High frequency of shared clonotypes in human B cell receptor repertoires
Soto, Cinque, Bombardi, Robin G., Branchizio, Andre, Kose, Nurgun, Matta, Pranathi, Sevy, Alexander M., Sinkovits, Robert S., Gilchuk, Pavlo, Finn, Jessica A., Crowe, James E.
Published in Nature (London) (01.02.2019)
Published in Nature (London) (01.02.2019)
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Macromolecular modeling and design in Rosetta: recent methods and frameworks
Leman, Julia Koehler, Weitzner, Brian D., Lewis, Steven M., Adolf-Bryfogle, Jared, Alam, Nawsad, