Machine learning model for sequence-driven DNA G-quadruplex formation
Sahakyan, Aleksandr B, Chambers, Vicki S, Marsico, Giovanni, Santner, Tobias, Di Antonio, Marco, Balasubramanian, Shankar
Published in Scientific reports (06.11.2017)
Published in Scientific reports (06.11.2017)
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Structural analysis reveals the formation and role of RNA G-quadruplex structures in human mature microRNAs
Chan, Ka Lung, Peng, Boya, Umar, Mubarak I, Chan, Chun-Yin, Sahakyan, Aleksandr B, Le, Minh T N, Kwok, Chun Kit
Published in Chemical communications (Cambridge, England) (2018)
Published in Chemical communications (Cambridge, England) (2018)
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Journal Article
Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning
Masuda, Kairi, Abdullah, Adib A, Pflughaupt, Patrick, Sahakyan, Aleksandr B
Published in Scientific data (22.08.2024)
Published in Scientific data (22.08.2024)
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Journal Article
Cyclophilin A catalyzes proline isomerization by an electrostatic handle mechanism
Camilloni, Carlo, Sahakyan, Aleksandr B., Holliday, Michael J., Isern, Nancy G., Zhang, Fengli, Eisenmesser, Elan Z., Vendruscolo, Michele
Published in Proceedings of the National Academy of Sciences - PNAS (15.07.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (15.07.2014)
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Structure-based prediction of methyl chemical shifts in proteins
Sahakyan, Aleksandr B., Vranken, Wim F., Cavalli, Andrea, Vendruscolo, Michele
Published in Journal of biomolecular NMR (01.08.2011)
Published in Journal of biomolecular NMR (01.08.2011)
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Journal Article
Selective Chemical Labeling of Natural T Modifications in DNA
Hardisty, Robyn E, Kawasaki, Fumiko, Sahakyan, Aleksandr B, Balasubramanian, Shankar
Published in Journal of the American Chemical Society (29.07.2015)
Published in Journal of the American Chemical Society (29.07.2015)
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Journal Article
Thermal and pH Stabilities of i‐DNA: Confronting in vitro Experiments with Models and In‐Cell NMR Data
Cheng, Mingpan, Qiu, Dehui, Tamon, Liezel, Ištvánková, Eva, Víšková, Pavlína, Amrane, Samir, Guédin, Aurore, Chen, Jielin, Lacroix, Laurent, Ju, Huangxian, Trantírek, Lukáš, Sahakyan, Aleksandr B., Zhou, Jun, Mergny, Jean‐Louis
Published in Angewandte Chemie International Edition (26.04.2021)
Published in Angewandte Chemie International Edition (26.04.2021)
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ROptimus: a parallel general-purpose adaptive optimization engine
Johnson, Nicholas A G, Tamon, Liezel, Liu, Xin, Sahakyan, Aleksandr B
Published in Bioinformatics (Oxford, England) (04.05.2023)
Published in Bioinformatics (Oxford, England) (04.05.2023)
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Journal Article
A Conformational Ensemble Derived Using NMR Methyl Chemical Shifts Reveals a Mechanical Clamping Transition That Gates the Binding of the HU Protein to DNA
Kannan, Arvind, Camilloni, Carlo, Sahakyan, Aleksandr B, Cavalli, Andrea, Vendruscolo, Michele
Published in Journal of the American Chemical Society (12.02.2014)
Published in Journal of the American Chemical Society (12.02.2014)
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Journal Article
ALMOST: An all atom molecular simulation toolkit for protein structure determination
Fu, Biao, Sahakyan, Aleksandr B., Camilloni, Carlo, Tartaglia, Gian Gaetano, Paci, Emanuele, Caflisch, Amedeo, Vendruscolo, Michele, Cavalli, Andrea
Published in Journal of computational chemistry (30.05.2014)
Published in Journal of computational chemistry (30.05.2014)
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