The fitness landscape of HIV-1 gag: advanced modeling approaches and validation of model predictions by in vitro testing
Mann, Jaclyn K, Barton, John P, Ferguson, Andrew L, Omarjee, Saleha, Walker, Bruce D, Chakraborty, Arup, Ndung'u, Thumbi
Published in PLoS computational biology (01.08.2014)
Published in PLoS computational biology (01.08.2014)
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Adolescent BCG revaccination induces a phenotypic shift in CD4+ T cell responses to Mycobacterium tuberculosis
Dintwe, One B, Ballweber Fleming, Lamar, Voillet, Valentin, McNevin, John, Seese, Aaron, Naidoo, Anneta, Omarjee, Saleha, Bekker, Linda-Gail, Kublin, James G, De Rosa, Stephen C, Newell, Evan W, Fiore-Gartland, Andrew, Andersen-Nissen, Erica, McElrath, M. Juliana
Published in Nature communications (18.06.2024)
Published in Nature communications (18.06.2024)
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Journal Article
Clinical and mycological predictors of cryptococcosis-associated immune reconstitution inflammatory syndrome
CHANG, Christina C, DORASAMY, Afton A, LEWIN, Sharon R, FRENCH, Martyn A, GOSNELL, Bernadett I, ELLIOTT, Julian H, SPELMAN, Tim, OMARJEE, Saleha, NARANBHAI, Vivek, COOVADIA, Yacoob, NDUNG'U, Thumbi, MOOSA, Mohamed-Yunus S
Published in AIDS (London) (24.08.2013)
Published in AIDS (London) (24.08.2013)
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Journal Article
Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes
Mann, Jaclyn K, Byakwaga, Helen, Kuang, Xiaomei T, Le, Anh Q, Brumme, Chanson J, Mwimanzi, Philip, Omarjee, Saleha, Martin, Eric, Lee, Guinevere Q, Baraki, Bemuluyigza, Danroth, Ryan, McCloskey, Rosemary, Muzoora, Conrad, Bangsberg, David R, Hunt, Peter W, Goulder, Philip J R, Walker, Bruce D, Harrigan, P Richard, Martin, Jeff N, Ndung'u, Thumbi, Brockman, Mark A, Brumme, Zabrina L
Published in Retrovirology (16.09.2013)
Published in Retrovirology (16.09.2013)
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Journal Article
No evidence for selection of HIV-1 with enhanced gag-protease or Nef function among breakthrough infections in the CAPRISA 004 tenofovir microbicide trial
Chopera, Denis R, Mann, Jaclyn K, Mwimanzi, Philip, Omarjee, Saleha, Kuang, Xiaomei T, Ndabambi, Nonkululeko, Goodier, Sarah, Martin, Eric, Naranbhai, Vivek, Karim, Salim Abdool, Karim, Quarraisha Abdool, Brumme, Zabrina L, Ndung'u, Thumbi, Williamson, Carolyn, Brockman, Mark A
Published in PloS one (28.08.2013)
Published in PloS one (28.08.2013)
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Journal Article
Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design
Ferguson, Andrew L., Mann, Jaclyn K., Omarjee, Saleha, Ndung’u, Thumbi, Walker, Bruce D., Chakraborty, Arup K.
Published in Immunity (Cambridge, Mass.) (21.03.2013)
Published in Immunity (Cambridge, Mass.) (21.03.2013)
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Journal Article
Phase 1 Human Immunodeficiency Virus (HIV) Vaccine Trial to Evaluate the Safety and Immunogenicity of HIV Subtype C DNA and MF59-Adjuvanted Subtype C Envelope Protein
Hosseinipour, Mina C, Innes, Craig, Naidoo, Sarita, Mann, Philipp, Hutter, Julia, Ramjee, Gita, Sebe, Modulakgotla, Maganga, Lucas, Herce, Michael E, deCamp, Allan C, Marshall, Kyle, Dintwe, One, Andersen-Nissen, Erica, Tomaras, Georgia D, Mkhize, Nonhlanhla, Morris, Lynn, Jensen, Ryan, Miner, Maurine D, Pantaleo, Giuseppe, Ding, Song, Van Der Meeren, Olivier, Barnett, Susan W, McElrath, M Juliana, Corey, Lawrence, Kublin, James G
Published in Clinical infectious diseases (23.01.2021)
Published in Clinical infectious diseases (23.01.2021)
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Journal Article
Chemokine Levels and Chemokine Receptor Expression in the Blood and the Cerebrospinal Fluid of HIV-Infected Patients With Cryptococcal Meningitis and Cryptococcosis-Associated Immune Reconstitution Inflammatory Syndrome
Chang, Christina C., Omarjee, Saleha, Lim, Andrew, Spelman, Tim, Gosnell, Bernadett I., Carr, William H., Elliott, Julian H., Moosa, Mohamed-Yunus S., Ndung'u, Thumbi, French, Martyn A., Lewin, Sharon R.
