Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing
Sadegh, Sepideh, Matschinske, Julian, Blumenthal, David B., Galindez, Gihanna, Kacprowski, Tim, List, Markus, Nasirigerdeh, Reza, Oubounyt, Mhaned, Pichlmair, Andreas, Rose, Tim Daniel, Salgado-Albarrán, Marisol, Späth, Julian, Stukalov, Alexey, Wenke, Nina K., Yuan, Kevin, Pauling, Josch K., Baumbach, Jan
Published in Nature communications (14.07.2020)
Published in Nature communications (14.07.2020)
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Journal Article
Network medicine for disease module identification and drug repurposing with the NeDRex platform
Sadegh, Sepideh, Skelton, James, Anastasi, Elisa, Bernett, Judith, Blumenthal, David B., Galindez, Gihanna, Salgado-Albarrán, Marisol, Lazareva, Olga, Flanagan, Keith, Cockell, Simon, Nogales, Cristian, Casas, Ana I., Schmidt, Harald H. H. W., Baumbach, Jan, Wipat, Anil, Kacprowski, Tim
Published in Nature communications (25.11.2021)
Published in Nature communications (25.11.2021)
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Journal Article
Network-based approaches for modeling disease regulation and progression
Galindez, Gihanna, Sadegh, Sepideh, Baumbach, Jan, Kacprowski, Tim, List, Markus
Published in Computational and structural biotechnology journal (01.01.2023)
Published in Computational and structural biotechnology journal (01.01.2023)
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Journal Article
Lacking mechanistic disease definitions and corresponding association data hamper progress in network medicine and beyond
Sadegh, Sepideh, Skelton, James, Anastasi, Elisa, Maier, Andreas, Adamowicz, Klaudia, Möller, Anna, Kriege, Nils M., Kronberg, Jaanika, Haller, Toomas, Kacprowski, Tim, Wipat, Anil, Baumbach, Jan, Blumenthal, David B.
Published in Nature communications (25.03.2023)
Published in Nature communications (25.03.2023)
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Journal Article
NOX5-induced uncoupling of endothelial NO synthase is a causal mechanism and theragnostic target of an age-related hypertension endotype
Elbatreek, Mahmoud H, Sadegh, Sepideh, Anastasi, Elisa, Guney, Emre, Nogales, Cristian, Kacprowski, Tim, Hassan, Ahmed A, Teubner, Andreas, Huang, Po-Hsun, Hsu, Chien-Yi, Schiffers, Paul M H, Janssen, Ger M, Kleikers, Pamela W M, Wipat, Anil, Baumbach, Jan, De Mey, Jo G R, Schmidt, Harald H H W
Published in PLoS biology (01.11.2020)
Published in PLoS biology (01.11.2020)
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Journal Article
Robust disease module mining via enumeration of diverse prize-collecting Steiner trees
Bernett, Judith, Krupke, Dominik, Sadegh, Sepideh, Baumbach, Jan, Fekete, Sándor P, Kacprowski, Tim, List, Markus, Blumenthal, David B
Published in Bioinformatics (04.03.2022)
Published in Bioinformatics (04.03.2022)
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Journal Article
Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies
Galindez, Gihanna, Matschinske, Julian, Rose, Tim Daniel, Sadegh, Sepideh, Salgado-Albarrán, Marisol, Späth, Julian, Baumbach, Jan, Pauling, Josch Konstantin
Published in Nature Computational Science (01.01.2021)
Published in Nature Computational Science (01.01.2021)
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Journal Article
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
Hufsky, Franziska, Lamkiewicz, Kevin, Almeida, Alexandre, Aouacheria, Abdel, Arighi, Cecilia, Bateman, Alex, Baumbach, Jan, Beerenwinkel, Niko, Brandt, Christian, Cacciabue, Marco, Chuguransky, Sara, Drechsel, Oliver, Finn, Robert D, Fritz, Adrian, Fuchs, Stephan, Hattab, Georges, Hauschild, Anne-Christin, Heider, Dominik, Hoffmann, Marie, Hölzer, Martin, Hoops, Stefan, Kaderali, Lars, Kalvari, Ioanna, von Kleist, Max, Kmiecinski, Renó, Kühnert, Denise, Lasso, Gorka, Libin, Pieter, List, Markus, Löchel, Hannah F, Martin, Maria J, Martin, Roman, Matschinske, Julian, McHardy, Alice C, Mendes, Pedro, Mistry, Jaina, Navratil, Vincent, Nawrocki, Eric P, O’Toole, Áine Niamh, Ontiveros-Palacios, Nancy, Petrov, Anton I, Rangel-Pineros, Guillermo, Redaschi, Nicole, Reimering, Susanne, Reinert, Knut, Reyes, Alejandro, Richardson, Lorna, Robertson, David L, Sadegh, Sepideh, Singer, Joshua B, Theys, Kristof, Upton, Chris, Welzel, Marius, Williams, Lowri, Marz, Manja
Published in Briefings in Bioinformatics (04.11.2020)
Published in Briefings in Bioinformatics (04.11.2020)
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Journal Article
Book Review
Individuating Possibly Repurposable Drugs and Drug Targets for COVID-19 Treatment Through Hypothesis-Driven Systems Medicine Using CoVex
Matschinske, Julian, Salgado-Albarrán, Marisol, Sadegh, Sepideh, Bongiovanni, Dario, Baumbach, Jan, Blumenthal, David B
