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Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations
Salk, Jesse J., Schmitt, Michael W., Loeb, Lawrence A.
Published in Nature reviews. Genetics (01.05.2018)
Published in Nature reviews. Genetics (01.05.2018)
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The influence of subclonal resistance mutations on targeted cancer therapy
Schmitt, Michael W., Loeb, Lawrence A., Salk, Jesse J.
Published in Nature reviews. Clinical oncology (01.06.2016)
Published in Nature reviews. Clinical oncology (01.06.2016)
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Direct quantification of in vivo mutagenesis and carcinogenesis using duplex sequencing
Valentine, Charles C., Young, Robert R., Fielden, Mark R., Kulkarni, Rohan, Williams, Lindsey N., Li, Tan, Minocherhomji, Sheroy, Salk, Jesse J.
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2020)
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Duplex sequencing identifies genomic features that determine susceptibility to benzo(a)pyrene-induced in vivo mutations
LeBlanc, Danielle P. M., Meier, Matthew, Lo, Fang Yin, Schmidt, Elizabeth, Valentine, Charles, Williams, Andrew, Salk, Jesse J., Yauk, Carole L., Marchetti, Francesco
Published in BMC genomics (28.07.2022)
Published in BMC genomics (28.07.2022)
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Quantification of measurable residual disease using duplex sequencing in adults with acute myeloid leukemia
Dillon, Laura W., Higgins, Jake, Nasif, Hassan, Othus, Megan, Beppu, Lan, Smith, Thomas H., Schmidt, Elizabeth, Valentine III, Charles C., Salk, Jesse J., Wood, Brent L, Erba, Harry P., Radich, Jerald P., Hourigan, Christopher S.
Published in Haematologica (Roma) (01.02.2024)
Published in Haematologica (Roma) (01.02.2024)
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Error-corrected next-generation sequencing to advance nonclinical genotoxicity and carcinogenicity testing
Marchetti, Francesco, Cardoso, Renato, Chen, Connie L., Douglas, George R., Elloway, Joanne, Escobar, Patricia A., Harper Jr, Tod, Heflich, Robert H., Kidd, Darren, Lynch, Anthony M., Myers, Meagan B., Parsons, Barbara L., Salk, Jesse J., Settivari, Raja S., Smith-Roe, Stephanie L., Witt, Kristine L., Yauk, Carole, Young, Robert R., Zhang, Shaofei, Minocherhomji, Sheroy
Published in Nature reviews. Drug discovery (01.03.2023)
Published in Nature reviews. Drug discovery (01.03.2023)
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Extensive subclonal mutational diversity in human colorectal cancer and its significance
Loeb, Lawrence A., Kohrn, Brendan F., Loubet-Senear, Kaitlyn J., Dunn, Yasmin J., Ahn, Eun Hyun, O’Sullivan, Jacintha N., Salk, Jesse J., Bronner, Mary P., Beckman, Robert A.
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
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Ultra-Sensitive TP53 Sequencing for Cancer Detection Reveals Progressive Clonal Selection in Normal Tissue over a Century of Human Lifespan
Salk, Jesse J., Loubet-Senear, Kaitlyn, Maritschnegg, Elisabeth, Valentine, Charles C., Williams, Lindsey N., Higgins, Jacob E., Horvat, Reinhard, Vanderstichele, Adriaan, Nachmanson, Daniela, Baker, Kathryn T., Emond, Mary J., Loter, Emily, Tretiakova, Maria, Soussi, Thierry, Loeb, Lawrence A., Zeillinger, Robert, Speiser, Paul, Risques, Rosa Ana
Published in Cell reports (Cambridge) (02.07.2019)
Published in Cell reports (Cambridge) (02.07.2019)
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Optimization of DNA polymerase mutation rates during bacterial evolution
Loh, Ern, Salk, Jesse J, Loeb, Lawrence A
Published in Proceedings of the National Academy of Sciences - PNAS (19.01.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (19.01.2010)
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svCapture: efficient and specific detection of very low frequency structural variant junctions by error-minimized capture sequencing
Wilson, Thomas E, Ahmed, Samreen, Higgins, Jake, Salk, Jesse J, Glover, Thomas W
Published in NAR genomics and bioinformatics (01.06.2023)
Published in NAR genomics and bioinformatics (01.06.2023)
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Decreased Mitochondrial DNA Mutagenesis in Human Colorectal Cancer
Ericson, Nolan G., Kulawiec, Mariola, Vermulst, Marc, Sheahan, Kieran, O'Sullivan, Jacintha, Salk, Jesse J., Bielas, Jason H.
Published in PLoS genetics (01.06.2012)
Published in PLoS genetics (01.06.2012)
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Hypermutable DNA chronicles the evolution of human colon cancer
Naxerova, Kamila, Brachtel, Elena, Salk, Jesse J., Seese, Aaron M., Power, Karen, Abbasi, Bardia, Snuderl, Matija, Chiang, Sarah, Kasif, Simon, Jain, Rakesh K.
Published in Proceedings of the National Academy of Sciences - PNAS (06.05.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (06.05.2014)
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Ultra-accurate Duplex Sequencing for the assessment of pretreatment ABL1 kinase domain mutations in Ph+ ALL
Short, Nicholas J., Kantarjian, Hagop, Kanagal-Shamanna, Rashmi, Sasaki, Koji, Ravandi, Farhad, Cortes, Jorge, Konopleva, Marina, Issa, Ghayas C., Kornblau, Steven M., Garcia-Manero, Guillermo, Garris, Rebecca, Higgins, Jake, Pratt, Gabriel, Williams, Lindsey N., Valentine, Charles C., Rivera, Victor M., Pritchard, Justin, Salk, Jesse J., Radich, Jerald, Jabbour, Elias
Published in Blood cancer journal (New York) (26.05.2020)
Published in Blood cancer journal (New York) (26.05.2020)
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Risks of double-counting in deep sequencing
Schmitt, Michael W., Fox, Edward J., Salk, Jesse J.
Published in Proceedings of the National Academy of Sciences - PNAS (22.04.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (22.04.2014)
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Clonal expansions in ulcerative colitis identify patients with neoplasia
Salk, Jesse J, Salipante, Stephen J, Risques, Rosa Ana, Crispin, David A, Li, Lin, Bronner, Mary P, Brentnall, Teresa A, Rabinovitch, Peter S, Horwitz, Marshall S, Loeb, Lawrence A
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2009)
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