Maturation of high-density lipoproteins
Shih, Amy Y., Sligar, Stephen G., Schulten, Klaus
Published in Journal of the Royal Society interface (06.10.2009)
Published in Journal of the Royal Society interface (06.10.2009)
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Journal Article
Dynamic Structural Differences between Human and Mouse STING Lead to Differing Sensitivity to DMXAA
Shih, Amy Y., Damm-Ganamet, Kelly L., Mirzadegan, Taraneh
Published in Biophysical journal (09.01.2018)
Published in Biophysical journal (09.01.2018)
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Journal Article
Impact of Protein Preparation on Resulting Accuracy of FEP Calculations
Shih, Amy Y, Hack, Michael, Mirzadegan, Taraneh
Published in Journal of chemical information and modeling (23.11.2020)
Published in Journal of chemical information and modeling (23.11.2020)
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Journal Article
Molecular Dynamics Simulations of Discoidal Bilayers Assembled from Truncated Human Lipoproteins
Shih, Amy Y., Denisov, Ilia G., Phillips, James C., Sligar, Stephen G., Schulten, Klaus
Published in Biophysical journal (01.01.2005)
Published in Biophysical journal (01.01.2005)
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Journal Article
pH Dependence of a GPR4 Selective Antagonist Hampers Its Therapeutic Potential
Stalewski, Jacek, Shih, Amy Y, Papazyan, Romeo, Ramirez, Jocelyn, Ibanez, Gerardo, Hsiao, Peng, Yue, Yong, Yin, Jun, Badger, Calen, Wu, Shije, Ueki, Akemi, Fuchs, Bryan C, Rives, Marie-Laure
Published in The Journal of pharmacology and experimental therapeutics (01.07.2023)
Published in The Journal of pharmacology and experimental therapeutics (01.07.2023)
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Journal Article
Coarse Grained Protein−Lipid Model with Application to Lipoprotein Particles
Shih, Amy Y, Arkhipov, Anton, Freddolino, Peter L, Schulten, Klaus
Published in The journal of physical chemistry. B (02.03.2006)
Published in The journal of physical chemistry. B (02.03.2006)
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Journal Article
Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations
Shih, Amy Y., Freddolino, Peter L., Arkhipov, Anton, Schulten, Klaus
Published in Journal of structural biology (01.03.2007)
Published in Journal of structural biology (01.03.2007)
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Journal Article
Breaking the Glass Ceiling in Simulation and Modeling: Women in Pharmaceutical Discovery
Damm-Ganamet, Kelly L, DesJarlais, Renee L, Marrone, Tami, Shih, Amy Y, Schiffer, Jamie M, Perez-Benito, Laura, Mirzadegan, Taraneh
Published in Journal of medicinal chemistry (12.03.2020)
Published in Journal of medicinal chemistry (12.03.2020)
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Journal Article
Development of small molecule inhibitors of natural killer group 2D receptor (NKG2D)
Wang, Jocelyn, Nakafuku, Kohki M., Ziff, Jeannie, Gelin, Christine F., Gholami, Hadi, Thompson, Aaron A., Karpowich, Nathan K., Limon, Luis, Coate, Heather R., Damm-Ganamet, Kelly L., Shih, Amy Y., Grant, Joanna C., Côte, Marjorie, Mak, Puiying A., Pascual, Heather A., Rives, Marie-Laure, Edwards, James P., Venable, Jennifer D., Venkatesan, Hariharan, Shi, Zhicai, Allen, Samantha J., Sharma, Sujata, Kung, Pei-Pei, Shireman, Brock T.
Published in Bioorganic & medicinal chemistry letters (15.11.2023)
Published in Bioorganic & medicinal chemistry letters (15.11.2023)
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Journal Article
Breaking the Glass Ceiling in Simulation and Modeling: Women in Pharmaceutical Discovery: Miniperspective
Damm-Ganamet, Kelly L, DesJarlais, Renee L, Marrone, Tami, Shih, Amy Y, Schiffer, Jamie M, Perez-Benito, Laura, Mirzadegan, Taraneh
Published in Journal of medicinal chemistry (12.03.2020)
Published in Journal of medicinal chemistry (12.03.2020)
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Journal Article
Analysis of the Structural and Molecular Basis of Voltage-sensitive Sodium Channel Inhibition by the Spider Toxin Huwentoxin-IV (μ-TRTX-Hh2a)
Minassian, Natali A., Gibbs, Alan, Shih, Amy Y., Liu, Yi, Neff, Robert A., Sutton, Steven W., Mirzadegan, Tara, Connor, Judith, Fellows, Ross, Husovsky, Matthew, Nelson, Serena, Hunter, Michael J., Flinspach, Mack, Wickenden, Alan D.