Published in Assay and drug development technologies (01.12.2020)
Published in Assay and drug development technologies (01.12.2020)
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Journal Article
Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing
Maier, Andreas, Hartung, Michael, Abovsky, Mark, Adamowicz, Klaudia, Bader, Gary D, Baier, Sylvie, Blumenthal, David B, Chen, Jing, Elkjaer, Maria L, Garcia-Hernandez, Carlos, Helmy, Mohamed, Hoffmann, Markus, Jurisica, Igor, Kotlyar, Max, Lazareva, Olga, Levi, Hagai, List, Markus, Lobentanzer, Sebastian, Loscalzo, Joseph, Malod-Dognin, Noel, Manz, Quirin, Matschinske, Julian, Mee, Miles, Oubounyt, Mhaned, Pastrello, Chiara, Pico, Alexander R, Pillich, Rudolf T, Poschenrieder, Julian M, Pratt, Dexter, Pržulj, Nataša, Sadegh, Sepideh, Saez-Rodriguez, Julio, Sarkar, Suryadipto, Shaked, Gideon, Shamir, Ron, Trummer, Nico, Turhan, Ugur, Wang, Rui-Sheng, Zolotareva, Olga, Baumbach, Jan
Published in Nucleic acids research (23.05.2024)
Published in Nucleic acids research (23.05.2024)
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Journal Article
Network Medicine-Based Unbiased Disease Modules for Drug and Diagnostic Target Identification in ROSopathies
Nogales, Cristian, Grønning, Alexander G B, Sadegh, Sepideh, Baumbach, Jan, Schmidt, Harald H H W
Published in Handbook of experimental pharmacology (2021)
Published in Handbook of experimental pharmacology (2021)
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Journal Article
Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing
Maier, Andreas, Hartung, Michael, Abovsky, Mark, Adamowicz, Klaudia, Bader, Gary D, Baier, Sylvie, Blumenthal, David B, Chen, Jing, Elkjaer, Maria L, Garcia-Hernandez, Carlos, Helmy, Mohamed, Hoffmann, Markus, Jurisica, Igor, Kotlyar, Max, Lazareva, Olga, Levi, Hagai, List, Markus, Lobentanzer, Sebastian, Loscalzo, Joseph, Malod-Dognin, Noel, Manz, Quirin, Matschinske, Julian, Mee, Miles, Oubounyt, Mhaned, Pico, Alexander R, Pillich, Rudolf T, Poschenrieder, Julian M, Pratt, Dexter, Pržulj, Nataša, Sadegh, Sepideh, Saez-Rodriguez, Julio, Sarkar, Suryadipto, Shaked, Gideon, Shamir, Ron, Trummer, Nico, Turhan, Ugur, Wang, Ruisheng, Zolotareva, Olga, Baumbach, Jan
Published in ArXiv.org (04.07.2023)
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Published in ArXiv.org (04.07.2023)
Journal Article
Drugst.One -- A plug-and-play solution for online systems medicine and network-based drug repurposing
Maier, Andreas, Hartung, Michael, Abovsky, Mark, Adamowicz, Klaudia, Bader, Gary D, Baier, Sylvie, Blumenthal, David B, Chen, Jing, Elkjaer, Maria L, Garcia-Hernandez, Carlos, Helmy, Mohamed, Hoffmann, Markus, Jurisica, Igor, Kotlyar, Max, Lazareva, Olga, Levi, Hagai, List, Markus, Lobentanzer, Sebastian, Loscalzo, Joseph, Malod-Dognin, Noel, Manz, Quirin, Matschinske, Julian, Mee, Miles, Oubounyt, Mhaned, Pico, Alexander R, Pillich, Rudolf T, Poschenrieder, Julian M, Pratt, Dexter, Pržulj, Nataša, Sadegh, Sepideh, Saez-Rodriguez, Julio, Sarkar, Suryadipto, Shaked, Gideon, Shamir, Ron, Trummer, Nico, Turhan, Ugur, Wang, Ruisheng, Zolotareva, Olga, Baumbach, Jan
Year of Publication 24.05.2023
Year of Publication 24.05.2023
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Journal Article
Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing
Sadegh, Sepideh, Matschinske, Julian, Blumenthal, David B, Galindez, Gihanna, Kacprowski, Tim, List, Markus, Nasirigerdeh, Reza, Oubounyt, Mhaned, Pichlmair, Andreas, Rose, Tim Daniel, Salgado-Albarrán, Marisol, Späth, Julian, Stukalov, Alexey, Wenke, Nina K, Yuan, Kevin, Pauling, Josch K, Baumbach, Jan
Published in arXiv.org (26.04.2020)
Published in arXiv.org (26.04.2020)
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Paper
Journal Article
Drugst.One -- A plug-and-play solution for online systems medicine and network-based drug repurposing
Maier, Andreas, Hartung, Michael, Abovsky, Mark, Adamowicz, Klaudia, Bader, Gary D, Baier, Sylvie, Blumenthal, David B, Chen, Jing, Elkjaer, Maria L, Garcia-Hernandez, Carlos, Helmy, Mohamed, Hoffmann, Markus, Jurisica, Igor, Kotlyar, Max, Lazareva, Olga, Levi, Hagai, List, Markus, Lobentanzer, Sebastian, Loscalzo, Joseph, Noel Malod-Dognin, Manz, Quirin, Matschinske, Julian, Mee, Miles, Oubounyt, Mhaned, Pico, Alexander R, Pillich, Rudolf T, Poschenrieder, Julian M, Pratt, Dexter, Pržulj, Nataša, Sadegh, Sepideh, Saez-Rodriguez, Julio, Sarkar, Suryadipto, Shaked, Gideon, Shamir, Ron, Trummer, Nico, Turhan, Ugur, Wang, Ruisheng, Zolotareva, Olga, Baumbach, Jan
Published in arXiv.org (04.07.2023)
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Published in arXiv.org (04.07.2023)
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