Machine Learning Models for the Identification of Prognostic and Predictive Cancer Biomarkers: A Systematic Review
Al-Tashi, Qasem, Saad, Maliazurina B, Muneer, Amgad, Qureshi, Rizwan, Mirjalili, Seyedali, Sheshadri, Ajay, Le, Xiuning, Vokes, Natalie I, Zhang, Jianjun, Wu, Jia
Published in International journal of molecular sciences (24.04.2023)
Published in International journal of molecular sciences (24.04.2023)
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Automated Cellular-Level Dual Global Fusion of Whole-Slide Imaging for Lung Adenocarcinoma Prognosis
Diao, Songhui, Chen, Pingjun, Showkatian, Eman, Bandyopadhyay, Rukhmini, Rojas, Frank R, Zhu, Bo, Hong, Lingzhi, Aminu, Muhammad, Saad, Maliazurina B, Salehjahromi, Morteza, Muneer, Amgad, Sujit, Sheeba J, Behrens, Carmen, Gibbons, Don L, Heymach, John V, Kalhor, Neda, Wistuba, Ignacio I, Solis Soto, Luisa M, Zhang, Jianjun, Qin, Wenjian, Wu, Jia
Published in Cancers (01.10.2023)
Published in Cancers (01.10.2023)
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SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers
Al-Tashi, Qasem, Saad, Maliazurina B., Sheshadri, Ajay, Wu, Carol C., Chang, Joe Y., Al-Lazikani, Bissan, Gibbons, Christopher, Vokes, Natalie I., Zhang, Jianjun, Lee, J. Jack, Heymach, John V., Jaffray, David, Mirjalili, Seyedali, Wu, Jia
Published in Patterns (New York, N.Y.) (11.08.2023)
Published in Patterns (New York, N.Y.) (11.08.2023)
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Synthetic PET from CT improves diagnosis and prognosis for lung cancer: Proof of concept
Salehjahromi, Morteza, Karpinets, Tatiana V., Sujit, Sheeba J., Qayati, Mohamed, Chen, Pingjun, Aminu, Muhammad, Saad, Maliazurina B., Bandyopadhyay, Rukhmini, Hong, Lingzhi, Sheshadri, Ajay, Lin, Julie, Antonoff, Mara B., Sepesi, Boris, Ostrin, Edwin J., Toumazis, Iakovos, Huang, Peng, Cheng, Chao, Cascone, Tina, Vokes, Natalie I., Behrens, Carmen, Siewerdsen, Jeffrey H., Hazle, John D., Chang, Joe Y., Zhang, Jianhua, Lu, Yang, Godoy, Myrna C.B., Chung, Caroline, Jaffray, David, Wistuba, Ignacio, Lee, J. Jack, Vaporciyan, Ara A., Gibbons, Don L., Gladish, Gregory, Heymach, John V., Wu, Carol C., Zhang, Jianjun, Wu, Jia
Published in Cell reports. Medicine (19.03.2024)
Published in Cell reports. Medicine (19.03.2024)
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Efficacy and clinicogenomic biomarkers of response to dual versus single agent checkpoint inhibitor therapy in untreated metastatic non-small cell lung cancer
Boiarsky, Daniel, Hong, Lingzhi, Ricciuti, Biagio, Cooper, Alissa Jamie, Saad, Maliazurina B, Elkrief, Arielle, Di Federico, Alessandro, Aminu, Muhammad, Rinsurongkawong, Waree, Lewis, Jeff, Gibbons, Don Lynn, Vaporciyan, Ara A., Le, Xiuning, Lee, J. Jack, Heymach, John, Wu, Jia, Schoenfeld, Adam Jacob, Awad, Mark M., Zhang, Jianjun, Vokes, Natalie I
Published in Journal of clinical oncology (01.06.2024)
Published in Journal of clinical oncology (01.06.2024)
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Journal Article
Efficacy and clinicogenomic correlates of response to immune checkpoint inhibitors alone or with chemotherapy in non-small cell lung cancer
Hong, Lingzhi, Aminu, Muhammad, Li, Shenduo, Lu, Xuetao, Petranovic, Milena, Saad, Maliazurina B., Chen, Pingjun, Qin, Kang, Varghese, Susan, Rinsurongkawong, Waree, Rinsurongkawong, Vadeerat, Spelman, Amy, Elamin, Yasir Y., Negrao, Marcelo V., Skoulidis, Ferdinandos, Gay, Carl M., Cascone, Tina, Gandhi, Saumil J., Lin, Steven H., Lee, Percy P., Carter, Brett W., Wu, Carol C., Antonoff, Mara B., Sepesi, Boris, Lewis, Jeff, Gibbons, Don L., Vaporciyan, Ara A., Le, Xiuning, Jack Lee, J., Roy-Chowdhuri, Sinchita, Routbort, Mark J., Gainor, Justin F., Heymach, John V., Lou, Yanyan, Wu, Jia, Zhang, Jianjun, Vokes, Natalie I.