Published in The Journal of biological chemistry (02.08.2013)
Published in The Journal of biological chemistry (02.08.2013)
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Journal Article
Identification of small-molecule protein-protein interaction inhibitors for NKG2D
Thompson, Aaron A, Harbut, Michael B, Kung, Pei-Pei, Karpowich, Nathan K, Branson, Jeffrey D, Grant, Joanna C, Hagan, Deborah, Pascual, Heather A, Bai, Guoyun, Zavareh, Reza Beheshti, Coate, Heather R, Collins, Bernard C, Côte, Marjorie, Gelin, Christine F, Damm-Ganamet, Kelly L, Gholami, Hadi, Huff, Adam R, Limon, Luis, Lumb, Kevin J, Mak, Puiying A, Nakafuku, Kohki M, Price, Edmund V, Shih, Amy Y, Tootoonchi, Mandana, Vellore, Nadeem A, Wang, Jocelyn, Wei, Na, Ziff, Jeannie, Berger, Scott B, Edwards, James P, Gardet, Agnès, Sun, Siquan, Towne, Jennifer E, Venable, Jennifer D, Shi, Zhicai, Venkatesan, Hariharan, Rives, Marie-Laure, Sharma, Sujata, Shireman, Brock T, Allen, Samantha J
Published in Proceedings of the National Academy of Sciences - PNAS (02.05.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (02.05.2023)
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Journal Article
Disassembly of Nanodiscs with Cholate
Shih, Amy Y., Freddolino, Peter L., Sligar, Stephen G., Schulten, Klaus
Published in Nano letters (01.06.2007)
Published in Nano letters (01.06.2007)
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Journal Article
Comprehensive engineering of the tarantula venom peptide huwentoxin-IV to inhibit the human voltage-gated sodium channel hNav1.7
Neff, Robert A., Flinspach, Mack, Gibbs, Alan, Shih, Amy Y., Minassian, Natali A., Liu, Yi, Fellows, Ross, Libiger, Ondrej, Young, Stephanie, Pennington, Michael W., Hunter, Michael J., Wickenden, Alan D.
Published in The Journal of biological chemistry (31.01.2020)
Published in The Journal of biological chemistry (31.01.2020)
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Journal Article
Comprehensive engineering of the tarantula venom peptide huwentoxin-IV to inhibit the human voltage-gated sodium channel hNa v 1.7
Neff, Robert A, Flinspach, Mack, Gibbs, Alan, Shih, Amy Y, Minassian, Natali A, Liu, Yi, Fellows, Ross, Libiger, Ondrej, Young, Stephanie, Pennington, Michael W, Hunter, Michael J, Wickenden, Alan D
Published in The Journal of biological chemistry (31.01.2020)
Published in The Journal of biological chemistry (31.01.2020)
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Journal Article
Assembly of Lipids and Proteins into Lipoprotein Particles
Shih, Amy Y, Arkhipov, Anton, Freddolino, Peter L, Sligar, Stephen G, Schulten, Klaus
Published in The journal of physical chemistry. B (27.09.2007)
Published in The journal of physical chemistry. B (27.09.2007)
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Journal Article
Identification of structural motifs critical for epstein-barr virus-induced molecule 2 function and homology modeling of the ligand docking site
Zhang, Li, Shih, Amy Y, Yang, Xia V, Kuei, Chester, Wu, Jiejun, Deng, Xiaohu, Mani, Neelakandha S, Mirzadegan, Taraneh, Sun, Siquan, Lovenberg, Timothy W, Liu, Changlu
Published in Molecular pharmacology (01.12.2012)
Published in Molecular pharmacology (01.12.2012)
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Journal Article