Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans
Cornejo, Omar E, Lefébure, Tristan, Bitar, Paulina D Pavinski, Lang, Ping, Richards, Vincent P, Eilertson, Kirsten, Do, Thuy, Beighton, David, Zeng, Lin, Ahn, Sang-Joon, Burne, Robert A, Siepel, Adam, Bustamante, Carlos D, Stanhope, Michael J
Published in Molecular biology and evolution (01.04.2013)
Published in Molecular biology and evolution (01.04.2013)
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Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of propanediol and iron and M-cell translocation
Dogan, Belgin, Suzuki, Haruo, Herlekar, Deepali, Sartor, R Balfour, Campbell, Barry J, Roberts, Carol L, Stewart, Katrina, Scherl, Ellen J, Araz, Yasemin, Bitar, Paulina P, Lefébure, Tristan, Chandler, Brendan, Schukken, Ynte H, Stanhope, Michael J, Simpson, Kenneth W
Published in Inflammatory bowel diseases (01.11.2014)
Published in Inflammatory bowel diseases (01.11.2014)
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Phenotypic heterogeneity of genomically-diverse isolates of Streptococcus mutans
Palmer, Sara R, Miller, James H, Abranches, Jacqueline, Zeng, Lin, Lefebure, Tristan, Richards, Vincent P, Lemos, José A, Stanhope, Michael J, Burne, Robert A
Published in PloS one (16.04.2013)
Published in PloS one (16.04.2013)
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Phylogenomics and the Dynamic Genome Evolution of the Genus Streptococcus
Richards, Vincent P., Palmer, Sara R., Pavinski Bitar, Paulina D., Qin, Xiang, Weinstock, George M., Highlander, Sarah K., Town, Christopher D., Burne, Robert A., Stanhope, Michael J.
Published in Genome biology and evolution (01.04.2014)
Published in Genome biology and evolution (01.04.2014)
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Gene regulation by CcpA and catabolite repression explored by RNA-Seq in Streptococcus mutans
Zeng, Lin, Choi, Sang Chul, Danko, Charles G, Siepel, Adam, Stanhope, Michael J, Burne, Robert A
Published in PloS one (28.03.2013)
Published in PloS one (28.03.2013)
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Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae
Lefébure, Tristan, Richards, Vince P, Lang, Ping, Pavinski-Bitar, Paulina, Stanhope, Michael J
Published in PloS one (30.05.2012)
Published in PloS one (30.05.2012)
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Journal Article
Core-Gene-Encoded Peptide Regulating Virulence-Associated Traits in Streptococcus mutans
Kim, Jeong Nam, Stanhope, Michael J, Burne, Robert A
Published in Journal of Bacteriology (01.06.2013)
Published in Journal of Bacteriology (01.06.2013)
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Recent Zoonotic Spillover and Tropism Shift of a Canine Coronavirus Is Associated with Relaxed Selection and Putative Loss of Function in NTD Subdomain of Spike Protein
Zehr, Jordan D, Pond, Sergei L Kosakovsky, Martin, Darren P, Ceres, Kristina, Whittaker, Gary R, Millet, Jean K, Goodman, Laura B, Stanhope, Michael J
Published in Viruses (21.04.2022)
Published in Viruses (21.04.2022)
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Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli
Richards, Vincent P, Lefébure, Tristan, Pavinski Bitar, Paulina D, Dogan, Belgin, Simpson, Kenneth W, Schukken, Ynte H, Stanhope, Michael J
Published in PloS one (25.03.2015)
Published in PloS one (25.03.2015)
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Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics
Murphy, William J., Eizirik, Eduardo, O'Brien, Stephen J., Madsen, Ole, Scally, Mark, Douady, Christophe J., Teeling, Emma, Ryder, Oliver A., Stanhope, Michael J., de Jong, Wilfried W., Springer, Mark S.
Published in Science (American Association for the Advancement of Science) (14.12.2001)
Published in Science (American Association for the Advancement of Science) (14.12.2001)
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Genomes of endangered great hammerhead and shortfin mako sharks reveal historic population declines and high levels of inbreeding in great hammerhead
Stanhope, Michael J., Ceres, Kristina M., Sun, Qi, Wang, Minghui, Zehr, Jordan D., Marra, Nicholas J., Wilder, Aryn P., Zou, Cheng, Bernard, Andrea M., Pavinski-Bitar, Paulina, Lokey, Mitchell G., Shivji, Mahmood S.
Published in iScience (20.01.2023)
Published in iScience (20.01.2023)
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Journal Article
Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis
Richards, Vincent P, Zadoks, Ruth N, Pavinski Bitar, Paulina D, Lefébure, Tristan, Lang, Ping, Werner, Brenda, Tikofsky, Linda, Moroni, Paolo, Stanhope, Michael J
Published in BMC microbiology (18.12.2012)
Published in BMC microbiology (18.12.2012)
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Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes
Huchon, Dorothée, Madsen, Ole, Sibbald, Mark J J B, Ament, Kai, Stanhope, Michael J, Catzeflis, François, de Jong, Wilfried W, Douzery, Emmanuel J P
Published in Molecular biology and evolution (01.07.2002)
Published in Molecular biology and evolution (01.07.2002)
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Comparative genomic analysis of the Streptococcus dysgalactiae species group: gene content, molecular adaptation, and promoter evolution
Suzuki, Haruo, Lefébure, Tristan, Hubisz, Melissa Jane, Pavinski Bitar, Paulina, Lang, Ping, Siepel, Adam, Stanhope, Michael J
Published in Genome biology and evolution (01.01.2011)
Published in Genome biology and evolution (01.01.2011)
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The Sahara as a Vicariant Agent, and the Role of Miocene Climatic Events, in the Diversification of the Mammalian Order Macroscelidea (Elephant Shrews)
Douady, Christophe J., Catzeflis, François, Raman, Jaishree, Springer, Mark S., Stanhope, Michael J.
Published in Proceedings of the National Academy of Sciences - PNAS (08.07.2003)
Published in Proceedings of the National Academy of Sciences - PNAS (08.07.2003)
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