.2022)
Published in Frontiers in microbiology (14.06.2022)
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Journal Article
Type 2‐low asthma phenotypes by integration of sputum transcriptomics and serum proteomics
Zounemat Kermani, Nazanin, Saqi, Mansoor, Agapow, Paul, Pavlidis, Stelios, Kuo, Chihhsi, Tan, Kai Sen, Mumby, Sharon, Sun, Kai, Loza, Matthew, Baribaud, Frederic, Sousa, Ana R., Riley, John, Wheelock, Asa M., Wheelock, Craig E., De Meulder, Bertrand, Schofield, Jim, Sánchez‐Ovando, Stephany, Simpson, Jodie Louise, Baines, Katherine Joanne, Wark, Peter A., Auffray, Charles, Dahlen, Sven‐Erik, Sterk, Peter J., Djukanovic, Ratko, Adcock, Ian M., Guo, Yi‐ke, Chung, Kian Fan
Published in Allergy (Copenhagen) (01.01.2021)
Published in Allergy (Copenhagen) (01.01.2021)
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Journal Article
Parsing brain-behavior heterogeneity in very preterm born children using integrated similarity networks
Hadaya, Laila, Dimitrakopoulou, Konstantina, Vanes, Lucy D., Kanel, Dana, Fenn-Moltu, Sunniva, Gale-Grant, Oliver, Counsell, Serena J., Edwards, A. David, Saqi, Mansoor, Batalle, Dafnis, Nosarti, Chiara
Published in Translational psychiatry (03.04.2023)
Published in Translational psychiatry (03.04.2023)
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Journal Article
Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles
Waite, Richard D, Paccanaro, Alberto, Papakonstantinopoulou, Anastasia, Hurst, Jacob M, Saqi, Mansoor, Littler, Eddie, Curtis, Michael A
Published in BMC genomics (26.06.2006)
Published in BMC genomics (26.06.2006)
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Journal Article
Systems responses to progressive water stress in durum wheat
Habash, Dimah Z, Baudo, Marcela, Hindle, Matthew, Powers, Stephen J, Defoin-Platel, Michael, Mitchell, Rowan, Saqi, Mansoor, Rawlings, Chris, Latiri, Kawther, Araus, Jose L, Abdulkader, Ahmad, Tuberosa, Roberto, Lawlor, David W, Nachit, Miloudi M
Published in PloS one (29.09.2014)
Published in PloS one (29.09.2014)
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Journal Article
Discovering study-specific gene regulatory networks
Bo, Valeria, Curtis, Tanya, Lysenko, Artem, Saqi, Mansoor, Swift, Stephen, Tucker, Allan
Published in PloS one (05.09.2014)
Published in PloS one (05.09.2014)
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Journal Article
PlatformTM, a standards-based data custodianship platform for translational medicine research
Emam, Ibrahim, Elyasigomari, Vahid, Matthews, Alex, Pavlidis, Stelios, Rocca-Serra, Philippe, Guitton, Florian, Verbeeck, Denny, Grainger, Lucinda, Borgogni, Erica, Del Giudice, Giuseppe, Saqi, Mansoor, Houston, Paul, Guo, Yike
Published in Scientific data (13.08.2019)
Published in Scientific data (13.08.2019)
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Journal Article
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Lysenko, Artem, Defoin-Platel, Michael, Hassani-Pak, Keywan, Taubert, Jan, Hodgman, Charlie, Rawlings, Christopher J, Saqi, Mansoor
Published in BMC bioinformatics (25.05.2011)
Published in BMC bioinformatics (25.05.2011)
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Journal Article
P1211: TUMOR‐ACTIVATED LYMPH NODE FIBROBLASTS SUPPRESS T CELL FUNCTION IN DIFFUSE LARGE B CELL LYMPHOMA
Apollonio, Benedetta, Spada, Filomena, Petrov, Nedyalko, Cozzetto, Domenico, Jarvis, Peter, Papazoglou, Despoina, Kannambath, Shichina, Terranova‐Barberio, Manuela, Amini, Rose‐Marie, Enblad, Gunilla, Graham, Charlotte, Benjamin, Reuben, Phillips, Elizabeth H., Ellis, Richard, Nuamah, Rosamond, Saqi, Mansoor, Calado, Dinis, Rosenquist, Richard, Ann Sutton, Lesley, Salisbury, Jon, Zacharioudakis, Georgios, Vardi, Anna, Hagner, Patrick, Gandhi, Anita, Bacac, Marina, Claus, Christina, Umana, Pablo, Jarrett, Ruth, Klein, Christian, Deutsch, Alexander, Ramsay, Alan
Published in HemaSphere (08.08.2023)
Published in HemaSphere (08.08.2023)
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Journal Article
Protein interaction networks associated with cardiovascular disease and cancer: exploring the effect of bias on shared network properties
Dobson, Richard J B, Munroe, Patricia B, Caulfield, Mark J, Saqi, Mansoor A S
Published in International journal of data mining and bioinformatics (2014)
Published in International journal of data mining and bioinformatics (2014)
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Journal Article