Mutual exclusivity analysis identifies oncogenic network modules
Ciriello, Giovanni, Cerami, Ethan, Sander, Chris, Schultz, Nikolaus
Published in Genome research (01.02.2012)
Published in Genome research (01.02.2012)
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Genome-wide analysis of noncoding regulatory mutations in cancer
Weinhold, Nils, Jacobsen, Anders, Schultz, Nikolaus, Sander, Chris, Lee, William
Published in Nature genetics (01.11.2014)
Published in Nature genetics (01.11.2014)
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Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
Betel, Doron, Koppal, Anjali, Agius, Phaedra, Sander, Chris, Leslie, Christina
Published in Genome biology (01.01.2010)
Published in Genome biology (01.01.2010)
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Emerging landscape of oncogenic signatures across human cancers
Ciriello, Giovanni, Miller, Martin L, Aksoy, Bülent Arman, Senbabaoglu, Yasin, Schultz, Nikolaus, Sander, Chris
Published in Nature genetics (01.10.2013)
Published in Nature genetics (01.10.2013)
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Protein design and variant prediction using autoregressive generative models
Shin, Jung-Eun, Riesselman, Adam J, Kollasch, Aaron W, McMahon, Conor, Simon, Elana, Sander, Chris, Manglik, Aashish, Kruse, Andrew C, Marks, Debora S
Published in Nature communications (23.04.2021)
Published in Nature communications (23.04.2021)
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Mutation effects predicted from sequence co-variation
Hopf, Thomas A, Ingraham, John B, Poelwijk, Frank J, Schärfe, Charlotta P I, Springer, Michael, Sander, Chris, Marks, Debora S
Published in Nature biotechnology (01.02.2017)
Published in Nature biotechnology (01.02.2017)
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The reactome pathway knowledgebase 2022
Gillespie, Marc, Jassal, Bijay, Stephan, Ralf, Milacic, Marija, Rothfels, Karen, Senff-Ribeiro, Andrea, Griss, Johannes, Sevilla, Cristoffer, Matthews, Lisa, Gong, Chuqiao, Deng, Chuan, Varusai, Thawfeek, Ragueneau, Eliot, Haider, Yusra, May, Bruce, Shamovsky, Veronica, Weiser, Joel, Brunson, Timothy, Sanati, Nasim, Beckman, Liam, Shao, Xiang, Fabregat, Antonio, Sidiropoulos, Konstantinos, Murillo, Julieth, Viteri, Guilherme, Cook, Justin, Shorser, Solomon, Bader, Gary, Demir, Emek, Sander, Chris, Haw, Robin, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics
Luna, Augustin, Elloumi, Fathi, Varma, Sudhir, Wang, Yanghsin, Rajapakse, Vinodh N, Aladjem, Mirit I, Robert, Jacques, Sander, Chris, Pommier, Yves, Reinhold, William C
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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A Role for Neuronal piRNAs in the Epigenetic Control of Memory-Related Synaptic Plasticity
Rajasethupathy, Priyamvada, Antonov, Igor, Sheridan, Robert, Frey, Sebastian, Sander, Chris, Tuschl, Thomas, Kandel, Eric R.
Published in Cell (27.04.2012)
Published in Cell (27.04.2012)
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Genomic and transcriptomic hallmarks of poorly differentiated and anaplastic thyroid cancers
Landa, Iñigo, Ibrahimpasic, Tihana, Boucai, Laura, Sinha, Rileen, Knauf, Jeffrey A, Shah, Ronak H, Dogan, Snjezana, Ricarte-Filho, Julio C, Krishnamoorthy, Gnana P, Xu, Bin, Schultz, Nikolaus, Berger, Michael F, Sander, Chris, Taylor, Barry S, Ghossein, Ronald, Ganly, Ian, Fagin, James A
Published in The Journal of clinical investigation (01.03.2016)
Published in The Journal of clinical investigation (01.03.2016)
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Mutational landscape determines sensitivity to PD-1 blockade in non–small cell lung cancer
Rizvi, Naiyer A., Hellmann, Matthew D., Snyder, Alexandra, Kvistborg, Pia, Makarov, Vladimir, Havel, Jonathan J., Lee, William, Yuan, Jianda, Wong, Phillip, Ho, Teresa S., Miller, Martin L., Rekhtman, Natasha, Moreira, Andre L., Ibrahim, Fawzia, Bruggeman, Cameron, Gasmi, Billel, Zappasodi, Roberta, Maeda, Yuka, Sander, Chris, Garon, Edward B., Merghoub, Taha, Wolchok, Jedd D., Schumacher, Ton N., Chan, Timothy A.
Published in Science (American Association for the Advancement of Science) (03.04.2015)
Published in Science (American Association for the Advancement of Science) (03.04.2015)
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Protein 3D structure computed from evolutionary sequence variation
Marks, Debora S, Colwell, Lucy J, Sheridan, Robert, Hopf, Thomas A, Pagnani, Andrea, Zecchina, Riccardo, Sander, Chris
Published in PloS one (07.12.2011)
Published in PloS one (07.12.2011)
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Inferring protein 3D structure from deep mutation scans
Rollins, Nathan J, Brock, Kelly P, Poelwijk, Frank J, Stiffler, Michael A, Gauthier, Nicholas P, Sander, Chris, Marks, Debora S
Published in Nature genetics (01.07.2019)
Published in Nature genetics (01.07.2019)
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Structured States of Disordered Proteins from Genomic Sequences
Toth-Petroczy, Agnes, Palmedo, Perry, Ingraham, John, Hopf, Thomas A., Berger, Bonnie, Sander, Chris, Marks, Debora S.
Published in Cell (22.09.2016)
Published in Cell (22.09.2016)
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Direct-coupling analysis of residue coevolution captures native contacts across many protein families
Morcos, Faruck, Pagnani, Andrea, Lunt, Bryan, Bertolino, Arianna, Marks, Debora S, Sander, Chris, Zecchina, Riccardo, Onuchic, José N, Hwa, Terence, Weigt, Martin
Published in Proceedings of the National Academy of Sciences - PNAS (06.12.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (06.12.2011)
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Pattern discovery and cancer gene identification in integrated cancer genomic data
Mo, Qianxing, Wang, Sijian, Seshan, Venkatraman E., Olshen, Adam B., Schultz, Nikolaus, Sander, Chris, Powers, R. Scott, Ladanyi, Marc, Shen, Ronglai
Published in Proceedings of the National Academy of Sciences - PNAS (12.03.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (12.03.2013)
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Pathway Commons 2019 Update: integration, analysis and exploration of pathway data
Rodchenkov, Igor, Babur, Ozgun, Luna, Augustin, Aksoy, Bulent Arman, Wong, Jeffrey V, Fong, Dylan, Franz, Max, Siper, Metin Can, Cheung, Manfred, Wrana, Michael, Mistry, Harsh, Mosier, Logan, Dlin, Jonah, Wen, Qizhi, O’Callaghan, Caitlin, Li, Wanxin, Elder, Geoffrey, Smith, Peter T, Dallago, Christian, Cerami, Ethan, Gross, Benjamin, Dogrusoz, Ugur, Demir, Emek, Bader, Gary D, Sander, Chris
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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