Published in Nature communications (08.02.2023)
Published in Nature communications (08.02.2023)
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Deep learning signature from chest CT and association with immunotherapy outcomes in EGFR/ALK-negative NSCLC
Saad, Maliazurina B, Hong, Lingzhi, Aminu, Muhammad, Vokes, Natalie I, Chen, Pingjun, Wu, Carol C, Rinsurongkawong, Waree, Spelman, Amy R., Negrao, Marcelo Vailati, Cascone, Tina, Lin, Steven H., Lee, Percy, Sepesi, Boris, Gibbons, Don Lynn, Vaporciyan, Ara A., Lee, J. Jack, Le, Xiuning, Zhang, Jianjun, Wu, Jia, Heymach, John
Published in Journal of clinical oncology (01.06.2022)
Published in Journal of clinical oncology (01.06.2022)
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Journal Article
Real-world effectiveness of immune checkpoint inhibitors alone or in combination with chemotherapy in metastatic non–small cell lung cancer
Hong, Lingzhi, Rinsurongkawong, Waree, Saad, Maliazurina B, Chen, Pingjun, Aminu, Muhammad, Spelman, Amy R., Negrao, Marcelo Vailati, Cascone, Tina, Lin, Steven H., Lee, Percy, Sepesi, Boris, Lewis, Jeff, Gibbons, Don Lynn, Vaporciyan, Ara A., Lee, J. Jack, Le, Xiuning, Wu, Jia, Heymach, John, Zhang, Jianjun, Vokes, Natalie I
Published in Journal of clinical oncology (01.06.2022)
Published in Journal of clinical oncology (01.06.2022)
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Enhancing NSCLC recurrence prediction with PET/CT habitat imaging, ctDNA, and integrative radiogenomics-blood insights
Sujit, Sheeba J., Aminu, Muhammad, Karpinets, Tatiana V., Chen, Pingjun, Saad, Maliazurina B., Salehjahromi, Morteza, Boom, John D., Qayati, Mohamed, George, James M., Allen, Haley, Antonoff, Mara B., Hong, Lingzhi, Hu, Xin, Heeke, Simon, Tran, Hai T., Le, Xiuning, Elamin, Yasir Y., Altan, Mehmet, Vokes, Natalie I., Sheshadri, Ajay, Lin, Julie, Zhang, Jianhua, Lu, Yang, Behrens, Carmen, Godoy, Myrna C. B., Wu, Carol C., Chang, Joe Y., Chung, Caroline, Jaffray, David A., Wistuba, Ignacio I., Lee, J. Jack, Vaporciyan, Ara A., Gibbons, Don L., Heymach, John, Zhang, Jianjun, Cascone, Tina, Wu, Jia
Published in Nature communications (11.04.2024)
Published in Nature communications (11.04.2024)
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Journal Article
Predicting benefit from immune checkpoint inhibitors in patients with non-small-cell lung cancer by CT-based ensemble deep learning: a retrospective study
Saad, Maliazurina B, Hong, Lingzhi, Aminu, Muhammad, Vokes, Natalie I, Chen, Pingjun, Salehjahromi, Morteza, Qin, Kang, Sujit, Sheeba J, Lu, Xuetao, Young, Elliana, Al-Tashi, Qasem, Qureshi, Rizwan, Wu, Carol C, Carter, Brett W, Lin, Steven H, Lee, Percy P, Gandhi, Saumil, Chang, Joe Y, Li, Ruijiang, Gensheimer, Michael F, Wakelee, Heather A, Neal, Joel W, Lee, Hyun-Sung, Cheng, Chao, Velcheti, Vamsidhar, Lou, Yanyan, Petranovic, Milena, Rinsurongkawong, Waree, Le, Xiuning, Rinsurongkawong, Vadeerat, Spelman, Amy, Elamin, Yasir Y, Negrao, Marcelo V, Skoulidis, Ferdinandos, Gay, Carl M, Cascone, Tina, Antonoff, Mara B, Sepesi, Boris, Lewis, Jeff, Wistuba, Ignacio I, Hazle, John D, Chung, Caroline, Jaffray, David, Gibbons, Don L, Vaporciyan, Ara, Lee, J Jack, Heymach, John V, Zhang, Jianjun, Wu, Jia
