Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
Hager, Gordon L, Stamatoyannopoulos, John A, John, Sam, Sabo, Peter J, Thurman, Robert E, Sung, Myong-Hee, Biddie, Simon C, Johnson, Thomas A
Published in Nature genetics (01.03.2011)
Published in Nature genetics (01.03.2011)
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Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
Maurano, Matthew T., Humbert, Richard, Rynes, Eric, Thurman, Robert E., Haugen, Eric, Wang, Hao, Reynolds, Alex P., Sandstrom, Richard, Qu, Hongzhu, Brody, Jennifer, Shafer, Anthony, Neri, Fidencio, Lee, Kristen, Kutyavin, Tanya, Stehling-Sun, Sandra, Johnson, Audra K., Canfield, Theresa K., Giste, Erika, Diegel, Morgan, Bates, Daniel, Hansen, R. Scott, Neph, Shane, Sabo, Peter J., Heimfeld, Shelly, Raubitschek, Antony, Ziegler, Steven, Cotsapas, Chris, Sotoodehnia, Nona, Glass, Ian, Sunyaev, Shamil R., Kaul, Rajinder, Stamatoyannopoulos, John A.
Published in Science (American Association for the Advancement of Science) (07.09.2012)
Published in Science (American Association for the Advancement of Science) (07.09.2012)
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Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana
Sullivan, Alessandra M., Arsovski, Andrej A., Lempe, Janne, Bubb, Kerry L., Weirauch, Matthew T., Sabo, Peter J., Sandstrom, Richard, Thurman, Robert E., Neph, Shane, Reynolds, Alex P., Stergachis, Andrew B., Vernot, Benjamin, Johnson, Audra K., Haugen, Eric, Sullivan, Shawn T., Thompson, Agnieszka, Neri, Fidencio V., Weaver, Molly, Diegel, Morgan, Mnaimneh, Sanie, Yang, Ally, Hughes, Timothy R., Nemhauser, Jennifer L., Queitsch, Christine, Stamatoyannopoulos, John A.
Published in Cell reports (Cambridge) (25.09.2014)
Published in Cell reports (Cambridge) (25.09.2014)
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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
Stamatoyannopoulos, John A, Hesselberth, Jay R, Chen, Xiaoyu, Zhang, Zhihong, Sabo, Peter J, Sandstrom, Richard, Reynolds, Alex P, Thurman, Robert E, Neph, Shane, Kuehn, Michael S, Noble, William S, Fields, Stanley
Published in Nature methods (01.04.2009)
Published in Nature methods (01.04.2009)
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Conservation of trans-acting circuitry during mammalian regulatory evolution
Stergachis, Andrew B, Neph, Shane, Sandstrom, Richard, Haugen, Eric, Reynolds, Alex P, Zhang, Miaohua, Byron, Rachel, Canfield, Theresa, Stelhing-Sun, Sandra, Lee, Kristen, Thurman, Robert E, Vong, Shinny, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Giste, Erika, Dunn, Douglas, Vierstra, Jeff, Hansen, R Scott, Johnson, Audra K, Sabo, Peter J, Wilken, Matthew S, Reh, Thomas A, Treuting, Piper M, Kaul, Rajinder, Groudine, Mark, Bender, M A, Borenstein, Elhanan, Stamatoyannopoulos, John A
Published in Nature (London) (20.11.2014)
Published in Nature (London) (20.11.2014)
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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
Karpen, Gary H, Park, Peter J, Kharchenko, Peter V, Alekseyenko, Artyom A, Schwartz, Yuri B, Minoda, Aki, Riddle, Nicole C, Ernst, Jason, Sabo, Peter J, Larschan, Erica, Gorchakov, Andrey A, Gu, Tingting, Linder-Basso, Daniela, Plachetka, Annette, Shanower, Gregory, Tolstorukov, Michael Y, Luquette, Lovelace J, Xi, Ruibin, Jung, Youngsook L, Park, Richard W, Bishop, Eric P, Canfield, Theresa P, Sandstrom, Richard, Thurman, Robert E, MacAlpine, David M, Stamatoyannopoulos, John A, Kellis, Manolis, Elgin, Sarah C. R, Kuroda, Mitzi I, Pirrotta, Vincenzo
Published in Nature (London) (24.03.2011)
Published in Nature (London) (24.03.2011)
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Journal Article
Probing DNA shape and methylation state on a genomic scale with DNase I
Lazarovici, Allan, Zhou, Tianyin, Shafer, Anthony, Machado, Ana Carolina Dantas, Riley, Todd R., Sandstrom, Richard, Sabo, Peter J., Lu, Yan, Rohs, Remo, Stamatoyannopoulos, John A., Bussemaker, Harmen J.
Published in Proceedings of the National Academy of Sciences - PNAS (16.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (16.04.2013)
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The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
Li, Xiao-Yong, Thomas, Sean, Sabo, Peter J, Eisen, Michael B, Stamatoyannopoulos, John A, Biggin, Mark D
Published in Genome biology (01.01.2011)
Published in Genome biology (01.01.2011)
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Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development
Kaplan, Tommy, Li, Xiao-Yong, Sabo, Peter J, Thomas, Sean, Stamatoyannopoulos, John A, Biggin, Mark D, Eisen, Michael B
Published in PLoS genetics (01.02.2011)
Published in PLoS genetics (01.02.2011)
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Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements
Hakim, Ofir, Sung, Myong-Hee, Voss, Ty C, Splinter, Erik, John, Sam, Sabo, Peter J, Thurman, Robert E, Stamatoyannopoulos, John A, de Laat, Wouter, Hager, Gordon L
Published in Genome research (01.05.2011)
Published in Genome research (01.05.2011)
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Zebrafish globin switching occurs in two developmental stages and is controlled by the LCR
Ganis, Jared J., Hsia, Nelson, Trompouki, Eirini, de Jong, Jill L.O., DiBiase, Anthony, Lambert, Janelle S., Jia, Zhiying, Sabo, Peter J., Weaver, Molly, Sandstrom, Richard, Stamatoyannopoulos, John A., Zhou, Yi, Zon, Leonard I.
