The long―range interaction landscape of gene promoters
SANYAL, Amartya, LAJOIE, Bryan R, JAIN, Gaurav, DEKKER, Job
Published in Nature (London) (06.09.2012)
Published in Nature (London) (06.09.2012)
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Journal Article
The accessible chromatin landscape of the human genome
THURMAN, Robert E, RYNES, Eric, GARG, Kavita, JOHN, Sam, SANDSTROM, Richard, BATES, Daniel, BOATMAN, Lisa, CANFIELD, Theresa K, DIEGEL, Morgan, DUNN, Douglas, EBERSOL, Abigail K, FRUM, Tristan, HUMBERT, Richard, GISTE, Erika, JOHNSON, Audra K, JOHNSON, Ericka M, KUTYAVIN, Tanya, LAJOIE, Bryan, LEE, Bum-Kyu, LEE, Kristen, LONDON, Darin, LOTAKIS, Dimitra, NEPH, Shane, VIERSTRA, Jeff, NERI, Fidencio, NGUYEN, Eric D, HONGZHU QU, REYNOLDS, Alex P, ROACH, Vaughn, SAFI, Alexias, SANCHEZ, Minerva E, SANYAL, Amartya, SHAFER, Anthony, SIMON, Jeremy M, MAURANO, Matthew T, LINGYUN SONG, VONG, Shinny, WEAVER, Molly, YONGQI YAN, ZHANCHENG ZHANG, ZHUZHU ZHANG, LENHARD, Boris, TEWARI, Muneesh, DORSCHNER, Michael O, HANSEN, R. Scott, HAUGEN, Eric, NAVAS, Patrick A, STAMATOYANNOPOULOS, George, IYER, Vishwanath R, LIEB, Jason D, SUNYAEV, Shamil R, AKEY, Joshua M, SABO, Peter J, KAUL, Rajinder, FUREY, Terrence S, DEKKER, Job, SHEFFIELD, Nathan C, STERGACHIS, Andrew B, HAO WANG, VERNOT, Benjamin
Published in Nature (London) (06.09.2012)
Published in Nature (London) (06.09.2012)
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Journal Article
Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
Phillips-Cremins, Jennifer E., Sauria, Michael E.G., Sanyal, Amartya, Gerasimova, Tatiana I., Lajoie, Bryan R., Bell, Joshua S.K., Ong, Chin-Tong, Hookway, Tracy A., Guo, Changying, Sun, Yuhua, Bland, Michael J., Wagstaff, William, Dalton, Stephen, McDevitt, Todd C., Sen, Ranjan, Dekker, Job, Taylor, James, Corces, Victor G.
Published in Cell (06.06.2013)
Published in Cell (06.06.2013)
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Journal Article
Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres
Guin, Krishnendu, Chen, Yao, Mishra, Radha, Muzaki, Siti Rawaidah Bm, Thimmappa, Bhagya C, O'Brien, Caoimhe E, Butler, Geraldine, Sanyal, Amartya, Sanyal, Kaustuv
Published in eLife (29.05.2020)
Published in eLife (29.05.2020)
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Journal Article
Chromatin globules: a common motif of higher order chromosome structure?
