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Published in Genome research (01.04.2018)
Published in Genome research (01.04.2018)
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Mutational processes shape the landscape of TP53 mutations in human cancer
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Published in Nature genetics (01.10.2018)
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High-quality draft assemblies of mammalian genomes from massively parallel sequence data
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Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (25.01.2011)
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Prospective functional classification of all possible missense variants in PPARG
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Published in Nature genetics (01.12.2016)
Published in Nature genetics (01.12.2016)
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Finished bacterial genomes from shotgun sequence data
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Published in Genome research (01.11.2012)
Published in Genome research (01.11.2012)
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Comprehensive mutational scanning of EGFR reveals TKI sensitivities of extracellular domain mutants
Hayes, Tikvah K., Aquilanti, Elisa, Persky, Nicole S., Yang, Xiaoping, Kim, Erica E., Brenan, Lisa, Goodale, Amy B., Alan, Douglas, Sharpe, Ted, Shue, Robert E., Westlake, Lindsay, Golomb, Lior, Silverman, Brianna R., Morris, Myshal D., Fisher, Ty Running, Beyene, Eden, Li, Yvonne Y., Cherniack, Andrew D., Piccioni, Federica, Hicks, J. Kevin, Chi, Andrew S., Cahill, Daniel P., Dietrich, Jorg, Batchelor, Tracy T., Root, David E., Johannessen, Cory M., Meyerson, Matthew
Published in Nature communications (28.03.2024)
Published in Nature communications (28.03.2024)
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Author Correction: Comprehensive mutational scanning of EGFR reveals TKI sensitivities of extracellular domain mutants
Hayes, Tikvah K., Aquilanti, Elisa, Persky, Nicole S., Yang, Xiaoping, Kim, Erica E., Brenan, Lisa, Goodale, Amy B., Alan, Douglas, Sharpe, Ted, Shue, Robert E., Westlake, Lindsay, Golomb, Lior, Silverman, Brianna R., Morris, Myshal D., Fisher, Ty Running, Beyene, Eden, Li, Yvonne Y., Cherniack, Andrew D., Piccioni, Federica, Hicks, J. Kevin, Chi, Andrew S., Cahill, Daniel P., Dietrich, Jorg, Batchelor, Tracy T., Root, David E., Johannessen, Cory M., Meyerson, Matthew
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Published in Nature communications (16.04.2024)
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GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts
Walker, Mark A, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I, Bullman, Susan, Sharpe, Ted, Whelan, Christopher W, Meyerson, Matthew
Published in Bioinformatics (15.12.2018)
Published in Bioinformatics (15.12.2018)
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Comprehensive variation discovery in single human genomes
Weisenfeld, Neil I, Yin, Shuangye, Sharpe, Ted, Lau, Bayo, Hegarty, Ryan, Holmes, Laurie, Sogoloff, Brian, Tabbaa, Diana, Williams, Louise, Russ, Carsten, Nusbaum, Chad, Lander, Eric S, MacCallum, Iain, Jaffe, David B
Published in Nature genetics (01.12.2014)
Published in Nature genetics (01.12.2014)
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Published in Nature (London) (25.03.2010)
Published in Nature (London) (25.03.2010)
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Published in Genome Biology (01.01.2012)
Published in Genome Biology (01.01.2012)
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Author Correction: A structural variation reference for medical and population genetics
Collins, Ryan L., Brand, Harrison, Karczewski, Konrad J., Zhao, Xuefang, Alföldi, Jessica, Francioli, Laurent C., Khera, Amit V., Lowther, Chelsea, Gauthier, Laura D., Wang, Harold, Watts, Nicholas A., Solomonson, Matthew, O’Donnell-Luria, Anne, Baumann, Alexander, Munshi, Ruchi, Walker, Mark, Whelan, Christopher W., Huang, Yongqing, Brookings, Ted, Sharpe, Ted, Stone, Matthew R., Valkanas, Elise, Fu, Jack, Tiao, Grace, Laricchia, Kristen M., Ruano-Rubio, Valentin, Stevens, Christine, Gupta, Namrata, Cusick, Caroline, Margolin, Lauren, Taylor, Kent D., Lin, Henry J., Rich, Stephen S., Post, Wendy S., Chen, Yii-Der Ida, Rotter, Jerome I., Nusbaum, Chad, Philippakis, Anthony, Lander, Eric, Gabriel, Stacey, Neale, Benjamin M., Kathiresan, Sekar, Daly, Mark J., Banks, Eric, MacArthur, Daniel G., Talkowski, Michael E.
