Maximizing the information content of experiments in systems biology
Liepe, Juliane, Filippi, Sarah, Komorowski, Michał, Stumpf, Michael P H
Published in PLoS computational biology (01.01.2013)
Published in PLoS computational biology (01.01.2013)
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Journal Article
Critical Truths About Power Laws
Stumpf, Michael P. H., Porter, Mason A.
Published in Science (American Association for the Advancement of Science) (10.02.2012)
Published in Science (American Association for the Advancement of Science) (10.02.2012)
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Journal Article
A large fraction of HLA class I ligands are proteasome-generated spliced peptides
Liepe, Juliane, Marino, Fabio, Sidney, John, Jeko, Anita, Bunting, Daniel E., Sette, Alessandro, Kloetzel, Peter M., Stumpf, Michael P. H., Heck, Albert J. R., Mishto, Michele
Published in Science (American Association for the Advancement of Science) (21.10.2016)
Published in Science (American Association for the Advancement of Science) (21.10.2016)
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Journal Article
Surveying membrane landscapes: a new look at the bacterial cell surface
Lithgow, Trevor, Stubenrauch, Christopher J., Stumpf, Michael P. H.
Published in Nature reviews. Microbiology (01.08.2023)
Published in Nature reviews. Microbiology (01.08.2023)
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Journal Article
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation
Liepe, Juliane, Kirk, Paul, Filippi, Sarah, Toni, Tina, Barnes, Chris P, Stumpf, Michael P H
Published in Nature protocols (01.02.2014)
Published in Nature protocols (01.02.2014)
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Journal Article
Estimating the size of the human interactome
Stumpf, Michael P.H, Thorne, Thomas, de Silva, Eric, Stewart, Ronald, An, Hyeong Jun, Lappe, Michael, Wiuf, Carsten
Published in Proceedings of the National Academy of Sciences - PNAS (13.05.2008)
Published in Proceedings of the National Academy of Sciences - PNAS (13.05.2008)
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Journal Article
Extrinsic Noise and Heavy-Tailed Laws in Gene Expression
Ham, Lucy, Brackston, Rowan D, Stumpf, Michael P H
Published in Physical review letters (13.03.2020)
Published in Physical review letters (13.03.2020)
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Journal Article
Transition state characteristics during cell differentiation
Brackston, Rowan D, Lakatos, Eszter, Stumpf, Michael P H
Published in PLoS computational biology (01.09.2018)
Published in PLoS computational biology (01.09.2018)
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Journal Article
Model selection in systems and synthetic biology
Kirk, Paul, Thorne, Thomas, Stumpf, Michael PH
Published in Current opinion in biotechnology (01.08.2013)
Published in Current opinion in biotechnology (01.08.2013)
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Journal Article
How to deal with parameters for whole-cell modelling
Babtie, Ann C., Stumpf, Michael P. H.
Published in Journal of the Royal Society interface (01.08.2017)
Published in Journal of the Royal Society interface (01.08.2017)
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Journal Article
Topological sensitivity analysis for systems biology
Babtie, Ann C., Kirk, Paul, Stumpf, Michael P. H.
Published in Proceedings of the National Academy of Sciences - PNAS (30.12.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (30.12.2014)
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Journal Article
Julia for biologists
Roesch, Elisabeth, Greener, Joe G., MacLean, Adam L., Nassar, Huda, Rackauckas, Christopher, Holy, Timothy E., Stumpf, Michael P. H.
Published in Nature methods (01.05.2023)
Published in Nature methods (01.05.2023)
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Journal Article
Systems Analysis of the Dynamic Inflammatory Response to Tissue Damage Reveals Spatiotemporal Properties of the Wound Attractant Gradient
Weavers, Helen, Liepe, Juliane, Sim, Aaron, Wood, Will, Martin, Paul, Stumpf, Michael P.H.
Published in Current biology (08.08.2016)
Published in Current biology (08.08.2016)
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Journal Article
Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology
Joly, Nicolas, Engl, Christoph, Jovanovic, Goran, Huvet, Maxime, Toni, Tina, Sheng, Xia, Stumpf, Michael P.H., Buck, Martin
Published in FEMS microbiology reviews (01.09.2010)
Published in FEMS microbiology reviews (01.09.2010)
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Journal Article
BondGraphs.jl: composable energy-based modelling in systems biology
Forrest, Joshua, Rajagopal, Vijay, Stumpf, Michael P H, Pan, Michael
Published in Bioinformatics (Oxford, England) (03.10.2023)
Published in Bioinformatics (Oxford, England) (03.10.2023)
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Journal Article
ABC-SysBio—approximate Bayesian computation in Python with GPU support
Liepe, Juliane, Barnes, Chris, Cule, Erika, Erguler, Kamil, Kirk, Paul, Toni, Tina, Stumpf, Michael P.H.
Published in Bioinformatics (15.07.2010)
Published in Bioinformatics (15.07.2010)
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Journal Article