Sanyal, Amartya, Baù, Davide, Martí-Renom, Marc A, Dekker, Job
Published in Current opinion in cell biology (01.06.2011)
Published in Current opinion in cell biology (01.06.2011)
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Journal Article
Insights into male germ cell apoptosis due to depletion of gonadotropins caused by GnRH antagonists
Pareek, Tej K, Joshi, Ayesha R, Sanyal, Amartya, Dighe, Rajan R
Published in Apoptosis (London) (01.06.2007)
Published in Apoptosis (London) (01.06.2007)
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Journal Article
Optimizing non-decomposable measures with deep networks
Sanyal, Amartya, Kumar, Pawan, Kar, Purushottam, Chawla, Sanjay, Sebastiani, Fabrizio
Published in Machine learning (01.09.2018)
Published in Machine learning (01.09.2018)
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Journal Article
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
WANG, Kevin C, YANG, Yul W, WYSOCKA, Joanna, MING LEI, DEKKER, Job, HELMS, Jill A, CHANG, Howard Y, BO LIU, SANYAL, Amartya, CORCES-ZIMMERMAN, Ryan, YONG CHEN, LAJOIE, Bryan R, PROTACIO, Angeline, FLYNN, Ryan A, GUPTA, Rajnish A
Published in Nature (London) (07.04.2011)
Published in Nature (London) (07.04.2011)
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Journal Article
An integrated encyclopedia of DNA elements in the human genome
Kundaje, Anshul, Collins, Patrick J, Davis, Carrie A, Khatun, Jainab, Lajoie, Bryan R, Landt, Stephen G, Safi, Alexias, Altshuler, Robert C, Cheng, Chao, Greven, Melissa, Hoffman, Michael M, Lassmann, Timo, Thurman, Robert E, Wu, Weisheng, Xi, Hualin S, Zhuang, Jiali, Gunter, Chris, Dekker, Job, Elnitski, Laura, Giddings, Morgan C, Margulies, Elliott H, Stamatoyannopoulos, John A, Wold, Barbara, Kuiper, Heather C, Dobin, Alex, Tanzer, Andrea, Xue, Chenghai, Zaleski, Chris, Roder, Maik, Baer, Michael T, Bell, Kimberly, Gordon, Assaf, Howald, Cedric, Johnson, Rory, Kingswood, Colin, Li, Guoliang, Luo, Oscar J, Robyr, Daniel, Ruan, Xiaoan, Skancke, Jorgen, Suzuki, Ana Maria, Takahashi, Hazuki, Tilgner, Hagen, Wang, Huaien, Hayashizaki, Yoshihide, Hannon, Gregory J, Malladi, Venkat S, Dreszer, Timothy R, Showers, Kimberly A, London, Darin, Zhang, Zhancheng, Keefe, Damian, Zheng, Meizhen, Vielmetter, Jost, Jain, Preti, Pusey, Barbara, Meadows, Sarah K, Absher, Devin M, Pennachio, Len A, Abyzov, Alexej, Barrell, Daniel, Bignell, Alexandra, Diekhans, Mark, Ezkurdia, Iakes, Frankish, Adam, Hunt, Toby, Jungreis, Irwin, Loveland, Jane, Manthravadi, Deepa, Pei, Baikang, Snow, Catherine, Zhang, Zhengdong, Alexander, Roger P, Balasubramanian, Suganthi, Bettinger, Keith, Cayting, Philip, Habegger, Lukas, Lamarre-Vincent, Nathan, Lindahl-Allen, Marianne, Monahan, Hannah, Patacsil, Dorrelyn, Struhl, Kevin, Ma, Lijia, Inoue, Daigo, Kellner, Tanja, Kirchmaier, Stephan, Bates, Daniel L, Canfield, Theresa K, Boatman, Lisa, Neph, Shane J, Roach, Vaughn, Sanchez, Minerva E, Shafer, Anthony O, Vernot, Benjamin, Weaver, Molly A, Akey, Joshua M, Bender, Michael, Navas, Patrick, Hussami, Nadine, Schaub, Marc A
Published in Nature (London) (06.09.2012)
Published in Nature (London) (06.09.2012)
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Journal Article
Patterns of Growth and Decline in Lung Function in Persistent Childhood Asthma
