Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution
Roscito, Juliana G, Sameith, Katrin, Parra, Genis, Langer, Bjoern E, Petzold, Andreas, Moebius, Claudia, Bickle, Marc, Rodrigues, Miguel Trefaut, Hiller, Michael
Published in Nature communications (09.11.2018)
Published in Nature communications (09.11.2018)
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Journal Article
Fate mapping of hematopoietic stem cells reveals two pathways of native thrombopoiesis
Morcos, Mina N. F., Li, Congxin, Munz, Clara M., Greco, Alessandro, Dressel, Nicole, Reinhardt, Susanne, Sameith, Katrin, Dahl, Andreas, Becker, Nils B., Roers, Axel, Höfer, Thomas, Gerbaulet, Alexander
Published in Nature communications (03.08.2022)
Published in Nature communications (03.08.2022)
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Journal Article
Large-Scale Genetic Perturbations Reveal Regulatory Networks and an Abundance of Gene-Specific Repressors
Kemmeren, Patrick, Sameith, Katrin, van de Pasch, Loes A.L., Benschop, Joris J., Lenstra, Tineke L., Margaritis, Thanasis, O’Duibhir, Eoghan, Apweiler, Eva, van Wageningen, Sake, Ko, Cheuk W., van Heesch, Sebastiaan, Kashani, Mehdi M., Ampatziadis-Michailidis, Giannis, Brok, Mariel O., Brabers, Nathalie A.C.H., Miles, Anthony J., Bouwmeester, Diane, van Hooff, Sander R., van Bakel, Harm, Sluiters, Erik, Bakker, Linda V., Snel, Berend, Lijnzaad, Philip, van Leenen, Dik, Groot Koerkamp, Marian J.A., Holstege, Frank C.P.
Published in Cell (24.04.2014)
Published in Cell (24.04.2014)
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Journal Article
Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly
Sameith, Katrin, Roscito, Juliana G, Hiller, Michael
Published in Briefings in bioinformatics (01.01.2017)
Published in Briefings in bioinformatics (01.01.2017)
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Journal Article
The Specificity and Topology of Chromatin Interaction Pathways in Yeast
Lenstra, Tineke L., Benschop, Joris J., Kim, TaeSoo, Schulze, Julia M., Brabers, Nathalie A.C.H., Margaritis, Thanasis, van de Pasch, Loes A.L., van Heesch, Sebastiaan A.A.C., Brok, Mariel O., Groot Koerkamp, Marian J.A., Ko, Cheuk W., van Leenen, Dik, Sameith, Katrin, van Hooff, Sander R., Lijnzaad, Philip, Kemmeren, Patrick, Hentrich, Thomas, Kobor, Michael S., Buratowski, Stephen, Holstege, Frank C.P.
Published in Molecular cell (20.05.2011)
Published in Molecular cell (20.05.2011)
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Journal Article
Corrigendum: The aryl hydrocarbon receptor regulates lipid mediator production in alveolar macrophages
Maier, Ann-Marie, Huth, Karsten, Alessandrini, Francesca, Henkel, Fiona, Schnautz, Benjamin, Arifovic, Anela, Riols, Fabien, Haid, Mark, Koegler, Anja, Sameith, Katrin, Schmidt-Weber, Carsten B, Esser-von-Bieren, Julia, Ohnmacht, Caspar
Published in Frontiers in immunology (05.06.2023)
Published in Frontiers in immunology (05.06.2023)
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Journal Article
The aryl hydrocarbon receptor regulates lipid mediator production in alveolar macrophages
Maier, Ann-Marie, Huth, Karsten, Alessandrini, Francesca, Schnautz, Benjamin, Arifovic, Anela, Riols, Fabien, Haid, Mark, Koegler, Anja, Sameith, Katrin, Schmidt-Weber, Carsten B, Esser-von-Bieren, Julia, Ohnmacht, Caspar
Published in Frontiers in immunology (04.04.2023)
Published in Frontiers in immunology (04.04.2023)
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Journal Article
Functional Overlap and Regulatory Links Shape Genetic Interactions between Signaling Pathways
van Wageningen, Sake, Kemmeren, Patrick, Lijnzaad, Philip, Margaritis, Thanasis, Benschop, Joris J., de Castro, Inês J., van Leenen, Dik, Groot Koerkamp, Marian J.A., Ko, Cheuk W., Miles, Antony J., Brabers, Nathalie, Brok, Mariel O., Lenstra, Tineke L., Fiedler, Dorothea, Fokkens, Like, Aldecoa, Rodrigo, Apweiler, Eva, Taliadouros, Virginia, Sameith, Katrin, van de Pasch, Loes A.L., van Hooff, Sander R., Bakker, Linda V., Krogan, Nevan J., Snel, Berend, Holstege, Frank C.P.
