A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal
Sun, James X, He, Yuting, Sanford, Eric, Montesion, Meagan, Frampton, Garrett M, Vignot, Stéphane, Soria, Jean-Charles, Ross, Jeffrey S, Miller, Vincent A, Stephens, Phil J, Lipson, Doron, Yelensky, Roman
Published in PLoS computational biology (07.02.2018)
Published in PLoS computational biology (07.02.2018)
Get full text
Journal Article
A Novel Next-Generation Sequencing Approach to Detecting Microsatellite Instability and Pan-Tumor Characterization of 1000 Microsatellite Instability–High Cases in 67,000 Patient Samples
Trabucco, Sally E., Gowen, Kyle, Maund, Sophia L., Sanford, Eric, Fabrizio, David A., Hall, Michael J., Yakirevich, Evgeny, Gregg, Jeffrey P., Stephens, Phil J., Frampton, Garrett M., Hegde, Priti S., Miller, Vincent A., Ross, Jeffrey S., Hartmaier, Ryan J., Huang, Shih-Min A., Sun, James X.
Published in The Journal of molecular diagnostics : JMD (01.11.2019)
Published in The Journal of molecular diagnostics : JMD (01.11.2019)
Get full text
Journal Article
RAS/MAPK Activation Is Associated with Reduced Tumor-Infiltrating Lymphocytes in Triple-Negative Breast Cancer: Therapeutic Cooperation Between MEK and PD-1/PD-L1 Immune Checkpoint Inhibitors
Loi, Sherene, Dushyanthen, Sathana, Beavis, Paul A, Salgado, Roberto, Denkert, Carsten, Savas, Peter, Combs, Susan, Rimm, David L, Giltnane, Jennifer M, Estrada, Monica V, Sánchez, Violeta, Sanders, Melinda E, Cook, Rebecca S, Pilkinton, Mark A, Mallal, Simon A, Wang, Kai, Miller, Vincent A, Stephens, Phil J, Yelensky, Roman, Doimi, Franco D, Gómez, Henry, Ryzhov, Sergey V, Darcy, Phillip K, Arteaga, Carlos L, Balko, Justin M
Published in Clinical cancer research (15.03.2016)
Published in Clinical cancer research (15.03.2016)
Get full text
Journal Article
Simple and Versatile 3D Printed Microfluidics Using Fused Filament Fabrication
Morgan, Alex J L, Hidalgo San Jose, Lorena, Jamieson, William D, Wymant, Jennifer M, Song, Bing, Stephens, Phil, Barrow, David A, Castell, Oliver K
Published in PloS one (06.04.2016)
Published in PloS one (06.04.2016)
Get full text
Journal Article
Genomic Profiling of Parathyroid Carcinoma Reveals Genomic Alterations Suggesting Benefit from Therapy
Kang, Hyunseok, Pettinga, Dean, Schubert, Adrian D., Ladenson, Paul W., Ball, Douglas W., Chung, Jon H., Schrock, Alexa B., Madison, Russell, Frampton, Garrett M., Stephens, Phil J., Ross, Jeffrey S., Miller, Vincent A., Ali, Siraj M.
