Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations
Salk, Jesse J., Schmitt, Michael W., Loeb, Lawrence A.
Published in Nature reviews. Genetics (01.05.2018)
Published in Nature reviews. Genetics (01.05.2018)
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Journal Article
The influence of subclonal resistance mutations on targeted cancer therapy
Schmitt, Michael W., Loeb, Lawrence A., Salk, Jesse J.
Published in Nature reviews. Clinical oncology (01.06.2016)
Published in Nature reviews. Clinical oncology (01.06.2016)
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Journal Article
Direct quantification of in vivo mutagenesis and carcinogenesis using duplex sequencing
Valentine, Charles C., Young, Robert R., Fielden, Mark R., Kulkarni, Rohan, Williams, Lindsey N., Li, Tan, Minocherhomji, Sheroy, Salk, Jesse J.
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2020)
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Journal Article
Duplex sequencing identifies genomic features that determine susceptibility to benzo(a)pyrene-induced in vivo mutations
LeBlanc, Danielle P M, Meier, Matthew, Lo, Fang Yin, Schmidt, Elizabeth, Valentine, 3rd, Charles, Williams, Andrew, Salk, Jesse J, Yauk, Carole L, Marchetti, Francesco
Published in BMC genomics (28.07.2022)
Published in BMC genomics (28.07.2022)
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Journal Article
Ultra-Sensitive TP53 Sequencing for Cancer Detection Reveals Progressive Clonal Selection in Normal Tissue over a Century of Human Lifespan
Salk, Jesse J., Loubet-Senear, Kaitlyn, Maritschnegg, Elisabeth, Valentine, Charles C., Williams, Lindsey N., Higgins, Jacob E., Horvat, Reinhard, Vanderstichele, Adriaan, Nachmanson, Daniela, Baker, Kathryn T., Emond, Mary J., Loter, Emily, Tretiakova, Maria, Soussi, Thierry, Loeb, Lawrence A., Zeillinger, Robert, Speiser, Paul, Risques, Rosa Ana
Published in Cell reports (Cambridge) (02.07.2019)
Published in Cell reports (Cambridge) (02.07.2019)
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Journal Article
Extensive subclonal mutational diversity in human colorectal cancer and its significance
Loeb, Lawrence A., Kohrn, Brendan F., Loubet-Senear, Kaitlyn J., Dunn, Yasmin J., Ahn, Eun Hyun, O’Sullivan, Jacintha N., Salk, Jesse J., Bronner, Mary P., Beckman, Robert A.
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2019)
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Journal Article
Quantification of measurable residual disease using duplex sequencing in adults with acute myeloid leukemia
Dillon, Laura W, Higgins, Jake, Nasif, Hassan, Othus, Megan, Beppu, Lan, Smith, Thomas H, Schmidt, Elizabeth, Valentine Iii, Charles C, Salk, Jesse J, Wood, Brent L, Erba, Harry P, Radich, Jerald P, Hourigan, Christopher S
Published in Haematologica (Roma) (01.02.2024)
Published in Haematologica (Roma) (01.02.2024)
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Journal Article
Liver-on-chip model and application in predictive genotoxicity and mutagenicity of drugs
Kopp, B., Khawam, A., Di Perna, K., Lenart, D., Vinette, M., Silva, R., Zanoni, T.B., Rore, C., Guenigault, G., Richardson, E., Kostrzewski, T., Boswell, A., Van, P., Valentine III, C., Salk, J., Hamel, A.
Published in Mutation research. Genetic toxicology and environmental mutagenesis (01.05.2024)
Published in Mutation research. Genetic toxicology and environmental mutagenesis (01.05.2024)
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Journal Article
Optimization of DNA polymerase mutation rates during bacterial evolution
Loh, Ern, Salk, Jesse J, Loeb, Lawrence A
Published in Proceedings of the National Academy of Sciences - PNAS (19.01.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (19.01.2010)
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Journal Article
Decreased mitochondrial DNA mutagenesis in human colorectal cancer
Ericson, Nolan G, Kulawiec, Mariola, Vermulst, Marc, Sheahan, Kieran, O'Sullivan, Jacintha, Salk, Jesse J, Bielas, Jason H
Published in PLoS genetics (01.06.2012)
Published in PLoS genetics (01.06.2012)
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Journal Article
Hypermutable DNA chronicles the evolution of human colon cancer
Naxerova, Kamila, Brachtel, Elena, Salk, Jesse J, Seese, Aaron M, Power, Karen, Abbasi, Bardia, Snuderl, Matija, Chiang, Sarah, Kasif, Simon, Jain, Rakesh K
Published in Proceedings of the National Academy of Sciences - PNAS (06.05.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (06.05.2014)
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Journal Article
svCapture: efficient and specific detection of very low frequency structural variant junctions by error-minimized capture sequencing
Wilson, Thomas E, Ahmed, Samreen, Higgins, Jake, Salk, Jesse J, Glover, Thomas W
Published in NAR genomics and bioinformatics (01.06.2023)
Published in NAR genomics and bioinformatics (01.06.2023)
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Journal Article
Risks of double-counting in deep sequencing
Schmitt, Michael W, Fox, Edward J, Salk, Jesse J
Published in Proceedings of the National Academy of Sciences - PNAS (22.04.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (22.04.2014)
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Journal Article
Ultra-accurate Duplex Sequencing for the assessment of pretreatment ABL1 kinase domain mutations in Ph+ ALL
Short, Nicholas J., Kantarjian, Hagop, Kanagal-Shamanna, Rashmi, Sasaki, Koji, Ravandi, Farhad, Cortes, Jorge, Konopleva, Marina, Issa, Ghayas C., Kornblau, Steven M., Garcia-Manero, Guillermo, Garris, Rebecca, Higgins, Jake, Pratt, Gabriel, Williams, Lindsey N., Valentine, Charles C., Rivera, Victor M., Pritchard, Justin, Salk, Jesse J., Radich, Jerald, Jabbour, Elias
Published in Blood cancer journal (New York) (26.05.2020)
Published in Blood cancer journal (New York) (26.05.2020)
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Journal Article
Clonal expansions in ulcerative colitis identify patients with neoplasia
Salk, Jesse J, Salipante, Stephen J, Risques, Rosa Ana, Crispin, David A, Li, Lin, Bronner, Mary P, Brentnall, Teresa A, Rabinovitch, Peter S, Horwitz, Marshall S, Loeb, Lawrence A
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2009)
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Journal Article
Absorptive capacity, learning, and performance in international joint ventures
Lane, Peter J., Salk, Jane E., Lyles, Marjorie A.
Published in Strategic management journal (01.12.2001)
Published in Strategic management journal (01.12.2001)
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Journal Article