Published in Nature (London) (18.02.2021)
Published in Nature (London) (18.02.2021)
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Abstract 1220: Deep mutational scanning of EGFR reveals potential domain-specific TKI sensitivities in lung cancer and glioblastoma
Hayes, Tikvah, Aquilanti, Elisa, Kim, Erica, Persky, Nicole, Brenan, Lisa, Goodale, Amy, Sharpe, Ted, Alan, Doug, Shue, Robert, Golomb, Lior, Silverman, Brianna, Li, Yvonne, Westlake, Lindsay, Piccioni, Federica, Cherniack, Andrew, Yang, Xiaoping Yang, Root, David, Hicks, J. Kevin, Chi, Andrew, Dietrich, Jorg, Cahill, Daniel, Johannessen, Cory, Batchelor, Tracy, Meyerson, Matthew
Published in Cancer research (Chicago, Ill.) (22.03.2024)
Published in Cancer research (Chicago, Ill.) (22.03.2024)
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Analysis of the African coelacanth genome sheds light on tetrapod evolution
Amemiya, Chris T., Alföldi, Jessica, Lee, Alison P., Fan, Shaohua, Philippe, Hervé, MacCallum, Iain, Braasch, Ingo, Manousaki, Tereza, Schneider, Igor, Rohner, Nicolas, Organ, Chris, Chalopin, Domitille, Smith, Jeramiah J., Robinson, Mark, Dorrington, Rosemary A., Gerdol, Marco, Aken, Bronwen, Biscotti, Maria Assunta, Barucca, Marco, Baurain, Denis, Berlin, Aaron M., Blatch, Gregory L., Buonocore, Francesco, Burmester, Thorsten, Campbell, Michael S., Canapa, Adriana, Cannon, John P., Christoffels, Alan, De Moro, Gianluca, Edkins, Adrienne L., Fan, Lin, Fausto, Anna Maria, Feiner, Nathalie, Forconi, Mariko, Gamieldien, Junaid, Gnerre, Sante, Gnirke, Andreas, Goldstone, Jared V., Haerty, Wilfried, Hahn, Mark E., Hesse, Uljana, Hoffmann, Steve, Johnson, Jeremy, Karchner, Sibel I., Kuraku, Shigehiro, Lara, Marcia, Levin, Joshua Z., Litman, Gary W., Mauceli, Evan, Miyake, Tsutomu, Mueller, M. Gail, Nelson, David R., Nitsche, Anne, Olmo, Ettore, Ota, Tatsuya, Pallavicini, Alberto, Panji, Sumir, Picone, Barbara, Ponting, Chris P., Prohaska, Sonja J., Przybylski, Dariusz, Saha, Nil Ratan, Ravi, Vydianathan, Ribeiro, Filipe J., Sauka-Spengler, Tatjana, Scapigliati, Giuseppe, Searle, Stephen M. J., Sharpe, Ted, Simakov, Oleg, Stadler, Peter F., Stegeman, John J., Sumiyama, Kenta, Tabbaa, Diana, Tafer, Hakim, Turner-Maier, Jason, van Heusden, Peter, White, Simon, Williams, Louise, Yandell, Mark, Brinkmann, Henner, Volff, Jean-Nicolas, Tabin, Clifford J., Shubin, Neil, Schartl, Manfred, Jaffe, David, Postlethwait, John H., Venkatesh, Byrappa, Di Palma, Federica, Lander, Eric S., Meyer, Axel, Lindblad-Toh, Kerstin
Published in Nature (London) (18.04.2013)
Published in Nature (London) (18.04.2013)
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DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage
Zody, Michael C, Garber, Manuel, Adams, David J, Sharpe, Ted, Harrow, Jennifer, Lupski, James R, Nicholson, Christine, Searle, Steven M, Wilming, Laurens, Young, Sarah K, Abouelleil, Amr, Allen, Nicole R, Bi, Weimin, Bloom, Toby, Borowsky, Mark L, Bugalter, Boris E, Butler, Jonathan, Chang, Jean L, Chen, Chao-Kung
Published in Nature (21.04.2006)
Published in Nature (21.04.2006)
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Analysis of the DNA sequence and duplication history of human chromosome 15
Zody, Michael C, Garber, Manuel, Sharpe, Ted, Young, Sarah K, Rowen, Lee, O'Neill, Keith, Whittaker, Charles A, Kamal, Michael, Chang, Jean L, Cuomo, Christina A, Dewar, Ken, FitzGerald, Michael G, Kodira, Chinnappa D, Madan, Anup, Qin, Shizhen, Yang, Xiaoping, Abbasi, Nissa, Abouelleil, Amr, Arachchi, Harindra M
