Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data
Guo, Yan, Sheng, Quanhu, Li, Jiang, Ye, Fei, Samuels, David C, Shyr, Yu
Published in PloS one (20.08.2013)
Published in PloS one (20.08.2013)
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Journal Article
Genome measures used for quality control are dependent on gene function and ancestry
Wang, Jing, Raskin, Leon, Samuels, David C, Shyr, Yu, Guo, Yan
Published in Bioinformatics (01.02.2015)
Published in Bioinformatics (01.02.2015)
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Journal Article
Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis
Guo, Yan, Dai, Yulin, Yu, Hui, Zhao, Shilin, Samuels, David C., Shyr, Yu
Published in Genomics (San Diego, Calif.) (01.03.2017)
Published in Genomics (San Diego, Calif.) (01.03.2017)
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Journal Article
Identification of serum metabolites associating with chronic kidney disease progression and anti-fibrotic effect of 5-methoxytryptophan
Chen, Dan-Qian, Cao, Gang, Chen, Hua, Argyopoulos, Christos P., Yu, Hui, Su, Wei, Chen, Lin, Samuels, David C., Zhuang, Shougang, Bayliss, George P., Zhao, Shilin, Yu, Xiao-Yong, Vaziri, Nosratola D., Wang, Ming, Liu, Dan, Mao, Jia-Rong, Ma, Shi-Xing, Zhao, Jin, Zhang, Yuan, Shang, You-Quan, Kang, Huining, Ye, Fei, Cheng, Xiao-Hong, Li, Xiang-Ri, Zhang, Li, Meng, Mei-Xia, Guo, Yan, Zhao, Ying-Yong
Published in Nature communications (01.04.2019)
Published in Nature communications (01.04.2019)
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Journal Article
Three-stage quality control strategies for DNA re-sequencing data
Guo, Yan, Ye, Fei, Sheng, Quanghu, Clark, Travis, Samuels, David C
Published in Briefings in bioinformatics (01.11.2014)
Published in Briefings in bioinformatics (01.11.2014)
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Journal Article
OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans
Sierra, Beatriz, Triska, Petr, Soares, Pedro, Garcia, Gissel, Perez, Ana B, Aguirre, Eglys, Oliveira, Marisa, Cavadas, Bruno, Regnault, Béatrice, Alvarez, Mayling, Ruiz, Didye, Samuels, David C, Sakuntabhai, Anavaj, Pereira, Luisa, Guzman, Maria G
Published in PLoS pathogens (27.02.2017)
Published in PLoS pathogens (27.02.2017)
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Journal Article
Homeostatic Responses Regulate Selfish Mitochondrial Genome Dynamics in C. elegans
Gitschlag, Bryan L., Kirby, Cait S., Samuels, David C., Gangula, Rama D., Mallal, Simon A., Patel, Maulik R.
Published in Cell metabolism (12.07.2016)
Published in Cell metabolism (12.07.2016)
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Journal Article
Finding the lost treasures in exome sequencing data
Samuels, David C, Han, Leng, Li, Jiang, Quanghu, Sheng, Clark, Travis A, Shyr, Yu, Guo, Yan
Published in Trends in genetics (01.10.2013)
Published in Trends in genetics (01.10.2013)
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Journal Article
Recurrent tissue-specific mtDNA mutations are common in humans
Samuels, David C, Li, Chun, Li, Bingshan, Song, Zhuo, Torstenson, Eric, Boyd Clay, Hayley, Rokas, Antonis, Thornton-Wells, Tricia A, Moore, Jason H, Hughes, Tia M, Hoffman, Robert D, Haines, Jonathan L, Murdock, Deborah G, Mortlock, Douglas P, Williams, Scott M
Published in PLoS genetics (01.11.2013)
Published in PLoS genetics (01.11.2013)
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Journal Article
Universal heteroplasmy of human mitochondrial DNA
Payne, Brendan A I, Wilson, Ian J, Yu-Wai-Man, Patrick, Coxhead, Jonathan, Deehan, David, Horvath, Rita, Taylor, Robert W, Samuels, David C, Santibanez-Koref, Mauro, Chinnery, Patrick F
Published in Human molecular genetics (15.01.2013)
Published in Human molecular genetics (15.01.2013)
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Journal Article
Biomechanical changes of tree shrew posterior sclera during experimental myopia, after retrobulbar vehicle injections, and crosslinking using genipin
Bianco, Gianfranco, Girkin, Christopher A., Samuels, Brian C., Fazio, Massimo A., Grytz, Rafael
Published in Scientific reports (05.09.2024)
Published in Scientific reports (05.09.2024)
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Journal Article
Comparing Phylogeny and the Predicted Pathogenicity of Protein Variations Reveals Equal Purifying Selection across the Global Human mtDNA Diversity
Pereira, Luísa, Soares, Pedro, Radivojac, Predrag, Li, Biao, Samuels, David C.
Published in American journal of human genetics (08.04.2011)
Published in American journal of human genetics (08.04.2011)
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Journal Article
Strategies for processing and quality control of Illumina genotyping arrays
Zhao, Shilin, Jing, Wang, Samuels, David C, Sheng, Quanghu, Shyr, Yu, Guo, Yan
Published in Briefings in bioinformatics (28.09.2018)
Published in Briefings in bioinformatics (28.09.2018)
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Journal Article
The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data
Guo, Yan, Zhao, Shilin, Sheng, Quanhu, Samuels, David C, Shyr, Yu
Published in BMC genomics (03.10.2017)
Published in BMC genomics (03.10.2017)
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Journal Article
Sleep disturbance in adults with cancer: a systematic review of evidence for best practices in assessment and management for clinical practice
Howell, D., Oliver, T.K., Keller-Olaman, S., Davidson, J.R., Garland, S., Samuels, C., Savard, J., Harris, C., Aubin, M., Olson, K., Sussman, J., MacFarlane, J., Taylor, C.
Published in Annals of oncology (01.04.2014)
Published in Annals of oncology (01.04.2014)
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Journal Article
The effect of strand bias in Illumina short-read sequencing data
Guo, Yan, Li, Jiang, Li, Chung-I, Long, Jirong, Samuels, David C, Shyr, Yu
Published in BMC genomics (24.11.2012)
Published in BMC genomics (24.11.2012)
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Journal Article
Mitochondrial aging is accelerated by anti-retroviral therapy through the clonal expansion of mtDNA mutations
Chinnery, Patrick F, Payne, Brendan A I, Wilson, Ian J, Hateley, Charlotte A, Horvath, Rita, Santibanez-Koref, Mauro, Samuels, David C, Price, D Ashley
Published in Nature genetics (01.08.2011)
Published in Nature genetics (01.08.2011)
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Journal Article