Published in The oncologist (Dayton, Ohio) (01.06.2019)
Published in The oncologist (Dayton, Ohio) (01.06.2019)
Get full text
Journal Article
Identification of recurrent FGFR3-TACC3 fusion oncogenes from lung adenocarcinoma
Capelletti, Marzia, Dodge, Michael E, Ercan, Dalia, Hammerman, Peter S, Park, Seung-Il, Kim, Jhingook, Sasaki, Hidefumi, Jablons, David M, Lipson, Doron, Young, Lauren, Stephens, Phil J, Miller, Vincent A, Lindeman, Neal I, Munir, Kiara J, Richards, William G, Jänne, Pasi A
Published in Clinical cancer research (15.12.2014)
Published in Clinical cancer research (15.12.2014)
Get full text
Journal Article
Comprehensive Genomic Profiling Identifies a Subset of Crizotinib‐Responsive ALK‐Rearranged Non‐Small Cell Lung Cancer Not Detected by Fluorescence In Situ Hybridization
Ali, Siraj M., Hensing, Thomas, Schrock, Alexa B., Allen, Justin, Sanford, Eric, Gowen, Kyle, Kulkarni, Atul, He, Jie, Suh, James H., Lipson, Doron, Elvin, Julia A., Yelensky, Roman, Chalmers, Zachary, Chmielecki, Juliann, Peled, Nir, Klempner, Samuel J., Firozvi, Kashif, Frampton, Garrett M., Molina, Julian R., Menon, Smitha, Brahmer, Julie R., MacMahon, Heber, Nowak, Jan, Ou, Sai‐Hong Ignatius, Zauderer, Marjorie, Ladanyi, Marc, Zakowski, Maureen, Fischbach, Neil, Ross, Jeffrey S., Stephens, Phil J., Miller, Vincent A., Wakelee, Heather, Ganesan, Shridar, Salgia, Ravi
Published in The oncologist (Dayton, Ohio) (01.06.2016)
Published in The oncologist (Dayton, Ohio) (01.06.2016)
Get full text
Journal Article
The Pan‐Cancer Landscape of Coamplification of the Tyrosine Kinases KIT, KDR, and PDGFRA
Disel, Umut, Madison, Russell, Abhishek, Kumar, Chung, Jon H., Trabucco, Sally E., Matos, Asli O., Frampton, Garrett M., Albacker, Lee A., Reddy, Venkataprasanth, Karadurmus, Nuri, Benson, Adam, Webster, Jennifer, Paydas, Semra, Cabanillas, Ruben, Nangia, Chaitali, Ozturk, M.A., Millis, Sherri Z., Pal, Sumanta K., Wilky, Breelyn, Sokol, Ethan S., Gay, Laurie M., Soman, Salil, Ganesan, Shridar, Janeway, Katherine, Stephens, Phil J., Zhu, Viola W., Ou, Sai‐Hong Ignatius, Lovly, Christine M., Gounder, Mrinal, Schrock, Alexa B., Ross, Jeffrey S., Miller, Vincent A., Klempner, Samuel J., Ali, Siraj M.
Published in The oncologist (Dayton, Ohio) (01.01.2020)
Published in The oncologist (Dayton, Ohio) (01.01.2020)
Get full text
Journal Article
Ultrasonic Stimulation of Mouse Skin Reverses the Healing Delays in Diabetes and Aging by Activation of Rac1
Roper, James A., Williamson, Rosalind C., Bally, Blandine, Cowell, Christopher A.M., Brooks, Rebecca, Stephens, Phil, Harrison, Andrew J., Bass, Mark D.
Published in Journal of investigative dermatology (01.11.2015)
Published in Journal of investigative dermatology (01.11.2015)
Get full text
Journal Article
Tumor mutational burden and response to programmed cell death protein 1 inhibitors in a case series of patients with metastatic desmoplastic melanoma
Boussemart, Lise, Johnson, Adrienne, Schrock, Alexa B., Pal, Sumanta K., Frampton, Garrett M., Fabrizio, David, Chalmers, Zachary, Lotem, Michal, Gibney, Geoffrey, Russell, Jeffery, Chmielowski, Bartosz, Ross, Jeffrey S., Stephens, Phil J., Miller, Vincent A., Ali, Siraj M.
