Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis
Johnson, Jethro S, Spakowicz, Daniel J, Hong, Bo-Young, Petersen, Lauren M, Demkowicz, Patrick, Chen, Lei, Leopold, Shana R, Hanson, Blake M, Agresta, Hanako O, Gerstein, Mark, Sodergren, Erica, Weinstock, George M
Published in Nature communications (06.11.2019)
Published in Nature communications (06.11.2019)
Get full text
Journal Article
Obesity-associated microbiomes instigate visceral adipose tissue inflammation by recruitment of distinct neutrophils
Shantaram, Dharti, Hoyd, Rebecca, Blaszczak, Alecia M, Antwi, Linda, Jalilvand, Anahita, Wright, Valerie P, Liu, Joey, Smith, Alan J, Bradley, David, Lafuse, William, Liu, YunZhou, Williams, Nyelia F, Snyder, Owen, Wheeler, Caroline, Needleman, Bradley, Brethauer, Stacy, Noria, Sabrena, Renton, David, Perry, Kyle A, Nagareddy, Prabha, Wozniak, Daniel, Mahajan, Sahil, Rana, Pranav S J B, Pietrzak, Maciej, Schlesinger, Larry S, Spakowicz, Daniel J, Hsueh, Willa A
Published in Nature communications (27.06.2024)
Published in Nature communications (27.06.2024)
Get full text
Journal Article
Bayesian structural time series for biomedical sensor data: A flexible modeling framework for evaluating interventions
Liu, Jason, Spakowicz, Daniel J, Ash, Garrett I, Hoyd, Rebecca, Ahluwalia, Rohan, Zhang, Andrew, Lou, Shaoke, Lee, Donghoon, Zhang, Jing, Presley, Carolyn, Greene, Ann, Stults-Kolehmainen, Matthew, Nally, Laura M, Baker, Julien S, Fucito, Lisa M, Weinzimer, Stuart A, Papachristos, Andrew V, Gerstein, Mark
Published in PLoS computational biology (23.08.2021)
Published in PLoS computational biology (23.08.2021)
Get full text
Journal Article
Chemotoxicity and Associated Risk Factors in Colorectal Cancer: A Systematic Review and Meta-Analysis
Han, Claire J, Ning, Xia, Burd, Christin E, Spakowicz, Daniel J, Tounkara, Fode, Kalady, Matthew F, Noonan, Anne M, McCabe, Susan, Von Ah, Diane
Published in Cancers (01.07.2024)
Published in Cancers (01.07.2024)
Get full text
Journal Article
Metabolic Dysregulation Explains the Diverse Impacts of Obesity in Males and Females with Gastrointestinal Cancers
Rosario, Spencer R, Dong, Bowen, Zhang, Yali, Hsiao, Hua-Hsin, Isenhart, Emily, Wang, Jianmin, Siegel, Erin M, Monjazeb, Arta M, Owen, Dwight H, Dey, Prasenjit, Tabung, Fred K, Spakowicz, Daniel J, Murphy, William J, Edge, Stephen, Yendamuri, Sai, Ibrahimi, Sami, Kolesar, Jill M, McDonald, Patsy H, Vadehra, Deepak, Churchman, Michelle, Liu, Song, Kalinski, Pawel, Mukherjee, Sarbajit
Published in International journal of molecular sciences (29.06.2023)
Published in International journal of molecular sciences (29.06.2023)
Get full text
Journal Article
A Geriatric Assessment Intervention to Reduce Treatment Toxicity Among Older Adults With Advanced Lung Cancer: A Subgroup Analysis From a Cluster Randomized Controlled Trial
Presley, Carolyn J, Mohamed, Mostafa R, Culakova, Eva, Flannery, Marie, Vibhakar, Pooja H, Hoyd, Rebecca, Amini, Arya, VanderWalde, Noam, Wong, Melisa L, Tsubata, Yukari, Spakowicz, Daniel J, Mohile, Supriya G
Published in Frontiers in oncology (31.03.2022)
Published in Frontiers in oncology (31.03.2022)
Get full text
Journal Article
Volatile organic compound production by organisms in the genus Ascocoryne and a re-evaluation of myco-diesel production by NRRL 50072
GRIFFIN, Meghan A, SPAKOWICZ, Daniel J, GIANOULIS, Tara A, STROBEL, Scott A
Published in Microbiology (Society for General Microbiology) (01.12.2010)
Published in Microbiology (Society for General Microbiology) (01.12.2010)
Get full text
