Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
Donath, Alexander, Jühling, Frank, Al-Arab, Marwa, Bernhart, Stephan H, Reinhardt, Franziska, Stadler, Peter F, Middendorf, Martin, Bernt, Matthias
Published in Nucleic acids research (18.11.2019)
Published in Nucleic acids research (18.11.2019)
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Proteinortho: detection of (co-)orthologs in large-scale analysis
Lechner, Marcus, Findeiss, Sven, Steiner, Lydia, Marz, Manja, Stadler, Peter F, Prohaska, Sonja J
Published in BMC bioinformatics (28.04.2011)
Published in BMC bioinformatics (28.04.2011)
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Journal Article
Genetic aspects of mitochondrial genome evolution
Bernt, Matthias, Braband, Anke, Schierwater, Bernd, Stadler, Peter F.
Published in Molecular phylogenetics and evolution (01.11.2013)
Published in Molecular phylogenetics and evolution (01.11.2013)
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Journal Article
Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks
Holdt, Lesca M, Hoffmann, Steve, Sass, Kristina, Langenberger, David, Scholz, Markus, Krohn, Knut, Finstermeier, Knut, Stahringer, Anika, Wilfert, Wolfgang, Beutner, Frank, Gielen, Stephan, Schuler, Gerhard, Gäbel, Gabor, Bergert, Hendrik, Bechmann, Ingo, Stadler, Peter F, Thiery, Joachim, Teupser, Daniel
Published in PLoS genetics (01.07.2013)
Published in PLoS genetics (01.07.2013)
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Journal Article
ViennaRNA Package 2.0
Lorenz, Ronny, Bernhart, Stephan H, Höner Zu Siederdissen, Christian, Tafer, Hakim, Flamm, Christoph, Stadler, Peter F, Hofacker, Ivo L
Published in Algorithms for molecular biology (24.11.2011)
Published in Algorithms for molecular biology (24.11.2011)
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Journal Article
Design of Artificial Riboswitches as Biosensors
Findeiß, Sven, Etzel, Maja, Will, Sebastian, Mörl, Mario, Stadler, Peter F
Published in Sensors (Basel, Switzerland) (30.08.2017)
Published in Sensors (Basel, Switzerland) (30.08.2017)
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Journal Article
Lacking alignments? The next-generation sequencing mapper segemehl revisited
Otto, Christian, Stadler, Peter F, Hoffmann, Steve
Published in Bioinformatics (Oxford, England) (01.07.2014)
Published in Bioinformatics (Oxford, England) (01.07.2014)
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Journal Article
Optimisation via encodings: a renormalisation group perspective
Klemm, Konstantin, Mehta, Anita, Stadler, Peter F
Published in Journal of physics. A, Mathematical and theoretical (01.12.2023)
Published in Journal of physics. A, Mathematical and theoretical (01.12.2023)
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Journal Article
RNAalifold: improved consensus structure prediction for RNA alignments
Bernhart, Stephan H, Hofacker, Ivo L, Will, Sebastian, Gruber, Andreas R, Stadler, Peter F
Published in BMC bioinformatics (11.11.2008)
Published in BMC bioinformatics (11.11.2008)
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Journal Article
An updated human snoRNAome
Jorjani, Hadi, Kehr, Stephanie, Jedlinski, Dominik J, Gumienny, Rafal, Hertel, Jana, Stadler, Peter F, Zavolan, Mihaela, Gruber, Andreas R
Published in Nucleic acids research (20.06.2016)
Published in Nucleic acids research (20.06.2016)
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Journal Article
The primary transcriptome of the major human pathogen Helicobacter pylori
Vogel, Jörg, Sharma, Cynthia M, Hoffmann, Steve, Darfeuille, Fabien, Reignier, Jérémy, Findeiß, Sven, Sittka, Alexandra, Chabas, Sandrine, Reiche, Kristin, Hackermüller, Jörg, Reinhardt, Richard, Stadler, Peter F
Published in Nature (London) (11.03.2010)
Published in Nature (London) (11.03.2010)
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From modular decomposition trees to rooted median graphs
Bruckmann, Carmen, Stadler, Peter F., Hellmuth, Marc
Published in Discrete Applied Mathematics (31.03.2022)
Published in Discrete Applied Mathematics (31.03.2022)
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Journal Article
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Hoffmann, Steve, Otto, Christian, Kurtz, Stefan, Sharma, Cynthia M, Khaitovich, Philipp, Vogel, Jörg, Stadler, Peter F, Hackermüller, Jörg
Published in PLoS computational biology (01.09.2009)
Published in PLoS computational biology (01.09.2009)
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LocARNA-P: accurate boundary prediction and improved detection of structural RNAs
Will, Sebastian, Joshi, Tejal, Hofacker, Ivo L, Stadler, Peter F, Backofen, Rolf
Published in RNA (Cambridge) (01.05.2012)
Published in RNA (Cambridge) (01.05.2012)
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