Published in Developmental biology (15.06.2012)
Published in Developmental biology (15.06.2012)
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Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
Stamatoyannopoulos, John A, Sabo, Peter J, Kuehn, Michael S, Thurman, Robert, Johnson, Brett E, Johnson, Ericka M, Cao, Hua, Yu, Man, Rosenzweig, Elizabeth, Goldy, Jeff, Haydock, Andrew, Weaver, Molly, Shafer, Anthony, Lee, Kristin, Neri, Fidencio, Humbert, Richard, Singer, Michael A, Richmond, Todd A, Dorschner, Michael O, McArthur, Michael, Hawrylycz, Michael, Green, Roland D, Navas, Patrick A, Noble, William S
Published in Nature methods (01.07.2006)
Published in Nature methods (01.07.2006)
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Mapping and Dynamics of Regulatory DNA in Maturing Arabidopsis thaliana Siliques
Sullivan, Alessandra M., Arsovski, Andrej A., Thompson, Agnieszka, Sandstrom, Richard, Thurman, Robert E., Neph, Shane, Johnson, Audra K., Sullivan, Shawn T., Sabo, Peter J., Neri, Fidencio V., Weaver, Molly, Diegel, Morgan, Nemhauser, Jennifer L., Stamatoyannopoulos, John A., Bubb, Kerry L., Queitsch, Christine
Published in Frontiers in plant science (14.11.2019)
Published in Frontiers in plant science (14.11.2019)
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Genome-scale mapping of DNase I hypersensitivity
John, Sam, Sabo, Peter J, Canfield, Theresa K, Lee, Kristen, Vong, Shinny, Weaver, Molly, Wang, Hao, Vierstra, Jeff, Reynolds, Alex P, Thurman, Robert E, Stamatoyannopoulos, John A
Published in Current protocols in molecular biology (Print) (01.07.2013)
Published in Current protocols in molecular biology (Print) (01.07.2013)
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Journal Article
Discovery of Functional Noncoding Elements by Digital Analysis of Chromatin Structure
Sabo, Peter J., Hawrylycz, Michael, Wallace, James C., Humbert, Richard, Yu, Man, Shafer, Anthony, Kawamoto, Janelle, Hall, Robert, Mack, Joshua, Dorschner, Michael O., McArthur, Michael, Stamatoyannopoulos, John A., Gartler, Stanley M.
Published in Proceedings of the National Academy of Sciences - PNAS (30.11.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (30.11.2004)
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An Erythroid Enhancer of BCL11A Subject to Genetic Variation Determines Fetal Hemoglobin Level
Bauer, Daniel E., Kamran, Sophia C., Lessard, Samuel, Xu, Jian, Fujiwara, Yuko, Lin, Carrie, Shao, Zhen, Canver, Matthew C., Smith, Elenoe C., Pinello, Luca, Sabo, Peter J., Vierstra, Jeff, Voit, Richard A., Yuan, Guo-Cheng, Porteus, Matthew H., Stamatoyannopoulos, John A., Lettre, Guillaume, Orkin, Stuart H.
Published in Science (American Association for the Advancement of Science) (11.10.2013)
Published in Science (American Association for the Advancement of Science) (11.10.2013)
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Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Lieberman-Aiden, Erez, van Berkum, Nynke L, Williams, Louise, Imakaev, Maxim, Ragoczy, Tobias, Telling, Agnes, Amit, Ido, Lajoie, Bryan R, Sabo, Peter J, Dorschner, Michael O, Sandstrom, Richard, Bernstein, Bradley, Bender, M.A, Groudine, Mark, Gnirke, Andreas, Stamatoyannopoulos, John, Mirny, Leonid A, Lander, Eric S, Dekker, Job
Published in Science (American Association for the Advancement of Science) (09.10.2009)
Published in Science (American Association for the Advancement of Science) (09.10.2009)
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Journal Article
Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Vierstra, Jeff, Rynes, Eric, Sandstrom, Richard, Zhang, Miaohua, Canfield, Theresa, Hansen, R. Scott, Stehling-Sun, Sandra, Sabo, Peter J., Byron, Rachel, Humbert, Richard, Thurman, Robert E., Johnson, Audra K., Vong, Shinny, Lee, Kristen, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Giste, Erika, Haugen, Eric, Dunn, Douglas, Wilken, Matthew S., Josefowicz, Steven, Samstein, Robert, Chang, Kai-Hsin, Eichler, Evan E., De Bruijn, Marella, Reh, Thomas A., Skoultchi, Arthur, Rudensky, Alexander, Orkin, Stuart H., Papayannopoulou, Thalia, Treuting, Piper M., Selleri, Licia, Kaul, Rajinder, Groudine, Mark, Bender, M. A., Stamatoyannopoulos, John A.
Published in Science (American Association for the Advancement of Science) (21.11.2014)
Published in Science (American Association for the Advancement of Science) (21.11.2014)
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Journal Article
Interaction of the Glucocorticoid Receptor with the Chromatin Landscape
John, Sam, Sabo, Peter J., Johnson, Thomas A., Sung, Myong-Hee, Biddie, Simon C., Lightman, Stafford L., Voss, Ty C., Davis, Sean R., Meltzer, Paul S., Stamatoyannopoulos, John A., Hager, Gordon L.
Published in Molecular cell (14.03.2008)
Published in Molecular cell (14.03.2008)
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