Published in Cell (10.12.2010)
Published in Cell (10.12.2010)
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Journal Article
A central role for TFIID in the pluripotent transcription circuitry
Pijnappel, W W M Pim, Esch, Daniel, Baltissen, Marijke P A, Wu, Guangming, Mischerikow, Nikolai, Bergsma, Atze J, van der Wal, Erik, Han, Dong Wook, Bruch, Hermann vom, Moritz, Sören, Lijnzaad, Phillip, Altelaar, A F Maarten, Sameith, Katrin, Zaehres, Holm, Heck, Albert J R, Holstege, Frank C P, Schöler, Hans R, Timmers, H T Marc
Published in Nature (London) (28.03.2013)
Published in Nature (London) (28.03.2013)
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Journal Article
Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis
Apweiler, Eva, Sameith, Katrin, Margaritis, Thanasis, Brabers, Nathalie, van de Pasch, Loes, Bakker, Linda V, van Leenen, Dik, Holstege, Frank Cp, Kemmeren, Patrick
Published in BMC genomics (14.06.2012)
Published in BMC genomics (14.06.2012)
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Journal Article
Models and computational strategies linking physiological response to molecular networks from large-scale data
Ortega, Fernando, Sameith, Katrin, Turan, Nil, Compton, Russell, Trevino, Victor, Vannucci, Marina, Falciani, Francesco
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (13.09.2008)
Published in Philosophical transactions of the Royal Society of London. Series A: Mathematical, physical, and engineering sciences (13.09.2008)
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Journal Article
Fragrep: An Efficient Search Tool for Fragmented Patterns in Genomic Sequences
Mosig, Axel, Sameith, Katrin, Stadler, Peter
Published in Genomics, proteomics & bioinformatics (2006)
Published in Genomics, proteomics & bioinformatics (2006)
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Journal Article
Convergent and lineage-specific genomic differences in limb regulatory elements in limbless reptile lineages
Roscito, Juliana Gusson, Sameith, Katrin, Kirilenko, Bogdan Mikhailovich, Hecker, Nikolai, Winkler, Sylke, Dahl, Andreas, Rodrigues, Miguel Trefaut, Hiller, Michael
Published in Cell reports (Cambridge) (18.01.2022)
Published in Cell reports (Cambridge) (18.01.2022)
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Journal Article
3087 – TWO PATHWAYS OF THROMBOPOIESIS IN NATIVE HEMATOPOIESIS
Gerbaulet, Alexander, Munz, Clara, Li, Congxin, Morcos, Mina, Greco, Alessandro, Dressel, Nicole, Reinhardt, Susanne, Sameith, Katrin, Dahl, Andreas, Becker, Nils, Roers, Axel, Höfer, Thomas
Published in Experimental hematology (2022)
Published in Experimental hematology (2022)
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Journal Article
Activation of β-adrenergic receptor signaling prevents glucocorticoid-induced obesity and adipose tissue dysfunction in male mice
Gado, Manuel, Heinrich, Annett, Wiedersich, Denise, Sameith, Katrin, Dahl, Andreas, Alexaki, Vasileia I, Swarbrick, Michael M, Baschant, Ulrike, Grafe, Ingo, Perakakis, Nikolaos, Bornstein, Stefan R, Rauner, Martina, Hofbauer, Lorenz C, Henneicke, Holger
Published in American journal of physiology: endocrinology and metabolism (01.06.2023)
Published in American journal of physiology: endocrinology and metabolism (01.06.2023)
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Journal Article
The genome of the tegu lizard Salvator merianae: combining Illumina, PacBio, and optical mapping data to generate a highly contiguous assembly
Roscito, Juliana G, Sameith, Katrin, Pippel, Martin, Francoijs, Kees-Jan, Winkler, Sylke, Dahl, Andreas, Papoutsoglou, Georg, Myers, Gene, Hiller, Michael
Published in Gigascience (01.12.2018)
Published in Gigascience (01.12.2018)
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Journal Article
A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions
Sameith, Katrin, Amini, Saman, Groot Koerkamp, Marian J A, van Leenen, Dik, Brok, Mariel, Brabers, Nathalie, Lijnzaad, Philip, van Hooff, Sander R, Benschop, Joris J, Lenstra, Tineke L, Apweiler, Eva, van Wageningen, Sake, Snel, Berend, Holstege, Frank C P, Kemmeren, Patrick
Published in BMC biology (23.12.2015)
Published in BMC biology (23.12.2015)
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Journal Article
Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage
Sameith, Katrin, Antczak, Philipp, Marston, Elliot, Turan, Nil, Maier, Dieter, Stankovic, Tanja, Falciani, Francesco
Published in Bioinformatics (15.11.2008)
Published in Bioinformatics (15.11.2008)
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Journal Article
Stratification of pediatric ALL by in vitro cellular responses to DNA double-strand breaks provides insight into the molecular mechanisms underlying clinical response
Marston, Eliot, Weston, Victoria, Jesson, Jennifer, Maina, Esther, McConville, Carmel, Agathanggelou, Angelo, Skowronska, Anna, Mapp, Katie, Sameith, Katrin, Powell, Judith E., Lawson, Sarah, Kearns, Pamela, Falciani, Francesco, Taylor, Malcolm, Stankovic, Tatjana
Published in Blood (01.01.2009)
Published in Blood (01.01.2009)
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