1255 Single cell dissection of human checkpoint inhibitor hepatitis reveals insights into liver immune tolerance
Thomas, Molly, Chan, Tos, Smith, Neal, Sonthalia, Shreyash, Sherman, Marc, Ramesh, Swetha, Tirard, Alice, McGuire, John, Nasrallah, Mazen, Manakongtreecheep, Kasidet, Tantivit, Jessica, Zubiri, Leyre, Juric, Dejan, Sullivan, Ryan, Hacohen, Nir, Boland, Genevieve M, Lauer, Georg, Reynolds, Kerry, Villani, Alexandra-Chloe
Published in Journal for immunotherapy of cancer (01.11.2023)
Published in Journal for immunotherapy of cancer (01.11.2023)
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Journal Article
Beta Cell Dedifferentiation Induced by IRE1α Deletion Prevents Type 1 Diabetes
Lee, Hugo, Lee, Yong-Syu, Harenda, Quincy, Pietrzak, Stefan, Oktay, Hülya Zeynep, Schreiber, Sierra, Liao, Yian, Sonthalia, Shreyash, Ciecko, Ashley E., Chen, Yi-Guang, Keles, Sunduz, Sridharan, Rupa, Engin, Feyza
Published in Cell metabolism (07.04.2020)
Published in Cell metabolism (07.04.2020)
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Journal Article
PREDICTION OF PHYSIOLOGICAL DETERIORATION AND MORTALITY IN MECHANICALLY VENTILATED PATIENTS ADMITTED TO THE ICU
DING, ANDY, SANCHEZ, MORGAN, CHEN, YUNRU, KUSMANOV, MADI, SONTHALIA, SHREYASH, BEDARD, TIMOTHY, GREENSTEIN, JOSEPH, WINSLOW, RAIMOND, MENDEZ-TELLEZ, PEDRO
Published in Chest (01.10.2021)
Published in Chest (01.10.2021)
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Journal Article
Stress-induced β cell early senescence confers protection against type 1 diabetes
Lee, Hugo, Sahin, Gulcan Semra, Chen, Chien-Wen, Sonthalia, Shreyash, Cañas, Sandra Marín, Oktay, Hulya Zeynep, Duckworth, Alexander T, Brawerman, Gabriel, Thompson, Peter J, Hatzoglou, Maria, Eizirik, Decio L, Engin, Feyza
Published in Cell metabolism (05.12.2023)
Published in Cell metabolism (05.12.2023)
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Journal Article
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain
Ament, Seth A, Adkins, Ricky S, Carter, Robert, Chrysostomou, Elena, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather H, Degatano, Kylee, Felix, Victor, Gandt, Peter, Garden, Gwenn A, Giglio, Michelle, Herb, Brian R, Khajouei, Farzaneh, Kiernan, Elizabeth, McCracken, Carrie, McDaniel, Kennedy, Nadendla, Suvarna, Nickel, Lance, Olley, Dustin, Orvis, Joshua, Receveur, Joseph P, Schor, Mike, Sonthalia, Shreyash, Tickle, Timothy L, Way, Jessica, Hertzano, Ronna, Mahurkar, Anup A, White, Owen R
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
DEVELOPMENT AND VALIDATION OF A CLINICAL DECISION-SUPPORT TOOL FOR PREDICTION OF WEANING OUTCOME ON ADMISSION TO THE ICU
AMANIAN, AMEEN, BOROUGHS, ZACHARY, KIFLE, NAOMI, N NGUYEN, MATTHEW, WEI, MEIHAN, ZHAO, XIHAN, SONTHALIA, SHREYASH, L GREENSTEIN, JOSEPH, TAYLOR, CASEY, M DESMAN, JACOB, Y WEI, TONY, A MENDEZ-TELLEZ, PEDRO
Published in Chest (01.10.2022)
Published in Chest (01.10.2022)
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Journal Article
CellCover Defines Conserved Cell Types and Temporal Progression in scRNA-seq Data across Mammalian Neocortical Development
Ji, Lanlan, Wang, An, Sonthalia, Shreyash, Naiman, Daniel Q, Younes, Laurent, Colantuoni, Carlo, Geman, Donald
Published in bioRxiv : the preprint server for biology (07.04.2023)
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Published in bioRxiv : the preprint server for biology (07.04.2023)
Journal Article
A Curated Compendium of Transcriptomic Data for the Exploration of Neocortical Development
Sonthalia, Shreyash, Adkins, Ricky S, Orvis, Joshua, Li, Guangyan, Mato Blanco, Xoel, Casella, Alex, Liu, Jinrui, Stein-O'Brien, Genevieve, Caffo, Brian, Hertzano, Ronna, Mahurkar, Anup, Gillis, Jesse, Werner, Jonathan, Ma, Shaojie, Micali, Nicola, Sestan, Nenad, Rakic, Pasko, Santpere, Gabriel, Ament, Seth A, Colantuoni, Carlo
Published in bioRxiv (07.08.2024)
Published in bioRxiv (07.08.2024)
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Journal Article
in silico transcriptome dissection of neocortical excitatory neurogenesis via joint matrix decomposition and transfer learning
Sonthalia, Shreyash, Li, Guangyan, Blanco, Xoel Mato, Casella, Alex, Liu, Jinrui, Stein-O'Brien, Genevieve, Caffo, Brian, Adkins, Ricky S, Orvis, Joshua, Hertzano, Ronna, Mahurkar, Anup, Gillis, Jesse, Werner, Jonathan, Ma, Shaojie, Micali, Nicola, Sestan, Nenad, Rakic, Pasko, Santpere, Gabriel, Ament, Seth A, Colantuoni, Carlo
Published in bioRxiv (28.02.2024)
Published in bioRxiv (28.02.2024)
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Paper
Structured Joint Decomposition (SJD) identifies conserved molecular dynamics across collections of biologically related multi-omics data matrices
Chen, Huan, Liu, Jinrui, Sonthalia, Shreyash, Stein-Obrien, Genevieve, Luo, Xiao, Caffo, Brian, Colantuoni, Carlo
Published in bioRxiv (08.11.2022)
Published in bioRxiv (08.11.2022)
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Insights for disease modeling from single cell transcriptomics of iPSC-derived neurons and astrocytes across differentiation time and co-culture
Das, Debamitra, Sonthalia, Shreyash, Stein-O'brien, Genevieve G, Wahbeh, Marah, Feuer, Kyra, Colantuoni, Carlo, Machairaki, Vasiliki, Avramopoulos, Dimitrios
Published in bioRxiv (16.06.2022)
Published in bioRxiv (16.06.2022)
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