TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
Colaprico, Antonio, Silva, Tiago C, Olsen, Catharina, Garofano, Luciano, Cava, Claudia, Garolini, Davide, Sabedot, Thais S, Malta, Tathiane M, Pagnotta, Stefano M, Castiglioni, Isabella, Ceccarelli, Michele, Bontempi, Gianluca, Noushmehr, Houtan
Published in Nucleic acids research (05.05.2016)
Published in Nucleic acids research (05.05.2016)
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Journal Article
Glioma progression is shaped by genetic evolution and microenvironment interactions
Varn, Frederick S., Johnson, Kevin C., Martinek, Jan, Huse, Jason T., Wesseling, Pieter, Cooper, Lee A.D., Malta, Tathiane M., Wade, Taylor E., Brat, Daniel, Aldape, Kenneth, Ismail, Azzam, Kim, Hoon, White, Kieron, Pollock, Steven, Goldfarb, Christine, Lee, Ga-Hyun, Anderson, Kevin J., Nehar-Belaid, Djamel, Bakas, Spyridon, Byrne, Annette T., D’Angelo, Fulvio, Gan, Hui K., Khasraw, Mustafa, Migliozzi, Simona, Paek, Sun Ha, Walenkamp, Annemiek M.E., Weiss, Tobias, Poisson, Laila M., Noushmehr, Houtan, Iavarone, Antonio, Verhaak, Roel G.W., Varn, Frederick S., Huse, Jason T., Nasrallah, MacLean P., Wesseling, Pieter, Cooper, Lee A.D., Malta, Tathiane M., Sabedot, Thais S., Brat, Daniel, Gould, Peter V., Aldape, Kenneth, Sivajothi, Santhosh K., Barthel, Floris P., Kocakavuk, Emre, Ahmed, Nazia, White, Kieron, Moon, Hyo-Eun, Pollock, Steven, Lee, Ga-Hyun, Garofano, Luciano, Anderson, Kevin J., Nehar-Belaid, Djamel, Barnholtz-Sloan, Jill S., Bakas, Spyridon, Byrne, Annette T., Gan, Hui K., Khasraw, Mustafa, Ryan Ormond, D., Ha Paek, Sun, Van Meir, Erwin G., Walenkamp, Annemiek M.E., Watts, Colin, Weiss, Tobias, Weller, Michael, Amin, Samirkumar B., Brodbelt, Andrew, Bulsara, Ketan R., Castro, Ana Valeria, Connelly, Jennifer M., Costello, Joseph F., Finocchiaro, Gaetano, French, Pim J., Hau, Ann C., Hong, Chibo, Horbinski, Craig, Kannan, Kasthuri S., Kouwenhoven, Mathilde CM, LaViolette, Peter S., Ligon, Keith L., Lowman, Allison K., Miletic, Hrvoje, Niers, Johanna M., Phillips, Joanna J., Rabadan, Raul, Rao, Ganesh, Reifenberger, Guido, Sanai, Nader, Short, Susan C., Suzuki, Hiromichi, Tabatabai, Ghazaleh, Tomaszewski, William H., Wells, Michael, Wheeler, Helen, Xie, Jichun, Alfred Yung, W.K., Zadeh, Gelareh, Poisson, Laila M., Noushmehr, Houtan, Iavarone, Antonio, Verhaak, Roel GW
Published in Cell (09.06.2022)
Published in Cell (09.06.2022)
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Journal Article
Glioma CpG island methylator phenotype (G-CIMP): biological and clinical implications
Malta, Tathiane M, de Souza, Camila F, Sabedot, Thais S, Silva, Tiago C, Mosella, Maritza S, Kalkanis, Steven N, Snyder, James, Castro, Ana Valeria B, Noushmehr, Houtan
Published in Neuro-oncology (Charlottesville, Va.) (09.04.2018)
Published in Neuro-oncology (Charlottesville, Va.) (09.04.2018)
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Journal Article
A Distinct DNA Methylation Shift in a Subset of Glioma CpG Island Methylator Phenotypes during Tumor Recurrence