Published in The Journal of infectious diseases (15.11.2013)
Published in The Journal of infectious diseases (15.11.2013)
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Journal Article
Cryptococcosis-IRIS is Associated With Lower Cryptococcus-specific IFN-γ Responses Before Antiretroviral Therapy but Not Higher T-Cell Responses During Therapy
Chang, Christina C., Lim, Andrew, Omarjee, Saleha, Levitz, Stuart M., Gosnell, Bernadett I., Spelman, Tim, Elliott, Julian H., Carr, William H., Moosa, Mohamed-Yunus S., Ndung'u, Thumbi, Lewin, Sharon R., French, Martyn A.
Published in The Journal of infectious diseases (15.09.2013)
Published in The Journal of infectious diseases (15.09.2013)
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Journal Article
The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing: e1003776
Mann, Jaclyn K, Barton, John P, Ferguson, Andrew L, Omarjee, Saleha, Walker, Bruce D, Chakraborty, Arup
Published in PLoS computational biology (01.08.2014)
Published in PLoS computational biology (01.08.2014)
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Journal Article
Compartmentalization of innate immune responses in the central nervous system during cryptococcal meningitis/HIV coinfection
Naranbhai, Vivek, Chang, Christina C, Durgiah, Raveshni, Omarjee, Saleha, Lim, Andrew, Moosa, Mahomed-Yunus S, Elliot, Julian H, Ndung'u, Thumbi, Lewin, Sharon R, French, Martyn A, Carr, William H
Published in AIDS (London) (13.03.2014)
Published in AIDS (London) (13.03.2014)
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Journal Article
Nef-mediated down-regulation of CD4 and HLA class I in HIV-1 subtype C infection: Association with disease progression and influence of immune pressure
Mann, Jaclyn K, Chopera, Denis, Omarjee, Saleha, Kuang, Xiaomei T, Le, Anh Q, Anmole, Gursev, Danroth, Ryan, Mwimanzi, Philip, Reddy, Tarylee, Carlson, Jonathan, Radebe, Mopo, Goulder, Philip J.R, Walker, Bruce D, Abdool Karim, Salim, Novitsky, Vladimir, Williamson, Carolyn, Brockman, Mark A, Brumme, Zabrina L, Ndung’u, Thumbi
Published in Virology (New York, N.Y.) (01.11.2014)
Published in Virology (New York, N.Y.) (01.11.2014)
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Journal Article
Compartmentalisation of innate immune responses in the central nervous system during cryptococcal meningitis/HIV co-infection
NARANBHAI, Vivek, CHANG, Christina C., DURGIAH, Raveshni, OMARJEE, Saleha, LIM, Andrew, MOOSA, Mahomed-Yunus S., ELLIOT, Julian H., NDUNG’U, Thumbi, LEWIN, Sharon R., FRENCH, Martyn A., CARR, William H.
Published in AIDS (London) (13.03.2014)
Published in AIDS (London) (13.03.2014)
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Journal Article
Compartmentalization of innate immune responses in the central nervous system during cryptococcal meningitis/HIV coinfection
NARANBHAI, Vivek, CHANG, Christina C, CARR, William H, DURGIAH, Raveshni, OMARJEE, Saleha, LIM, Andrew, MOOSA, Mahomed-Yunus S, ELLIOT, Julian H, NDUNG'U, Thumbi, LEWIN, Sharon R, FRENCH, Martyn A
Published in AIDS (London) (2014)
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Published in AIDS (London) (2014)
Journal Article
Relationship of Human Immunodeficiency Virus Viral Load in Cerebrospinal Fluid and Plasma in Patients Co-infected With Cryptococcal Meningitis
Chang, Christina C, Kangethe, Richard, Omarjee, Saleha, Hiramen, Keshni, Gosnell, Bernadett, Sojane, Katlego, Moosa, Mohamed-Yunus S, Lewin, Sharon R, French, Martyn A, Ndung'u, Thumbi
Published in Open forum infectious diseases (01.03.2017)
Published in Open forum infectious diseases (01.03.2017)
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Journal Article
No Evidence for Selection of HIV-1 with Enhanced Gag-Protease or Nef Function among Breakthrough Infections in the CAPRISA 004 Tenofovir Microbicide Trial: e71758
Chopera, Denis R, Mann, Jaclyn K, Mwimanzi, Philip, Omarjee, Saleha, Kuang, Xiaomei T, Ndabambi, Nonkululeko, Goodier, Sarah, Martin, Eric, Naranbhai, Vivek, Karim, Salim Abdool
Published in PloS one (01.08.2013)
Published in PloS one (01.08.2013)
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