Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells
Zhu, Ying, Piehowski, Paul D., Zhao, Rui, Chen, Jing, Shen, Yufeng, Moore, Ronald J., Shukla, Anil K., Petyuk, Vladislav A., Campbell-Thompson, Martha, Mathews, Clayton E., Smith, Richard D., Qian, Wei-Jun, Kelly, Ryan T.
Published in Nature communications (28.02.2018)
Published in Nature communications (28.02.2018)
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Journal Article
Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC‐MS
Zhu, Ying, Clair, Geremy, Chrisler, William B., Shen, Yufeng, Zhao, Rui, Shukla, Anil K., Moore, Ronald J., Misra, Ravi S., Pryhuber, Gloria S., Smith, Richard D., Ansong, Charles, Kelly, Ryan T.
Published in Angewandte Chemie (International ed.) (17.09.2018)
Published in Angewandte Chemie (International ed.) (17.09.2018)
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Journal Article
Quantitative proteomics identifies altered O‐GlcNAcylation of structural, synaptic and memory‐associated proteins in Alzheimer's disease
Wang, Sheng, Yang, Feng, Petyuk, Vladislav A, Shukla, Anil K, Monroe, Matthew E, Gritsenko, Marina A, Rodland, Karin D, Smith, Richard D, Qian, Wei‐Jun, Gong, Cheng‐Xin, Liu, Tao
Published in The Journal of pathology (01.09.2017)
Published in The Journal of pathology (01.09.2017)
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Journal Article
High-resolution ultrahigh-pressure long column reversed-phase liquid chromatography for top-down proteomics
Shen, Yufeng, Tolić, Nikola, Piehowski, Paul D., Shukla, Anil K., Kim, Sangtae, Zhao, Rui, Qu, Yi, Robinson, Errol, Smith, Richard D., Paša-Tolić, Ljiljana
Published in Journal of Chromatography (19.05.2017)
Published in Journal of Chromatography (19.05.2017)
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Journal Article
Ancient Regulatory Role of Lysine Acetylation in Central Metabolism
Nakayasu, Ernesto S, Burnet, Meagan C, Walukiewicz, Hanna E, Wilkins, Christopher S, Shukla, Anil K, Brooks, Shelby, Plutz, Matthew J, Lee, Brady D, Schilling, Birgit, Wolfe, Alan J, Müller, Susanne, Kirby, John R, Rao, Christopher V, Cort, John R, Payne, Samuel H
Published in mBio (29.12.2017)
Published in mBio (29.12.2017)
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Journal Article
Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury
Gralinski, Lisa E, Bankhead, 3rd, Armand, Jeng, Sophia, Menachery, Vineet D, Proll, Sean, Belisle, Sarah E, Matzke, Melissa, Webb-Robertson, Bobbie-Jo M, Luna, Maria L, Shukla, Anil K, Ferris, Martin T, Bolles, Meagan, Chang, Jean, Aicher, Lauri, Waters, Katrina M, Smith, Richard D, Metz, Thomas O, Law, G Lynn, Katze, Michael G, McWeeney, Shannon, Baric, Ralph S
Published in mBio (06.08.2013)
Published in mBio (06.08.2013)
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Journal Article
Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses
Menachery, Vineet D, Eisfeld, Amie J, Schäfer, Alexandra, Josset, Laurence, Sims, Amy C, Proll, Sean, Fan, Shufang, Li, Chengjun, Neumann, Gabriele, Tilton, Susan C, Chang, Jean, Gralinski, Lisa E, Long, Casey, Green, Richard, Williams, Christopher M, Weiss, Jeffrey, Matzke, Melissa M, Webb-Robertson, Bobbie-Jo, Schepmoes, Athena A, Shukla, Anil K, Metz, Thomas O, Smith, Richard D, Waters, Katrina M, Katze, Michael G, Kawaoka, Yoshihiro, Baric, Ralph S
Published in mBio (20.05.2014)
Published in mBio (20.05.2014)
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Journal Article
Lipidomics reveals dramatic lipid compositional changes in the maturing postnatal lung
Dautel, Sydney E., Kyle, Jennifer E., Clair, Geremy, Sontag, Ryan L., Weitz, Karl K., Shukla, Anil K., Nguyen, Son N., Kim, Young-Mo, Zink, Erika M., Luders, Teresa, Frevert, Charles W., Gharib, Sina A., Laskin, Julia, Carson, James P., Metz, Thomas O., Corley, Richard A., Ansong, Charles
Published in Scientific reports (01.02.2017)
Published in Scientific reports (01.02.2017)
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Journal Article
MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses
Nakayasu, Ernesto S, Nicora, Carrie D, Sims, Amy C, Burnum-Johnson, Kristin E, Kim, Young-Mo, Kyle, Jennifer E, Matzke, Melissa M, Shukla, Anil K, Chu, Rosalie K, Schepmoes, Athena A, Jacobs, Jon M, Baric, Ralph S, Webb-Robertson, Bobbie-Jo, Smith, Richard D, Metz, Thomas O
Published in mSystems (01.05.2016)
Published in mSystems (01.05.2016)
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Journal Article
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments
Matzke, Melissa M., Brown, Joseph N., Gritsenko, Marina A., Metz, Thomas O., Pounds, Joel G., Rodland, Karin D., Shukla, Anil K., Smith, Richard D., Waters, Katrina M., McDermott, Jason E., Webb-Robertson, Bobbie-Jo
Published in Proteomics (Weinheim) (01.02.2013)
Published in Proteomics (Weinheim) (01.02.2013)
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Journal Article
Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry
Burnum-Johnson, Kristin E., Nie, Song, Casey, Cameron P., Monroe, Matthew E., Orton, Daniel J., Ibrahim, Yehia M., Gritsenko, Marina A., Clauss, Therese R.W., Shukla, Anil K., Moore, Ronald J., Purvine, Samuel O., Shi, Tujin, Qian, Weijun, Liu, Tao, Baker, Erin S., Smith, Richard D.
