Temporal development of the gut microbiome in early childhood from the TEDDY study
Stewart, Christopher J., Ajami, Nadim J., O’Brien, Jacqueline L., Hutchinson, Diane S., Smith, Daniel P., Wong, Matthew C., Ross, Matthew C., Lloyd, Richard E., Doddapaneni, HarshaVardhan, Metcalf, Ginger A., Muzny, Donna, Gibbs, Richard A., Vatanen, Tommi, Huttenhower, Curtis, Xavier, Ramnik J., Rewers, Marian, Hagopian, William, Toppari, Jorma, Ziegler, Anette-G., She, Jin-Xiong, Akolkar, Beena, Lernmark, Ake, Hyoty, Heikki, Vehik, Kendra, Krischer, Jeffrey P., Petrosino, Joseph F.
Published in Nature (London) (01.10.2018)
Published in Nature (London) (01.10.2018)
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Journal Article
The gut mycobiome of the Human Microbiome Project healthy cohort
Nash, Andrea K, Auchtung, Thomas A, Wong, Matthew C, Smith, Daniel P, Gesell, Jonathan R, Ross, Matthew C, Stewart, Christopher J, Metcalf, Ginger A, Muzny, Donna M, Gibbs, Richard A, Ajami, Nadim J, Petrosino, Joseph F
Published in Microbiome (25.11.2017)
Published in Microbiome (25.11.2017)
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Journal Article
Longitudinal analysis of microbial interaction between humans and the indoor environment
Lax, Simon, Smith, Daniel P., Hampton-Marcell, Jarrad, Owens, Sarah M., Handley, Kim M., Scott, Nicole M., Gibbons, Sean M., Larsen, Peter, Shogan, Benjamin D., Weiss, Sophie, Metcalf, Jessica L., Ursell, Luke K., Vázquez-Baeza, Yoshiki, Van Treuren, Will, Hasan, Nur A., Gibson, Molly K., Colwell, Rita, Dantas, Gautam, Knight, Rob, Gilbert, Jack A.
Published in Science (American Association for the Advancement of Science) (29.08.2014)
Published in Science (American Association for the Advancement of Science) (29.08.2014)
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Journal Article
Antibiotics in neonatal life increase murine susceptibility to experimental psoriasis
Zanvit, Peter, Konkel, Joanne E., Jiao, Xue, Kasagi, Shimpei, Zhang, Dunfang, Wu, Ruiqing, Chia, Cheryl, Ajami, Nadim J., Smith, Daniel P., Petrosino, Joseph F., Abbatiello, Brittany, Nakatsukasa, Hiroko, Chen, Qianming, Belkaid, Yasmine, Chen, Zi-Jiang, Chen, WanJun
Published in Nature communications (29.09.2015)
Published in Nature communications (29.09.2015)
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Journal Article
Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls
Stewart, Christopher J, Embleton, Nicholas D, Marrs, Emma C L, Smith, Daniel P, Fofanova, Tatiana, Nelson, Andrew, Skeath, Tom, Perry, John D, Petrosino, Joseph F, Berrington, Janet E, Cummings, Stephen P
Published in Microbiome (12.07.2017)
Published in Microbiome (12.07.2017)
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Journal Article
One carbon metabolism in SAR11 pelagic marine bacteria
Sun, Jing, Steindler, Laura, Thrash, J Cameron, Halsey, Kimberly H, Smith, Daniel P, Carter, Amy E, Landry, Zachary C, Giovannoni, Stephen J
Published in PloS one (23.08.2011)
Published in PloS one (23.08.2011)
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Journal Article
The role of the gastrointestinal microbiome in infectious complications during induction chemotherapy for acute myeloid leukemia
Galloway‐Peña, Jessica R., Smith, Daniel P., Sahasrabhojane, Pranoti, Ajami, Nadim J., Wadsworth, W. Duncan, Daver, Naval G., Chemaly, Roy F., Marsh, Lisa, Ghantoji, Shashank S., Pemmaraju, Naveen, Garcia‐Manero, Guillermo, Rezvani, Katayoun, Alousi, Amin M., Wargo, Jennifer A., Shpall, Elizabeth J., Futreal, Phillip A., Guindani, Michele, Petrosino, Joseph F., Kontoyiannis, Dimitrios P., Shelburne, Samuel A.
Published in Cancer (15.07.2016)
Published in Cancer (15.07.2016)
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Journal Article
Saliva from obese individuals suppresses the release of aroma compounds from wine
Piombino, Paola, Genovese, Alessandro, Esposito, Silvia, Moio, Luigi, Cutolo, Pier Paolo, Chambery, Angela, Severino, Valeria, Moneta, Elisabetta, Smith, Daniel P, Owens, Sarah M, Gilbert, Jack A, Ercolini, Danilo
Published in PloS one (22.01.2014)
Published in PloS one (22.01.2014)
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Journal Article
Fusobacterium Nucleatum Subspecies Animalis Influences Proinflammatory Cytokine Expression and Monocyte Activation in Human Colorectal Tumors
Ye, Xiangcang, Wang, Rui, Bhattacharya, Rajat, Boulbes, Delphine R, Fan, Fan, Xia, Ling, Adoni, Harish, Ajami, Nadim J, Wong, Matthew C, Smith, Daniel P, Petrosino, Joseph F, Venable, Susan, Qiao, Wei, Baladandayuthapani, Veera, Maru, Dipen, Ellis, Lee M
Published in Cancer prevention research (Philadelphia, Pa.) (01.07.2017)
Published in Cancer prevention research (Philadelphia, Pa.) (01.07.2017)
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Journal Article
Oral microbiota reveals signs of acculturation in Mexican American women
Hoffman, Kristi L, Hutchinson, Diane S, Fowler, Jerry, Smith, Daniel P, Ajami, Nadim J, Zhao, Hua, Scheet, Paul, Chow, Wong-Ho, Petrosino, Joseph F, Daniel, Carrie R
Published in PloS one (25.04.2018)
Published in PloS one (25.04.2018)
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Journal Article
Temporal changes in gastrointestinal fungi and the risk of autoimmunity during early childhood: the TEDDY study
Auchtung, Thomas A., Stewart, Christopher J., Smith, Daniel P., Triplett, Eric W., Agardh, Daniel, Hagopian, William A., Ziegler, Anette G., Rewers, Marian J., She, Jin-Xiong, Toppari, Jorma, Lernmark, Åke, Akolkar, Beena, Krischer, Jeffrey P., Vehik, Kendra, Auchtung, Jennifer M., Ajami, Nadim J., Petrosino, Joseph F.
Published in Nature communications (07.06.2022)
Published in Nature communications (07.06.2022)
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Journal Article
Effects of tobacco smoke and electronic cigarette vapor exposure on the oral and gut microbiota in humans: a pilot study
Stewart, Christopher J, Auchtung, Thomas A, Ajami, Nadim J, Velasquez, Kenia, Smith, Daniel P, De La Garza, 2nd, Richard, Salas, Ramiro, Petrosino, Joseph F
Published in PeerJ (San Francisco, CA) (30.04.2018)
Published in PeerJ (San Francisco, CA) (30.04.2018)
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Journal Article
Intestinal anastomotic injury alters spatially defined microbiome composition and function
Shogan, Benjamin D, Smith, Daniel P, Christley, Scott, Gilbert, Jack A, Zaborina, Olga, Alverdy, John C
Published in Microbiome (15.09.2014)
Published in Microbiome (15.09.2014)
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Journal Article
A fungal endophyte induces local cell wall-mediated resistance in wheat roots against take-all disease
Chancellor, Tania, Smith, Daniel P, Chen, Wanxin, Clark, Suzanne J, Venter, Eudri, Halsey, Kirstie, Carrera, Esther, McMillan, Vanessa, Canning, Gail, Armer, Victoria J, Hammond-Kosack, Kim E, Palma-Guerrero, Javier
Published in Frontiers in plant science (18.09.2024)
Published in Frontiers in plant science (18.09.2024)
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Journal Article
Beyond the genome: community-level analysis of the microbial world
Zarraonaindia, Iratxe, Smith, Daniel P., Gilbert, Jack A.
Published in Biology & philosophy (01.03.2013)
Published in Biology & philosophy (01.03.2013)
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Journal Article
Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients
Galloway-Peña, Jessica R, Smith, Daniel P, Sahasrabhojane, Pranoti, Wadsworth, W Duncan, Fellman, Bryan M, Ajami, Nadim J, Shpall, Elizabeth J, Daver, Naval, Guindani, Michele, Petrosino, Joseph F, Kontoyiannis, Dimitrios P, Shelburne, Samuel A
Published in Genome medicine (28.02.2017)
Published in Genome medicine (28.02.2017)
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Journal Article
Janus kinase inhibitors are potential therapeutics for amyotrophic lateral sclerosis
Richardson, Peter J, Smith, Daniel P, de Giorgio, Alex, Snetkov, Xenia, Almond-Thynne, Joshua, Cronin, Sara, Mead, Richard J, McDermott, Christopher J, Shaw, Pamela J
Published in Translational neurodegeneration (12.10.2023)
Published in Translational neurodegeneration (12.10.2023)
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