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Published in International journal of molecular sciences (01.07.2007)
Published in International journal of molecular sciences (01.07.2007)
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MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes
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Published in Nucleic acids research (01.07.2014)
Published in Nucleic acids research (01.07.2014)
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MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)
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PDBsum: Structural summaries of PDB entries
Laskowski, Roman A., Jabłońska, Jagoda, Pravda, Lukáš, Vařeková, Radka Svobodová, Thornton, Janet M.
Published in Protein science (01.01.2018)
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Predicting pK a values from EEM atomic charges
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Published in Journal of cheminformatics (10.04.2013)
Published in Journal of cheminformatics (10.04.2013)
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MOLE 2.0: advanced approach for analysis of biomacromolecular channels
Sehnal, David, Svobodová Vařeková, Radka, Berka, Karel, Pravda, Lukáš, Navrátilová, Veronika, Banáš, Pavel, Ionescu, Crina-Maria, Otyepka, Michal, Koča, Jaroslav
Published in Journal of cheminformatics (16.08.2013)
Published in Journal of cheminformatics (16.08.2013)
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Predicting pKa values from EEM atomic charges
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Published in Journal of cheminformatics (10.04.2013)
Published in Journal of cheminformatics (10.04.2013)
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LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data
Sehnal, David, Deshpande, Mandar, Vařeková, Radka Svobodová, Mir, Saqib, Berka, Karel, Midlik, Adam, Pravda, Lukáš, Velankar, Sameer, Koča, Jaroslav
Published in Nature methods (01.12.2017)
Published in Nature methods (01.12.2017)
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PDBe: improved findability of macromolecular structure data in the PDB
Armstrong, David R, Berrisford, John M, Conroy, Matthew J, Gutmanas, Aleksandras, Anyango, Stephen, Choudhary, Preeti, Clark, Alice R, Dana, Jose M, Deshpande, Mandar, Dunlop, Roisin, Gane, Paul, Gáborová, Romana, Gupta, Deepti, Haslam, Pauline, Koča, Jaroslav, Mak, Lora, Mir, Saqib, Mukhopadhyay, Abhik, Nadzirin, Nurul, Nair, Sreenath, Paysan-Lafosse, Typhaine, Pravda, Lukas, Sehnal, David, Salih, Osman, Smart, Oliver, Tolchard, James, Varadi, Mihaly, Svobodova-Vařeková, Radka, Zaki, Hossam, Kleywegt, Gerard J, Velankar, Sameer
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Anatomy of enzyme channels
Pravda, Lukáš, Berka, Karel, Svobodová Vařeková, Radka, Sehnal, David, Banáš, Pavel, Laskowski, Roman A, Koča, Jaroslav, Otyepka, Michal
Published in BMC bioinformatics (18.11.2014)
Published in BMC bioinformatics (18.11.2014)
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Validation of ligands in macromolecular structures determined by X‐ray crystallography
Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer
Published in Acta crystallographica. Section D, Biological crystallography. (01.03.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.03.2018)
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The bio.tools registry of software tools and data resources for the life sciences
Ison, Jon, Ienasescu, Hans, Chmura, Piotr, Rydza, Emil, Ménager, Hervé, Kalaš, Matúš, Schwämmle, Veit, Grüning, Björn, Beard, Niall, Lopez, Rodrigo, Duvaud, Severine, Stockinger, Heinz, Persson, Bengt, Vařeková, Radka Svobodová, Raček, Tomáš, Vondrášek, Jiří, Peterson, Hedi, Salumets, Ahto, Jonassen, Inge, Hooft, Rob, Nyrönen, Tommi, Valencia, Alfonso, Capella, Salvador, Gelpí, Josep, Zambelli, Federico, Savakis, Babis, Leskošek, Brane, Rapacki, Kristoffer, Blanchet, Christophe, Jimenez, Rafael, Oliveira, Arlindo, Vriend, Gert, Collin, Olivier, van Helden, Jacques, Løngreen, Peter, Brunak, Søren
Published in Genome Biology (12.08.2019)
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ChannelsDB: database of biomacromolecular tunnels and pores
Pravda, Lukáš, Sehnal, David, Svobodová Vařeková, Radka, Navrátilová, Veronika, Toušek, Dominik, Berka, Karel, Otyepka, Michal, Koča, Jaroslav
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels
Berka, Karel, Hanák, Ondrej, Sehnal, David, Banás, Pavel, Navrátilová, Veronika, Jaiswal, Deepti, Ionescu, Crina-Maria, Svobodová Vareková, Radka, Koca, Jaroslav, Otyepka, Michal
Published in Nucleic acids research (01.07.2012)
Published in Nucleic acids research (01.07.2012)
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ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank
Sehnal, David, Svobodová Vařeková, Radka, Pravda, Lukáš, Ionescu, Crina-Maria, Geidl, Stanislav, Horský, Vladimír, Jaiswal, Deepti, Wimmerová, Michaela, Koča, Jaroslav
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules
Ionescu, Crina-Maria, Sehnal, David, Falginella, Francesco L., Pant, Purbaj, Pravda, Lukáš, Bouchal, Tomáš, Svobodová Vařeková, Radka, Geidl, Stanislav, Koča, Jaroslav
Published in Journal of cheminformatics (22.10.2015)
Published in Journal of cheminformatics (22.10.2015)
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Worldwide Protein Data Bank validation information: usage and trends
Smart, Oliver S., Horský, Vladimír, Gore, Swanand, Svobodová Vařeková, Radka, Bendová, Veronika, Kleywegt, Gerard J., Velankar, Sameer
Published in Acta crystallographica. Section D, Biological crystallography. (01.03.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.03.2018)
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