Published in Molecular & cellular proteomics (01.12.2016)
Published in Molecular & cellular proteomics (01.12.2016)
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Journal Article
A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses
Mitchell, Hugh D, Eisfeld, Amie J, Sims, Amy C, McDermott, Jason E, Matzke, Melissa M, Webb-Robertson, Bobbi-Jo M, Tilton, Susan C, Tchitchek, Nicolas, Josset, Laurence, Li, Chengjun, Ellis, Amy L, Chang, Jean H, Heegel, Robert A, Luna, Maria L, Schepmoes, Athena A, Shukla, Anil K, Metz, Thomas O, Neumann, Gabriele, Benecke, Arndt G, Smith, Richard D, Baric, Ralph S, Kawaoka, Yoshihiro, Katze, Michael G, Waters, Katrina M
Published in PloS one (25.07.2013)
Published in PloS one (25.07.2013)
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Journal Article
Role of CTGF in Sensitivity to Hyperthermia in Ovarian and Uterine Cancers
Hatakeyama, Hiroto, Wu, Sherry Y., Lyons, Yasmin A., Pradeep, Sunila, Wang, Wanqin, Huang, Qian, Court, Karem A., Liu, Tao, Nie, Song, Rodriguez-Aguayo, Cristian, Shen, Fangrong, Huang, Yan, Hisamatsu, Takeshi, Mitamura, Takashi, Jennings, Nicholas, Shim, Jeajun, Dorniak, Piotr L., Mangala, Lingegowda S., Petrillo, Marco, Petyuk, Vladislav A., Schepmoes, Athena A., Shukla, Anil K., Torres-Lugo, Madeline, Lee, Ju-Seog, Rodland, Karin D., Fagotti, Anna, Lopez-Berestein, Gabriel, Li, Chun, Sood, Anil K.
Published in Cell reports (Cambridge) (01.11.2016)
Published in Cell reports (Cambridge) (01.11.2016)
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Journal Article
Rare Earth Elements Alter Redox Balance in Methylomicrobium alcaliphilum 20ZR
Akberdin, Ilya R., Collins, David A., Hamilton, Richard, Oshchepkov, Dmitry Y., Shukla, Anil K., Nicora, Carrie D., Nakayasu, Ernesto S., Adkins, Joshua N., Kalyuzhnaya, Marina G.
Published in Frontiers in microbiology (27.11.2018)
Published in Frontiers in microbiology (27.11.2018)
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Journal Article
Proteome Analyses of Strains ATCC 51142 and PCC 7822 of the Diazotrophic Cyanobacterium Cyanothece sp. under Culture Conditions Resulting in Enhanced H2 Production
ARYAL, Uma K, CALLISTER, Stephen J, SMITH, Richard D, SHERMAN, Louis, MISHRA, Sujata, XIAOHUI ZHANG, SHUTTHANANDAN, Janani I, ANGEL, Thomas E, SHUKLA, Anil K, MONROE, Matthew E, MOORE, Ronald J, KOPPENAAL, David W
Published in Applied and Environmental Microbiology (01.02.2013)
Published in Applied and Environmental Microbiology (01.02.2013)
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Journal Article
Effect of Rhizobium, PSB and P-levels on Growth, Yield Attributes and Yield of Urdbean (Vigna mungo L.)
Kant, Surya, Kumar, Achin, Kumar, Satendra, Kumar, Vipin, Pal, Yogesh, Shukla, Anil
Published in Journal of pure & applied microbiology : an international research journal of microbiology (01.12.2016)
Published in Journal of pure & applied microbiology : an international research journal of microbiology (01.12.2016)
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Journal Article
Proteome Profiling of 1 to 5 Spiked Circulating Tumor Cells Isolated from Whole Blood Using Immunodensity Enrichment, Laser Capture Microdissection, Nanodroplet Sample Processing, and Ultrasensitive nanoLC–MS
Zhu, Ying, Podolak, Jennifer, Zhao, Rui, Shukla, Anil K, Moore, Ronald J, Thomas, George V, Kelly, Ryan T
Published in Analytical chemistry (Washington) (16.10.2018)
Published in Analytical chemistry (Washington) (16.10.2018)
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Journal Article
Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets
Zhu, Ying, Dou, Maowei, Piehowski, Paul D., Liang, Yiran, Wang, Fangjun, Chu, Rosalie K., Chrisler, William B., Smith, Jordan N., Schwarz, Kaitlynn C., Shen, Yufeng, Shukla, Anil K., Moore, Ronald J., Smith, Richard D., Qian, Wei-Jun, Kelly, Ryan T.
Published in Molecular & cellular proteomics (01.09.2018)
Published in Molecular & cellular proteomics (01.09.2018)
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Journal Article
Informed-Proteomics: open-source software package for top-down proteomics
Park, Jungkap, Piehowski, Paul D, Wilkins, Christopher, Zhou, Mowei, Mendoza, Joshua, Fujimoto, Grant M, Gibbons, Bryson C, Shaw, Jared B, Shen, Yufeng, Shukla, Anil K, Moore, Ronald J, Liu, Tao, Petyuk, Vladislav A, Tolić, Nikola, Paša-Tolić, Ljiljana, Smith, Richard D, Payne, Samuel H, Kim, Sangtae
Published in Nature methods (01.09.2017)
Published in Nature methods (01.09.2017)
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