AI powered quantification of nuclear morphology in cancers enables prediction of genome instability and prognosis
Abel, John, Jain, Suyog, Rajan, Deepta, Padigela, Harshith, Leidal, Kenneth, Prakash, Aaditya, Conway, Jake, Nercessian, Michael, Kirkup, Christian, Javed, Syed Ashar, Biju, Raymond, Harguindeguy, Natalia, Shenker, Daniel, Indorf, Nicholas, Sanghavi, Darpan, Egger, Robert, Trotter, Benjamin, Gerardin, Ylaine, Brosnan-Cashman, Jacqueline A., Dhoot, Aditya, Montalto, Michael C., Parmar, Chintan, Wapinski, Ilan, Khosla, Archit, Drage, Michael G., Yu, Limin, Taylor-Weiner, Amaro
Published in NPJ precision oncology (19.06.2024)
Published in NPJ precision oncology (19.06.2024)
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Journal Article
122 Quantification of tumor infiltrating lymphocytes (TILs) from pathology slides reflects molecular immune phenotypes
Shen, Ciyue, Nofallah, Shima, Conway, Jake, Parmar, Chintan, Drage, Michael G, Najdawi, Fedaa, Sanghavi, Darpan T, Yu, Limin, Biju, Raymond, Borders, Daniel, Bronnimann, Matthew, Chambre, Laura, Finberg, Issac, Glickman, Jonathan, Griffin, Michael, Gupta, Sidharth, Harguindeguy, Natalia, Le, Nhat, Hennek, Stephanie, Javed, Syed Ashar, Kirkup, Christian, Markey, Miles, Nercessian, Michael, Shenker, Daniel, Srinivasan, Sandhya, Valaboju, Vignesh, Mercedes, Samuel AV, Rahsepar, Bahar, Leung, Ryan, Khosla, Archit, Glass, Benjamin, Taylor-Weiner, Amaro, Gerardin, Ylaine, Abel, John
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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Journal Article
Abstract 7402: Foundation AI models predict molecular measurements of tumor purity
Gerardin, Ylaine, Shenker, Daniel, Hipp, Jennifer, Harguindeguy, Natalia, Juyal, Dinkar, Shah, Chintan, Javed, Syed Ashar, Thibault, Marc, Nercessian, Michael, Sanghavi, Darpan, Trotter, Benjamin, Leung, Ryan
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Journal Article
Abstract 6179: Machine learning (ML)-spatial quantification of the tumor microenvironment (TME) identifies differences associated with response to bintrafusp alfa (BA) vs pembrolizumab (PEM) treatment in the Phase 3 INTR@PID Lung 037 study
Abel, John, Machl, Andreas, Gerhold-Ay, Aslihan, Yu, Limin, Sanghavi, Darpan, Trotter, Ben, Patel, Neel, Gerardin, Ylaine, Srinivasan, Ramprakash, Brutus, Sergine, Mrowiec, Thomas
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Journal Article
110 Deep learning models identify key tumor microenvironment features associated with genetic signatures of UV mutagenesis and alkylating agent treatment in melanoma
Nofallah, Shima, Sanghavi, Darpan T, Gupta, Sidharth, Shen, Ciyue, Le, Nhat, Yu, Limin, Rahsepar, Bahar, Leung, Ryan, Glass, Benjamin, Taylor-Weiner, Amaro, Gerardin, Ylaine, Abel, John, Conway, Jake
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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Journal Article
Unsupervised Learning with Self-Organizing Spiking Neural Networks
Hazan, Hananel, Saunders, Daniel, Sanghavi, Darpan T., Siegelmann, Hava, Kozma, Robert
Published in 2018 International Joint Conference on Neural Networks (IJCNN) (01.07.2018)
Published in 2018 International Joint Conference on Neural Networks (IJCNN) (01.07.2018)
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Conference Proceeding
PLUTO: Pathology-Universal Transformer