de Souza, Camila Ferreira, Sabedot, Thais S., Malta, Tathiane M., Stetson, Lindsay, Morozova, Olena, Sokolov, Artem, Laird, Peter W., Wiznerowicz, Maciej, Iavarone, Antonio, Snyder, James, deCarvalho, Ana, Sanborn, Zachary, McDonald, Kerrie L., Friedman, William A., Tirapelli, Daniela, Poisson, Laila, Mikkelsen, Tom, Carlotti, Carlos G., Kalkanis, Steven, Zenklusen, Jean, Salama, Sofie R., Barnholtz-Sloan, Jill S., Noushmehr, Houtan
Published in Cell reports (Cambridge) (10.04.2018)
Published in Cell reports (Cambridge) (10.04.2018)
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Journal Article
SIRT1 regulates Mxd1 during malignant melanoma progression
Meliso, Fabiana M, Micali, Danilo, Silva, Camila T, Sabedot, Thaís S, Coetzee, Simon G, Koch, Adrian, Fahlbusch, Fabian B, Noushmehr, Houtan, Schneider-Stock, Regine, Jasiulionis, Miriam G
Published in Oncotarget (29.12.2017)
Published in Oncotarget (29.12.2017)
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Journal Article
RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes
Mall, Raghvendra, Cerulo, Luigi, Garofano, Luciano, Frattini, Veronique, Kunji, Khalid, Bensmail, Halima, Sabedot, Thais S, Noushmehr, Houtan, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele
Published in Nucleic acids research (20.04.2018)
Published in Nucleic acids research (20.04.2018)
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Journal Article
A serum-based DNA methylation assay provides accurate detection of glioma
Sabedot, Thais S, Malta, Tathiane M, Snyder, James, Nelson, Kevin, Wells, Michael, deCarvalho, Ana C, Mukherjee, Abir, Chitale, Dhananjay A, Mosella, Maritza S, Sokolov, Artem, Asmaro, Karam P, Robin, Adam, Rosenblum, Mark L, Mikkelsen, Tom, Rock, Jack, Poisson, Laila M, Lee, Ian, Walbert, Tobias, Kalkanis, Steven, Iavarone, Antonio, Castro, Ana Valeria, Noushmehr, Houtan
Published in Neuro-oncology (Charlottesville, Va.) (01.09.2021)
Published in Neuro-oncology (Charlottesville, Va.) (01.09.2021)
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Journal Article
The Epigenetic Evolution of Glioma Is Determined by the IDH1 Mutation Status and Treatment Regimen
Malta, Tathiane M, Sabedot, Thais S, Morosini, Natalia S, Datta, Indrani, Garofano, Luciano, Vallentgoed, Wies, Varn, Frederick S, Aldape, Kenneth, D'Angelo, Fulvio, Bakas, Spyridon, Barnholtz-Sloan, Jill S, Gan, Hui K, Hasanain, Mohammad, Hau, Ann-Christin, Johnson, Kevin C, Cazacu, Simona, deCarvalho, Ana C, Khasraw, Mustafa, Kocakavuk, Emre, Kouwenhoven, Mathilde C M, Migliozzi, Simona, Niclou, Simone P, Niers, Johanna M, Ormond, D Ryan, Paek, Sun Ha, Reifenberger, Guido, Sillevis Smitt, Peter A, Smits, Marion, Stead, Lucy F, van den Bent, Martin J, Van Meir, Erwin G, Walenkamp, Annemiek, Weiss, Tobias, Weller, Michael, Westerman, Bart A, Ylstra, Bauke, Wesseling, Pieter, Lasorella, Anna, French, Pim J, Poisson, Laila M, Verhaak, Roel G W, Iavarone, Antonio, Noushmehr, Houtan
Published in Cancer research (Chicago, Ill.) (04.03.2024)
Published in Cancer research (Chicago, Ill.) (04.03.2024)
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Journal Article
Detection of tumor-specific DNA methylation markers in the blood of patients with pituitary neuroendocrine tumors