McGeachie, Michael J, Yates, Katherine P, Zhou, Xiaobo, Guo, Feng, Sternberg, Alice L, Van Natta, Mark L, Wise, Robert A, Szefler, Stanley J, Sharma, Sunita, Kho, Alvin T, Cho, Michael H, Croteau-Chonka, Damien C, Castaldi, Peter J, Jain, Gaurav, Sanyal, Amartya, Zhan, Ye, Lajoie, Bryan R, Dekker, Job, Stamatoyannopoulos, John, Covar, Ronina A, Zeiger, Robert S, Adkinson, N. Franklin, Williams, Paul V, Kelly, H. William, Grasemann, Hartmut, Vonk, Judith M, Koppelman, Gerard H, Postma, Dirkje S, Raby, Benjamin A, Houston, Isaac, Lu, Quan, Fuhlbrigge, Anne L, Tantisira, Kelan G, Silverman, Edwin K, Tonascia, James, Weiss, Scott T, Strunk, Robert C
Published in The New England journal of medicine (12.05.2016)
Published in The New England journal of medicine (12.05.2016)
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Journal Article
The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules
Dekker, Job, Marti-Renom, Marc A, Baù, Davide, Sanyal, Amartya, Lajoie, Bryan R, Capriotti, Emidio, Byron, Meg, Lawrence, Jeanne B
Published in Nature structural & molecular biology (01.01.2011)
Published in Nature structural & molecular biology (01.01.2011)
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Journal Article
An encyclopedia of mouse DNA elements (Mouse ENCODE)
Stamatoyannopoulos, John A, Snyder, Michael, Hardison, Ross, Ren, Bing, Gingeras, Thomas, Gilbert, David M, Groudine, Mark, Bender, Michael, Kaul, Rajinder, Canfield, Theresa, Giste, Erica, Johnson, Audra, Zhang, Mia, Balasundaram, Gayathri, Byron, Rachel, Roach, Vaughan, Sabo, Peter J, Sandstrom, Richard, Stehling, A Sandra, Thurman, Robert E, Weissman, Sherman M, Cayting, Philip, Hariharan, Manoj, Lian, Jin, Cheng, Yong, Landt, Stephen G, Ma, Zhihai, Wold, Barbara J, Dekker, Job, Crawford, Gregory E, Keller, Cheryl A, Wu, Weisheng, Morrissey, Christopher, Kumar, Swathi A, Mishra, Tejaswini, Jain, Deepti, Byrska-Bishop, Marta, Blankenberg, Daniel, Lajoie, Bryan R, Jain, Gaurav, Sanyal, Amartya, Chen, Kaun-Bei, Denas, Olgert, Taylor, James, Blobel, Gerd A, Weiss, Mitchell J, Pimkin, Max, Deng, Wulan, Marinov, Georgi K, Williams, Brian A, Fisher-Aylor, Katherine I, Desalvo, Gilberto, Kiralusha, Anthony, Trout, Diane, Amrhein, Henry, Mortazavi, Ali, Edsall, Lee, McCleary, David, Kuan, Samantha, Shen, Yin, Yue, Feng, Ye, Zhen, Davis, Carrie A, Zaleski, Chris, Jha, Sonali, Xue, Chenghai, Dobin, Alex, Lin, Wei, Fastuca, Meagan, Wang, Huaien, Guigo, Roderic, Djebali, Sarah, Lagarde, Julien, Ryba, Tyrone, Sasaki, Takayo, Malladi, Venkat S, Cline, Melissa S, Kirkup, Vanessa M, Learned, Katrina, Rosenbloom, Kate R, Kent, W James, Feingold, Elise A, Good, Peter J, Pazin, Michael, Lowdon, Rebecca F, Adams, Leslie B
Published in Genome biology (13.08.2012)
Published in Genome biology (13.08.2012)
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Journal Article
SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates
Warrier, Tushar, El Farran, Chadi, Zeng, Yingying, Ho, Benedict Shao Quan, Bao, Qiuye, Zheng, Zi Hao, Bi, Xuezhi, Ng, Huck Hui, Ong, Derrick Sek Tong, Chu, Justin Jang Hann, Sanyal, Amartya, Fullwood, Melissa Jane, Collins, James J, Li, Hu, Xu, Jian, Loh, Yuin-Han
Published in Nucleic acids research (22.07.2022)
Published in Nucleic acids research (22.07.2022)
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Journal Article
From cells to chromatin: Capturing snapshots of genome organization with 5C technology
Ferraiuolo, Maria A., Sanyal, Amartya, Naumova, Natalia, Dekker, Job, Dostie, Josée
Published in Methods (San Diego, Calif.) (01.11.2012)
Published in Methods (San Diego, Calif.) (01.11.2012)
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