Published in The Lancet. Digital health (01.07.2023)
Published in The Lancet. Digital health (01.07.2023)
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Abstract 964: Genomic and clinical predictors of early disease progression and chemoimmunotherapy benefit in advanced NSCLC
Hong, Lingzhi, Aminu, Muhammad, Lu, Xuetao, Saad, Maliazurina B., Chen, Pingjun, Rinsurongkawong, Waree, Spelman, Amy, Elamin, Yasir Y., Negrao, Marcelo V., Skoulidis, Ferdinandos, Gay, Carl M., Cascone, Tina, Antonoff, Mara B., Sepesi, Boris, Lewis, Jeff, Gibbons, Don L., Vaporciyan, Ara A., Le, Xiuning, Lee, J.Jack, Roy-Chowdhuri, Sinchita, Routbort, Mark J., Heymach, John V., Wu, Jia, Zhang, Jianjun, Vokes, Natalie I.
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Abstract 4393: Tumor volumetric analysis to correlate disease burden with response to dual immune checkpoint blockade in metastatic NSCLC
Aminu, Muhammad, Vokes, Natalie I., Saad, Maliazurina B., Li, Hui, Hong, Lingzhi, Mohamed, Mohamed S., Boom, John, Chen, Pingjun, Altan, Mehmet, Gandhi, Saumil, Swisher, Stephen, Antonoff, Mara B., Pozadzides, Jenny V., Jr, George Blumenschein, Gibbons, Don L., Cascone, Tina, Elamin, Yasir Y., Le, Xiuning, Negrao, Marcelo V., Skoulidis, Ferdinandos, Tsao, Anne S., Tu, Janet, Lee, J.Jack, Zhang, Jianjun, Heymach, John V., Wu, Jia
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Abstract 5443: Pathomics reveals the molecular and immune evolution from lung preneoplasia to invasive adenocarcinoma
Chen, Pingjun, Rojas, Frank, Hu, Xin, Fujimoto, Junya, Serrano, Alejandra, Zhu, Bo, Hong, Lingzhi, Bandyopadhyay, Rukhmini, Aminu, Muhammad, Saad, Maliazurina B., Salehjahromi, Morteza, Sujit, Sheeba J., Kalhor, Neda, Pass, Harvey I., Moreira, Andre L., Wistuba, Ignacio I., Gibbons, Don L., Heymach, John V., Soto, Luisa M. Solis, Zhang, Jianjun, Wu, Jia
Published in Cancer research (Chicago, Ill.) (04.04.2023)
Published in Cancer research (Chicago, Ill.) (04.04.2023)
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Journal Article
Cellular Architecture on Whole Slide Images Allows the Prediction of Survival in Lung Adenocarcinoma
Chen, Pingjun, Saad, Maliazurina B., Rojas, Frank R., Salehjahromi, Morteza, Aminu, Muhammad, Bandyopadhyay, Rukhmini, Hong, Lingzhi, Ebare, Kingsley, Behrens, Carmen, Gibbons, Don L., Kalhor, Neda, Heymach, John V., Wistuba, Ignacio I., Solis Soto, Luisa M., Zhang, Jianjun, Wu, Jia
Published in Computational Mathematics Modeling in Cancer Analysis (2022)
Published in Computational Mathematics Modeling in Cancer Analysis (2022)
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