Published in Nature (30.03.2006)
Published in Nature (30.03.2006)
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An open resource of structural variation for medical and population genetics
Collins, Ryan L, Brand, Harrison, Karczewski, Konrad J, Zhao, Xuefang, Alföldi, Jessica, Francioli, Laurent C, Khera, Amit V, Lowther, Chelsea, Gauthier, Laura D, Wang, Harold, Watts, Nicholas A, Solomonson, Matthew, O'donnell-Luria, Anne, Baumann, Alexander, Munshi, Ruchi, Walker, Mark, Whelan, Christopher, Huang, Yongquing, Brookings, Ted, Sharpe, Ted, Stone, Matthew R, Valkanas, Elise, Fu, Jack, Tiao, Grace, Laricchia, Kristen M, Ruano-Rubio, Valentin, Stevens, Christine, Gupta, Namrata, Margolin, Lauren, Genome Aggregation Database Consortium, Taylor, Kent D, Lin, Henry J, Rich, Stephen S, Post, Wendy, Chen, Yii-Der Ida, Rotter, Jerome I, Nusbaum, Chad, Philippakis, Anthony, Lander, Eric, Gabriel, Stacey, Neale, Benjamin M, Sekar Kathiresan, Daly, Mark J, Banks, Eric, Macarthur, Daniel G, Talkowski, Michael E
Published in bioRxiv (21.10.2019)
Published in bioRxiv (21.10.2019)
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Genome-wide detection of structural variants and indels by local assembly
Wala, Jeremiah, Bandopadhayay, Pratiti, Greenwald, Noah, O'rourke, Ryan, Sharpe, Ted, Stewart, Chip, Schumacher, Steven E, Li, Yilong, Weischenfeldt, Joachim, Yao, Xiaotong, Nusbaum, Chad, Campbell, Peter, Meyerson, Matthew, Cheng-Zhong, Zhang, Imielinski, Marcin, Beroukhim, Rameen
Published in bioRxiv (01.02.2017)
Published in bioRxiv (01.02.2017)
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Paper
The African coelacanth genome provides insights into tetrapod evolution
Lee, Alison P, Fan, Shaohua, Philippe, Hervé, MacCallum, Iain, Braasch, Ingo, Manousaki, Tereza, Schneider, Igor, Rohner, Nicolas, Organ, Chris, Chalopin, Domitille, Smith, Jeramiah J, Robinson, Mark, Dorrington, Rosemary A, Gerdol, Marco, Aken, Bronwen, Biscotti, Maria Assunta, Barucca, Marco, Baurain, Denis, Berlin, Aaron M, Blatch, Gregory L, Buonocore, Francesco, Burmester, Thorsten, Campbell, Michael S, Canapa, Adriana, Cannon, John P, Christoffels, Alan, De Moro, Gianluca, Edkins, Adrienne L, Fan, Lin, Fausto, Anna Maria, Feiner, Nathalie, Forconi, Mariko, Gamieldien, Junaid, Gnerre, Sante, Gnirke, Andreas, Goldstone, Jared V, Haerty, Wilfried, Hahn, Mark E, Hesse, Uljana, Hoffmann, Steve, Johnson, Jeremy, Karchner, Sibel I, Kuraku, Shigehiro, Lara, Marcia, Levin, Joshua Z, Litman, Gary W, Mauceli, Evan, Miyake, Tsutomu, Mueller, M Gail, Nelson, David R, Nitsche, Anne, Olmo, Ettore, Ota, Tatsuya, Pallavicini, Alberto, Panji, Sumir, Picone, Barbara, Ponting, Chris P, Prohaska, Sonja J, Przybylski, Dariusz, Saha, Nil Ratan, Ravi, Vydianathan, Ribeiro, Filipe J, Sauka-Spengler, Tatjana, Scapigliati, Giuseppe, Searle, Stephen M. J, Sharpe, Ted, Simakov, Oleg, Stadler, Peter F, Stegeman, John J, Sumiyama, Kenta, Tabbaa, Diana, Tafer, Hakim, Turner-Maier, Jason, van Heusden, Peter, White, Simon, Williams, Louise, Yandell, Mark, Brinkmann, Henner, Volff, Jean-Nicolas, Tabin, Clifford J, Shubin, Neil, Schartl, Manfred, Jaffe, David B, Postlethwait, John H, Venkatesh, Byrappa, Di Palma, Federica, Lander, Eric S
Published in Nature 7445 (496), 311-316. (2013) (2013)
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Published in Nature 7445 (496), 311-316. (2013) (2013)
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