Herrgott, Grayson A, Asmaro, Karam P, Wells, Michael, Sabedot, Thais S, Malta, Tathiane M, Mosella, Maritza S, Nelson, Kevin, Scarpace, Lisa, Barnholtz-Sloan, Jill S, Sloan, Andrew E, Selman, Warren R, deCarvalho, Ana C, Poisson, Laila M, Mukherjee, Abir, Robin, Adam M, Lee, Ian Y, Snyder, James, Walbert, Tobias, Rosenblum, Mark, Mikkelsen, Tom, Bhan, Arti, Craig, John, Kalkanis, Steven, Rock, Jack, Noushmehr, Houtan, Castro, Ana Valeria
Published in Neuro-oncology (Charlottesville, Va.) (01.07.2022)
Published in Neuro-oncology (Charlottesville, Va.) (01.07.2022)
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Journal Article
DNA methylation-based signatures classify sporadic pituitary tumors according to clinicopathological features
Mosella, Maritza S, Sabedot, Thais S, Silva, Tiago C, Malta, Tathiane M, Dezem, Felipe Segato, Asmaro, Karam P, Wells, Michael, Mukherjee, Abir, Poisson, Laila M, Snyder, James, deCarvalho, Ana C, Walbert, Tobias, Aho, Todd, Kalkanis, Steven, Elias, Paula C, Antonini, Sonir R, Rock, Jack, Noushmehr, Houtan, Castro, Margaret, Castro, Ana Valeria
Published in Neuro-oncology (Charlottesville, Va.) (02.08.2021)
Published in Neuro-oncology (Charlottesville, Va.) (02.08.2021)
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Journal Article
A global metagenomic map of urban microbiomes and antimicrobial resistance
Danko, David, Neches, Russell Y., Nikolayeva, Olga, Chatziefthimiou, Aspassia D., Crawford, Robert W., Elhaik, Eran, Jang, Soojin, Kelly, Frank J., Kyrpides, Nikos C., Nagarajan, Niranjan, Semmler, Torsten, Suzuki, Haruo, Ugalde, Juan A., Vayndorf, Elena M., Adel, Ait-hamlat, Araujo, Luiza F., Bello, Carla, Bernardes, Juliana, Bitard-Feildel, Tristan, Bolzli, Kevin, Carbone, Alessandra, Castro, Sofia, Cedillo, Jonathan, Chavan, Akash Keluth, Chen, Xiaoqing, Cheung, Daisy, Chiu, Shirley, Dequeker, Chloé, Devi, Monika, Dezem, Felipe S., Dotsenko, Valeriia, Du, Steven, Faiz, Iqra, Fleiss, Aubin, Flores, Denisse, Forero, Juan Carlos, Francis, Aaishah, García, Catalina, Giang, Dao Phuong, Greselle, Charlotte, Haehr, Wolfgang, Hess-Homeier, David, Humphries, Elizabeth, Islam, Sharah, de Souza Gomes Kehdy, Fernanda, Khavari, Mahshid, Kim, Hyung Jun, KoLoMonaco, Giuseppe, Kobko-Litskevitch, Nadezhda, Kozhar, Michael, Kubota, Nanami, Kuklin, Andrii, Lafontaine, Ingrid, de Lamotte, Gerardo, Livia, Mayra Arauco, Loubens, Manon, Manoir, Dimitri, Meydan, Cem, Mignotte, Mathilde, Moitra, Karobi, Molinet, Jennifer, Molomjamts, Orgil-Erdene, Moreno, Mario, Munia, Muntaha, Nakagawa, Mayuko, Nazario, Bryan, Noushmehr, Houtan, O’Hara, Niamh B., Ordioni, Nils, Osuolale, Israel O., Osuolale, Oluwatosin M., Pineda, Lisbeth, Pompa-Hogan, Brianna, Portilla, María Gabriela, Qing, Tao, Ratnanandan, Prashanthi, Read, Timothy D., Robertiello, Alessandro, Rodríguez, Paula, Rosario, Anyelic, Roth, Sandra, Saito, Yoshitaka, Sato, Seisuke, Sato, Ryo, Sayara, Nowshin, Shaaban, Heba, Shari, Aliyah, Silva, Jordana M., Souza, Camila, Sprinsky, Nicolas, Suganuma, Kiyoshi, Sullivan, Jill, Takahashi, Kou, Thomas, Andrew M., Togashi, Takumi, Vacant, Sophie, Vann, Laura E., Wang, Cindy, Wong, Yan Ling, Yeh, George C.
