BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers
Bai, Jingwen, Bandla, Chakradhar, Guo, Jiaxin, Vera Alvarez, Roberto, Bai, Mingze, Vizcaíno, Juan Antonio, Moreno, Pablo, Grüning, Björn, Sallou, Olivier, Perez-Riverol, Yasset
Published in Journal of proteome research (02.04.2021)
Published in Journal of proteome research (02.04.2021)
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Journal Article
The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community
Darde, Thomas A, Sallou, Olivier, Becker, Emmanuelle, Evrard, Bertrand, Monjeaud, Cyril, Le Bras, Yvan, Jégou, Bernard, Collin, Olivier, Rolland, Antoine D, Chalmel, Frédéric
Published in Nucleic acids research (01.07.2015)
Published in Nucleic acids research (01.07.2015)
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Journal Article
The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes
Ouedraogo, Marion, Bettembourg, Charles, Bretaudeau, Anthony, Sallou, Olivier, Diot, Christian, Demeure, Olivier, Lecerf, Frédéric
Published in PloS one (28.11.2012)
Published in PloS one (28.11.2012)
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Journal Article
Recommendations for the packaging and containerizing of bioinformatics software [version 2; peer review: 2 approved, 1 approved with reservations]
Gruening, Bjorn, Sallou, Olivier, Moreno, Pablo, da Veiga Leprevost, Felipe, Ménager, Hervé, Søndergaard, Dan, Röst, Hannes, Sachsenberg, Timo, O'Connor, Brian, Madeira, Fábio, Dominguez Del Angel, Victoria, Crusoe, Michael R, Varma, Susheel, Blankenberg, Daniel, Jimenez, Rafael C, Perez-Riverol, Yasset
Published in F1000 research (01.01.2018)
Published in F1000 research (01.01.2018)
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Journal Article
BioShaDock: a community driven bioinformatics shared Docker-based tools registry [version 1; peer review: 2 approved]
Moreews, François, Sallou, Olivier, Ménager, Hervé, Le bras, Yvan, Monjeaud, Cyril, Blanchet, Christophe, Collin, Olivier
Published in F1000 research (2015)
Published in F1000 research (2015)
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Journal Article
High-Resolution Profiling of Novel Transcribed Regions During Rat Spermatogenesis1
Chalmel, Frédéric, Lardenois, Aurélie, Evrard, Bertrand, Rolland, Antoine D, Sallou, Olivier, Dumargne, Marie-Charlotte, Coiffec, Isabelle, Collin, Olivier, Primig, Michael, Jégou, Bernard
Published in Biology of reproduction (01.07.2014)
Published in Biology of reproduction (01.07.2014)
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Journal Article
SRD: a Staphylococcus regulatory RNA database
Sassi, Mohamed, Augagneur, Yoann, Mauro, Tony, Ivain, Lorraine, Chabelskaya, Svetlana, Hallier, Marc, Sallou, Olivier, Felden, Brice
Published in RNA (Cambridge) (01.05.2015)
Published in RNA (Cambridge) (01.05.2015)
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Journal Article
GO-Docker: A Batch Scheduling System with Docker Containers
Sallou, Olivier, Monjeaud, Cyril
Published in 2015 IEEE International Conference on Cluster Computing (01.09.2015)
Published in 2015 IEEE International Conference on Cluster Computing (01.09.2015)
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Conference Proceeding
High-resolution profiling of novel transcribed regions during rat spermatogenesis
Chalmel, Frédéric, Lardenois, Aurélie, Evrard, Bertrand, Rolland, Antoine D, Sallou, Olivier, Dumargne, Marie-Charlotte, Coiffec, Isabelle, Collin, Olivier, Primig, Michael, Jégou, Bernard
Published in Biology of reproduction (01.07.2014)
Published in Biology of reproduction (01.07.2014)