Juyal, Dinkar, Padigela, Harshith, Shah, Chintan, Shenker, Daniel, Harguindeguy, Natalia, Liu, Yi, Martin, Blake, Zhang, Yibo, Nercessian, Michael, Markey, Miles, Finberg, Isaac, Luu, Kelsey, Borders, Daniel, Javed, Syed Ashar, Krause, Emma, Biju, Raymond, Sood, Aashish, Ma, Allen, Nyman, Jackson, Shamshoian, John, Chhor, Guillaume, Sanghavi, Darpan, Thibault, Marc, Yu, Limin, Najdawi, Fedaa, Hipp, Jennifer A, Fahy, Darren, Glass, Benjamin, Walk, Eric, Abel, John, Pokkalla, Harsha, Beck, Andrew H, Grullon, Sean
Year of Publication 13.05.2024
Year of Publication 13.05.2024
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Journal Article
Improved statistical benchmarking of digital pathology models using pairwise frames evaluation
Gerardin, Ylaine, Shamshoian, John, Shen, Judy, Le, Nhat, Prezioso, Jamie, Abel, John, Finberg, Isaac, Borders, Daniel, Biju, Raymond, Nercessian, Michael, Prasad, Vaed, Lee, Joseph, Wyman, Spencer, Gupta, Sid, Emerson, Abigail, Rahsepar, Bahar, Sanghavi, Darpan, Leung, Ryan, Yu, Limin, Khosla, Archit, Taylor-Weiner, Amaro
Year of Publication 07.06.2023
Year of Publication 07.06.2023
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Journal Article
Lattice Map Spiking Neural Networks (LM-SNNs) for Clustering and Classifying Image Data
Hazan, Hananel, Saunders, Daniel J, Sanghavi, Darpan T, Siegelmann, Hava, Kozma, Robert
Year of Publication 04.06.2019
Year of Publication 04.06.2019
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Journal Article
BindsNET: A machine learning-oriented spiking neural networks library in Python
Hazan, Hananel, Saunders, Daniel J, Khan, Hassaan, Sanghavi, Darpan T, Siegelmann, Hava T, Kozma, Robert
Published in arXiv.org (10.12.2018)
Published in arXiv.org (10.12.2018)
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Paper
Journal Article
Unsupervised Learning with Self-Organizing Spiking Neural Networks
Hazan, Hananel, Saunders, Daniel J, Sanghavi, Darpan T, Siegelmann, Hava T, Kozma, Robert
Published in arXiv.org (24.07.2018)
Published in arXiv.org (24.07.2018)
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Paper
Journal Article
PLUTO: Pathology-Universal Transformer
Juyal, Dinkar, Padigela, Harshith, Shah, Chintan, Shenker, Daniel, Harguindeguy, Natalia, Liu, Yi, Blake, Martin, Zhang, Yibo, Nercessian, Michael, Markey, Miles, Finberg, Isaac, Luu, Kelsey, Borders, Daniel, Syed Ashar Javed, Krause, Emma, Biju, Raymond, Sood, Aashish, Ma, Allen, Nyman, Jackson, Shamshoian, John, Chhor, Guillaume, Sanghavi, Darpan, Thibault, Marc, Yu, Limin, Najdawi, Fedaa, Hipp, Jennifer A, Fahy, Darren, Glass, Benjamin, Walk, Eric, Abel, John, Pokkalla, Harsha, Beck, Andrew H, Grullon, Sean
Published in arXiv.org (13.05.2024)
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Published in arXiv.org (13.05.2024)
Paper
Improved statistical benchmarking of digital pathology models using pairwise frames evaluation
Gerardin, Ylaine, Shamshoian, John, Shen, Judy, Le, Nhat, Prezioso, Jamie, Abel, John, Finberg, Isaac, Borders, Daniel, Biju, Raymond, Nercessian, Michael, Prasad, Vaed, Lee, Joseph, Wyman, Spencer, Gupta, Sid, Emerson, Abigail, Rahsepar, Bahar, Sanghavi, Darpan, Leung, Ryan, Yu, Limin, Khosla, Archit, Taylor-Weiner, Amaro
Published in arXiv.org (07.06.2023)
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Published in arXiv.org (07.06.2023)
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