Published in Cell (24.06.2021)
Published in Cell (24.06.2021)
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Journal Article
Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
Herrgott, Grayson A., Snyder, James M., She, Ruicong, Malta, Tathiane M., Sabedot, Thais S., Lee, Ian Y., Pawloski, Jacob, Podolsky-Gondim, Guilherme G., Asmaro, Karam P., Zhang, Jiaqi, Cannella, Cara E., Nelson, Kevin, Thomas, Bartow, deCarvalho, Ana C., Hasselbach, Laura A., Tundo, Kelly M., Newaz, Rehnuma, Transou, Andrea, Morosini, Natalia, Francisco, Victor, Poisson, Laila M., Chitale, Dhananjay, Mukherjee, Abir, Mosella, Maritza S., Robin, Adam M., Walbert, Tobias, Rosenblum, Mark, Mikkelsen, Tom, Kalkanis, Steven, Tirapelli, Daniela P. C., Weisenberger, Daniel J., Carlotti, Carlos G., Rock, Jack, Castro, Ana Valeria, Noushmehr, Houtan
Published in Nature communications (13.09.2023)
Published in Nature communications (13.09.2023)
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Journal Article
Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma
Ceccarelli, Michele, Salama, Sofie R., Manyam, Ganiraju, Zoppoli, Pietro, Grifford, Mia, Rao, Arvind, Lau, Ching C., Huse, Jason, Zheng, Siyuan, Hess, Kenneth, Rao, Ganesh, Beroukhim, Rameen, Akbani, Rehan, Wrensch, Margaret, Haussler, David, Aldape, Kenneth D., Anjum, Samreen, Balu, Saianand, Barnett, Gene, Black, Keith L., Bristow, Christopher A., Chen, Qing-Rong, Cho, Juok, Chuah, Eric, Chudamani, Sudha, Cohen, Mark L., Couce, Marta, Davidsen, Tanja, Davis, Amy, Elder, J. Bradley, Eschbacher, Jennifer M., Fehrenbach, Ashley, Ferguson, Martin, Fuller, Gregory, Fulop, Jordonna, Garofano, Luciano, Gastier-Foster, Julie M., Gehlenborg, Nils, Gerken, Mark, Gibson, William J., Hadjipanayis, Angela, Hayes, D. Neil, Hilty, Joe, Hoyle, Alan P., Jones, Corbin D., Jones, Steven J.M., Ju, Zhenlin, Kastl, Alison, Kendler, Ady, Kucherlapati, Raju, Lichtenberg, Tara M., Lin, Pei, Ljubimova, Julia Y., Lu, Yiling, Ma, Yussanne, Maglinte, Dennis T., Marra, Marco A., Meng, Shaowu, Miller, C. Ryan, Mills, Gordon B., Mose, Lisle E., Naska, Theresa, Noble, Michael S., Noss, Ardene, Palmer, Cheryl, Parfenov, Michael, Parker, Joel S., Perou, Charles M., Pihl, Todd, Protopopov, Alexei, Ramirez, Nilsa C., Saksena, Gordon, Schein, Jacqueline E., Shen, Hui, Shi, Yan, Shimmel, Kristen, Sicotte, Hugues, Sifri, Suzanne, Silva, Tiago, Singh, Rosy, Song, Xingzhi, Souza, Camila, Sun, Huandong, Sun, Charlie, Tang, Jiabin, Trevisan, Felipe Amstalden, Van Den Berg, David J., Voet, Doug, Wang, Zhining, Weinstein, John N., Weisenberger, Daniel J., Wilkerson, Matthew D., Williams, Felicia, Wise, Lisa, Xu, Andrew W., Yang, Lixing, Zack, Travis I., Zhang, Jianhua, Zhang, Wei, Zmuda, Erik
Published in Cell (28.01.2016)
Published in Cell (28.01.2016)
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Journal Article
Mineral processing of low quality zircon concentrates and preconcentrates
Sabedot, S., Wotruba, H., Sampaio, C. H., Petter, C. O., de Brum, I. A. S.
Published in Institution of Mining and Metallurgy. Transactions. Section C: Mineral processing and extractive metallurgy (01.06.2009)
Published in Institution of Mining and Metallurgy. Transactions. Section C: Mineral processing and extractive metallurgy (01.06.2009)
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Journal Article
JS04.5.A HEMIZYGOUSCDKN2A DELETION CONFERS WORSE SURVIVAL OUTCOMES IN IDH-MUTANT GLIOMAS
Kocakavuk, E, Johnson, K C, Sabedot, T S, Reinhardt, H C, Noushmehr, H, Verhaak, R G W
Published in Neuro-oncology (Charlottesville, Va.) (08.09.2023)
Published in Neuro-oncology (Charlottesville, Va.) (08.09.2023)
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Journal Article
JS04.5.A HEMIZYGOUS CDKN2A DELETION CONFERS WORSE SURVIVAL OUTCOMES IN IDH-MUTANT GLIOMAS
Kocakavuk, E, Johnson, K C, Sabedot, T S, Reinhardt, H C, Noushmehr, H, Verhaak, R G W
Published in Neuro-oncology (Charlottesville, Va.) (08.09.2023)
Published in Neuro-oncology (Charlottesville, Va.) (08.09.2023)
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Journal Article
Abstract A12: DNA methylation-based liquid biopsy detects primary and recurrent meningioma
Sabedot, Thais S., Malta, Tathiane M., Snyder, James, Walbert, Tobias, Lee, Ian, Kalkanis, Steven, Castro, Ana Valeria, Noushmehr, Houtan
Published in Clinical cancer research (01.06.2020)
Published in Clinical cancer research (01.06.2020)
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Journal Article
Abstract 907: Bioinformatic method to define epigenetically regulated enhancer elements associated with cancer
Sabedot, Thais S., Cassel, Seth H., Gao, Galen F., Lareau, Caleb A., Cherniack, Andrew, Lazar, Alexander, Kadoch, Cigall, Noushmehr, Houtan
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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