Journal Article
Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides
Gianoulis, Tara A, Griffin, Meghan A, Spakowicz, Daniel J, Dunican, Brian F, Alpha, Cambria J, Sboner, Andrea, Sismour, A Michael, Kodira, Chinnappa, Egholm, Michael, Church, George M, Gerstein, Mark B, Strobel, Scott A
Published in PLoS genetics (01.03.2012)
Published in PLoS genetics (01.03.2012)
Get full text
Journal Article
The FITNESS study: longitudinal geriatric assessment, treatment toxicity, and biospecimen collection to assess functional disability among older adults with lung cancer
Grogan, Madison, Hoyd, Rebecca, Benedict, Jason, Janse, Sarah, Williams, Nyelia, Naughton, Michelle, Burd, Christin E, Paskett, Electra D, Rosko, Ashley, Spakowicz, Daniel J, Presley, Carolyn J
Published in Frontiers in aging (07.06.2024)
Published in Frontiers in aging (07.06.2024)
Get full text
Journal Article
Exploratory studies of oral and fecal microbiome in healthy human aging
Zhou, Xin, Wang, Baohong, Demkowicz, Patrick C, Johnson, Jethro S, Chen, Yanfei, Spakowicz, Daniel J, Zhou, Yanjiao, Dorsett, Yair, Chen, Lei, Sodergren, Erica, Kuchel, George A, Weinstock, George M
Published in Frontiers in aging (20.10.2022)
Published in Frontiers in aging (20.10.2022)
Get full text
Journal Article
The real cost of sequencing: scaling computation to keep pace with data generation
Muir, Paul, Li, Shantao, Lou, Shaoke, Wang, Daifeng, Spakowicz, Daniel J, Salichos, Leonidas, Zhang, Jing, Weinstock, George M, Isaacs, Farren, Rozowsky, Joel, Gerstein, Mark
Published in Genome Biology (23.03.2016)
Published in Genome Biology (23.03.2016)
Get full text
Journal Article
Volatile Metabolomic Composition of Vitex Species: Chemodiversity Insights and Acaricidal Activity
de Sena Filho, José G, Barreto, Ighor C, Soares Filho, Avaldo O, Nogueira, Paulo C L, Teodoro, Adenir V, Cruz da Silva, Ana V, Xavier, Haroudo S, Rabbani, Allívia R C, Spakowicz, Daniel J, Duringer, Jennifer M
Published in Frontiers in plant science (14.11.2017)
Published in Frontiers in plant science (14.11.2017)
Get full text
Journal Article
Associations of frailty with symptoms, and HRQOL in older cancer survivors after cancer treatments: a systematic review and meta-analyses
Han, Claire J., Rosko, Ashley E., Spakowicz, Daniel J., Hammer, Marilyn J., Von Ah, Diane
Published in Quality of life research (01.03.2024)
Published in Quality of life research (01.03.2024)
Get full text
Journal Article
Biosynthesis of hydrocarbons and volatile organic compounds by fungi: bioengineering potential
Spakowicz, Daniel J, Strobel, Scott A
Published in Applied microbiology and biotechnology (01.06.2015)
Published in Applied microbiology and biotechnology (01.06.2015)
Get full text
Journal Article
Gut Microbiota Richness and Diversity Track with T Cell Aging in Healthy Adults
Madison, Annelise A, Burd, Christin E, Andridge, Rebecca, Wilson, Stephanie J, Bailey, Michael T, Belury, Martha, Spakowicz, Daniel J, Malarkey, William, Kiecolt-Glaser, Janice K
Published in The journals of gerontology. Series A, Biological sciences and medical sciences (01.03.2024)
Published in The journals of gerontology. Series A, Biological sciences and medical sciences (01.03.2024)
Get more information
Journal Article
Identification of a Fungal 1,8-Cineole Synthase from Hypoxylon sp. with Specificity Determinants in Common with the Plant Synthases
Shaw, Jeffrey J., Berbasova, Tetyana, Sasaki, Tomoaki, Jefferson-George, Kyra, Spakowicz, Daniel J., Dunican, Brian F., Portero, Carolina E., Narváez-Trujillo, Alexandra, Strobel, Scott A.