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Journal Article
TOXsIgN: a cross-species repository for toxicogenomic signatures
Darde, Thomas A, Gaudriault, Pierre, Beranger, Rémi, Lancien, Clément, Caillarec-Joly, Annaëlle, Sallou, Olivier, Bonvallot, Nathalie, Chevrier, Cécile, Mazaud-Guittot, Séverine, Jégou, Bernard, Collin, Olivier, Becker, Emmanuelle, Rolland, Antoine D, Chalmel, Frédéric
Published in Bioinformatics (15.06.2018)
Published in Bioinformatics (15.06.2018)
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Journal Article
GPSy: a cross-species gene prioritization system for conserved biological processes--application in male gamete development
Britto, Ramona, Sallou, Olivier, Collin, Olivier, Michaux, Grégoire, Primig, Michael, Chalmel, Frédéric
Published in Nucleic acids research (01.07.2012)
Published in Nucleic acids research (01.07.2012)
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Journal Article
Community-driven development for computational biology at Sprints, Hackathons and Codefests
Möller, Steffen, Afgan, Enis, Banck, Michael, Bonnal, Raoul J P, Booth, Timothy, Chilton, John, Cock, Peter J A, Gumbel, Markus, Harris, Nomi, Holland, Richard, Kalaš, Matúš, Kaján, László, Kibukawa, Eri, Powel, David R, Prins, Pjotr, Quinn, Jacqueline, Sallou, Olivier, Strozzi, Francesco, Seemann, Torsten, Sloggett, Clare, Soiland-Reyes, Stian, Spooner, William, Steinbiss, Sascha, Tille, Andreas, Travis, Anthony J, Guimera, Roman, Katayama, Toshiaki, Chapman, Brad A
Published in BMC bioinformatics (27.11.2014)
Published in BMC bioinformatics (27.11.2014)
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Journal Article
Recommendations for the packaging and containerizing of bioinformatics software [version 1; peer review: 2 approved with reservations]
Gruening, Bjorn, Sallou, Olivier, Moreno, Pablo, da Veiga Leprevost, Felipe, Ménager, Hervé, Søndergaard, Dan, Röst, Hannes, Sachsenberg, Timo, O'Connor, Brian, Madeira, Fábio, Dominguez Del Angel, Victoria, Crusoe, Michael R, Varma, Susheel, Blankenberg, Daniel, Jimenez, Rafael C, Perez-Riverol, Yasset
Published in F1000 research (2018)
Published in F1000 research (2018)
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Journal Article
AnnotQTL: a new tool to gather functional and comparative information on a genomic region
Lecerf, F., Bretaudeau, A., Sallou, O., Desert, C., Blum, Y., Lagarrigue, S., Demeure, O.
Published in Nucleic acids research (01.07.2011)
Published in Nucleic acids research (01.07.2011)
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Journal Article
BioContainers Registry: searching for bioinformatics tools, packages and containers
Bai, Jingwen, Chakradhar Reddy Bandla, Guo, Jiaxin, Roberto Vera Alvarez, Vizcaino, Juan Antonio, Bai, Mingze, Pablo Andres Moreno Cortez, Gruning, Bjorn Andreas, Sallou, Olivier, Perez-Riverol, Yasset
Published in bioRxiv (22.07.2020)
Published in bioRxiv (22.07.2020)
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Paper
AnnotQTL: a new tool to gather functional and comparative information on a genomic region
Lecerf, Frederic, Bretaudeau, Anthony, Sallou, Olivier, Désert, Colette, Blum, Yuna, Lagarrigue, Sandrine, Demeure, Olivier
Published in JOBIM 2011. 2011; 12. Journées Ouvertes en Biologie, Informatique et Mathématiques, Paris, FRA, 2011-06-28-2011-07-01, n.p (2011)
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Published in JOBIM 2011. 2011; 12. Journées Ouvertes en Biologie, Informatique et Mathématiques, Paris, FRA, 2011-06-28-2011-07-01, n.p (2011)
Conference Proceeding