Published in Journal of the American Academy of Dermatology (01.06.2019)
Published in Journal of the American Academy of Dermatology (01.06.2019)
Get full text
Journal Article
Abstract LB-328: Subtypes of urothelial carcinoma of the urinary bladder defined by genomic alteration combinations predict clinical characteristics
Khan, Alyna, Fichtenholtz, Alex, Ross, Jeffrey, Frampton, Garrett, Neumann, Eric, Ali, Siraj M., Stephens, Phil J.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Get full text
Journal Article
Hybrid Capture‐Based Tumor Sequencing and Copy Number Analysis to Confirm Origin of Metachronous Metastases in BRCA1‐Mutant Cholangiocarcinoma Harboring a Novel YWHAZ‐BRAF Fusion
Lim, Huat C., Montesion, Meagan, Botton, Thomas, Collisson, Eric A., Umetsu, Sarah E., Behr, Spencer C., Gordan, John D., Stephens, Phil J., Kelley, Robin K.
Published in The oncologist (Dayton, Ohio) (01.09.2018)
Published in The oncologist (Dayton, Ohio) (01.09.2018)
Get full text
Journal Article
Development and Characterisation of a Human Chronic Skin Wound Cell Line-Towards an Alternative for Animal Experimentation
Caley, Matthew, Wall, Ivan B, Peake, Matthew, Kipling, David, Giles, Peter, Thomas, David W, Stephens, Phil
Published in International journal of molecular sciences (27.03.2018)
Published in International journal of molecular sciences (27.03.2018)
Get full text
Journal Article
Correction: RAS/MAPK Activation Is Associated with Reduced Tumor-Infiltrating Lymphocytes in Triple-Negative Breast Cancer: Therapeutic Cooperation Between MEK and PD-1/PD-L1 Immune Checkpoint Inhibitors
Loi, Sherene, Dushyanthen, Sathana, Beavis, Paul A, Salgado, Roberto, Denkert, Carsten, Savas, Peter, Combs, Susan, Rimm, David L, Giltnane, Jennifer M, Estrada, Monica V, Sánchez, Violeta, Sanders, Melinda E, Cook, Rebecca S, Pilkinton, Mark A, Mallal, Simon A, Wang, Kai, Miller, Vincent A, Stephens, Phil J, Yelensky, Roman, Doimi, Franco D, Gómez, Henry, Ryzhov, Sergey V, Darcy, Phillip K, Arteaga, Carlos L, Balko, Justin M
Published in Clinical cancer research (15.02.2019)
Published in Clinical cancer research (15.02.2019)
Get full text
Journal Article
Identification of a transcriptional signature for the wound healing continuum
Peake, Matthew A., Caley, Mathew, Giles, Peter J., Wall, Ivan, Enoch, Stuart, Davies, Lindsay C., Kipling, David, Thomas, David W., Stephens, Phil
Published in Wound repair and regeneration (01.05.2014)
Published in Wound repair and regeneration (01.05.2014)
Get full text
Journal Article
A prospective study of the microbiology of chronic venous leg ulcers to reevaluate the clinical predictive value of tissue biopsies and swabs
Davies, Charlotte E., Hill, Katja E., Newcombe, Robert G., Stephens, Phil, Wilson, Melanie J., Harding, Keith G., Thomas, David W.
Published in Wound repair and regeneration (01.01.2007)
Published in Wound repair and regeneration (01.01.2007)
Get full text
Journal Article
Abstract 3965: Rigorous validation of a clinical circulating tumor DNA assay for cancer molecular profiling
Clark, Travis A., Kennedy, Mark, He, Jie, Young, Geneva, Zhao, Mandy, Coyne, Mike, Breese, Virginia, Young, Lauren, Zhong, Shan, Bailey, Mark, Fendler, Bernard, Schleifman, Erica, Peters, Eric, Stephens, Phil J., Otto, Geoff A., Lipson, Doron
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Get full text
Journal Article
Oral Mucosal Lamina Propria‐Progenitor Cells Exert Antibacterial Properties via the Secretion of Osteoprotegerin and Haptoglobin
Board-Davies, Emma, Moses, Rachael, Sloan, Alastair, Stephens, Phil, Davies, Lindsay C.
Published in Stem cells translational medicine (01.11.2015)
Published in Stem cells translational medicine (01.11.2015)
Get full text
Journal Article