Published in The Journal of biological chemistry (27.03.2015)
Published in The Journal of biological chemistry (27.03.2015)
Get full text
Journal Article
Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease
Zhou, Xin, Shen, Xiaotao, Johnson, Jethro S., Spakowicz, Daniel J., Agnello, Melissa, Zhou, Wenyu, Avina, Monica, Honkala, Alexander, Chleilat, Faye, Chen, Shirley Jingyi, Cha, Kexin, Leopold, Shana, Zhu, Chenchen, Chen, Lei, Lyu, Lin, Hornburg, Daniel, Wu, Si, Zhang, Xinyue, Jiang, Chao, Jiang, Liuyiqi, Jiang, Lihua, Jian, Ruiqi, Brooks, Andrew W., Wang, Meng, Contrepois, Kévin, Gao, Peng, Rose, Sophia Miryam Schüssler-Fiorenza, Tran, Thi Dong Binh, Nguyen, Hoan, Celli, Alessandra, Hong, Bo-Young, Bautista, Eddy J., Dorsett, Yair, Kavathas, Paula B., Zhou, Yanjiao, Sodergren, Erica, Weinstock, George M., Snyder, Michael P.
Published in Cell host & microbe (10.04.2024)
Published in Cell host & microbe (10.04.2024)
Get full text
Journal Article
Improving combination therapies: targeting A2B-adenosine receptor to modulate metabolic tumor microenvironment and immunosuppression
Evans, Jason V, Suman, Shankar, Goruganthu, Mounika Uttam L, Tchekneva, Elena E, Guan, Shuxiao, Arasada, Rajeswara Rao, Antonucci, Anneliese, Piao, Longzhu, Ilgisonis, Irina, Bobko, Andrey A, Driesschaert, Benoit, Uzhachenko, Roman V, Hoyd, Rebecca, Samouilov, Alexandre, Amann, Joseph, Wu, Ruohan, Wei, Lai, Pallerla, Aaditya, Ryzhov, Sergey V, Feoktistov, Igor, Park, Kyungho P, Kikuchi, Takefumi, Castro, Julio, Ivanova, Alla V, Kanagasabai, Thanigaivelan, Owen, Dwight H, Spakowicz, Daniel J, Zweier, Jay L, Carbone, David P, Novitskiy, Sergey V, Khramtsov, Valery V, Shanker, Anil, Dikov, Mikhail M
Published in JNCI : Journal of the National Cancer Institute (08.11.2023)
Published in JNCI : Journal of the National Cancer Institute (08.11.2023)
Get full text
Journal Article
The impact of antibiotic and proton pump inhibitor use at the time of adjuvant platinum-based chemotherapy on survival in patients with endometrial cancer
Haight, Paulina J., Kistenfeger, Quinn, Riedinger, Courtney J., Khadraoui, Wafa, Backes, Floor J., Bixel, Kristin L., Copeland, Larry J., Cohn, David E., Cosgrove, Casey M., O'Malley, David M., Nagel, Christa I., Spakowicz, Daniel J., Chambers, Laura M.
Published in Gynecologic oncology (01.11.2023)
Published in Gynecologic oncology (01.11.2023)
Get full text
Journal Article