Identification and Quantification of Proteoforms by Mass Spectrometry
Schaffer, Leah V., Millikin, Robert J., Miller, Rachel M., Anderson, Lissa C., Fellers, Ryan T., Ge, Ying, Kelleher, Neil L., LeDuc, Richard D., Liu, Xiaowen, Payne, Samuel H., Sun, Liangliang, Thomas, Paul M., Tucholski, Trisha, Wang, Zhe, Wu, Si, Wu, Zhijie, Yu, Dahang, Shortreed, Michael R., Smith, Lloyd M.
Published in Proteomics (Weinheim) (01.05.2019)
Published in Proteomics (Weinheim) (01.05.2019)
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Journal Article
Enhanced protein isoform characterization through long-read proteogenomics
Miller, Rachel M, Jordan, Ben T, Mehlferber, Madison M, Jeffery, Erin D, Chatzipantsiou, Christina, Kaur, Simi, Millikin, Robert J, Dai, Yunxiang, Tiberi, Simone, Castaldi, Peter J, Shortreed, Michael R, Luckey, Chance John, Conesa, Ana, Smith, Lloyd M, Deslattes Mays, Anne, Sheynkman, Gloria M
Published in Genome Biology (03.03.2022)
Published in Genome Biology (03.03.2022)
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Journal Article
Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction
Hallows, William C., Yu, Wei, Smith, Brian C., Devires, Mark K., Ellinger, James J., Someya, Shinichi, Shortreed, Michael R., Prolla, Tomas, Markley, John L., Smith, Lloyd M., Zhao, Shimin, Guan, Kun-Liang, Denu, John M.
Published in Molecular cell (21.01.2011)
Published in Molecular cell (21.01.2011)
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Journal Article
Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation
Sheynkman, Gloria M, Shortreed, Michael R, Cesnik, Anthony J, Smith, Lloyd M
Published in Annual review of analytical chemistry (Palo Alto, Calif.) (12.06.2016)
Published in Annual review of analytical chemistry (Palo Alto, Calif.) (12.06.2016)
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Journal Article
Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys
Proffitt, J Michael, Glenn, Jeremy, Cesnik, Anthony J, Jadhav, Avinash, Shortreed, Michael R, Smith, Lloyd M, Kavanagh, Kylie, Cox, Laura A, Olivier, Michael
Published in BMC genomics (13.11.2017)
Published in BMC genomics (13.11.2017)
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Journal Article
Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance
Zaidan, Nur Zafirah, Walker, Kolin J., Brown, Jaime E., Schaffer, Leah V., Scalf, Mark, Shortreed, Michael R., Iyer, Gopal, Smith, Lloyd M., Sridharan, Rupa
Published in Stem cell reports (13.02.2018)
Published in Stem cell reports (13.02.2018)
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Journal Article
Analysis of Cell Surface Carbohydrate Expression Patterns in Normal and Tumorigenic Human Breast Cell Lines Using Lectin Arrays
Chen, Siyuan, Zheng, Ting, Shortreed, Michael R, Alexander, Caroline, Smith, Lloyd M
Published in Analytical chemistry (Washington) (01.08.2007)
Published in Analytical chemistry (Washington) (01.08.2007)
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Journal Article
Sequence-specific capture of protein-DNA complexes for mass spectrometric protein identification
Wu, Cheng-Hsien, Chen, Siyuan, Shortreed, Michael R, Kreitinger, Gloria M, Yuan, Yuan, Frey, Brian L, Zhang, Yi, Mirza, Shama, Cirillo, Lisa A, Olivier, Michael, Smith, Lloyd M
Published in PloS one (20.10.2011)
Published in PloS one (20.10.2011)
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Journal Article
O-Pair Search with MetaMorpheus for O-glycopeptide characterization
Lu, Lei, Riley, Nicholas M., Shortreed, Michael R., Bertozzi, Carolyn R., Smith, Lloyd M.
Published in Nature methods (01.11.2020)
Published in Nature methods (01.11.2020)
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Journal Article
Enhanced Global Post-translational Modification Discovery with MetaMorpheus
Solntsev, Stefan K, Shortreed, Michael R, Frey, Brian L, Smith, Lloyd M
Published in Journal of proteome research (04.05.2018)
Published in Journal of proteome research (04.05.2018)
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Journal Article
Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet
Yau, Belinda, Naghiloo, Sheyda, Diaz-Vegas, Alexis, Carr, Austin V., Van Gerwen, Julian, Needham, Elise J., Jevon, Dillon, Chen, Sing-Young, Hoehn, Kyle L., Brandon, Amanda E., Macia, Laurence, Cooney, Gregory J., Shortreed, Michael R., Smith, Lloyd M., Keller, Mark P., Thorn, Peter, Larance, Mark, James, David E., Humphrey, Sean J., Kebede, Melkam A.
Published in iScience (22.10.2021)
Published in iScience (22.10.2021)
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Journal Article
Relative Quantification of Carboxylic Acid Metabolites by Liquid Chromatography−Mass Spectrometry Using Isotopic Variants of Cholamine
Lamos, Shane M, Shortreed, Michael R, Frey, Brian L, Belshaw, Peter J, Smith, Lloyd M
Published in Analytical chemistry (Washington) (15.07.2007)
Published in Analytical chemistry (Washington) (15.07.2007)
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Journal Article
Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform
Mehta, Subina, Easterly, Caleb W, Sajulga, Ray, Millikin, Robert J, Argentini, Andrea, Eguinoa, Ignacio, Martens, Lennart, Shortreed, Michael R, Smith, Lloyd M, McGowan, Thomas, Kumar, Praveen, Johnson, James E, Griffin, Timothy J, Jagtap, Pratik D
Published in Proteomes (08.07.2020)
Published in Proteomes (08.07.2020)
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Journal Article
Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers
Cesnik, Anthony J., Yang, Bing, Truong, Andrew, Etheridge, Tyler, Spiniello, Michele, Steinbrink, Maisie I., Shortreed, Michael R., Frey, Brian L., Jarrard, David F., Smith, Lloyd M.
Published in Translational oncology (01.06.2018)
Published in Translational oncology (01.06.2018)
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Journal Article
Mesh Fragmentation Improves Dissociation Efficiency in Top-down Proteomics
Lu, Lei, Scalf, Mark, Shortreed, Michael R, Smith, Lloyd M
Published in Journal of the American Society for Mass Spectrometry (02.06.2021)
Published in Journal of the American Society for Mass Spectrometry (02.06.2021)
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Journal Article
Ultrafast Peptide Label-Free Quantification with FlashLFQ
Millikin, Robert J, Solntsev, Stefan K, Shortreed, Michael R, Smith, Lloyd M
Published in Journal of proteome research (05.01.2018)
Published in Journal of proteome research (05.01.2018)
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Journal Article
Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion
Rolfs, Zach, Solntsev, Stefan K, Shortreed, Michael R, Frey, Brian L, Smith, Lloyd M
Published in Journal of proteome research (04.01.2019)
Published in Journal of proteome research (04.01.2019)
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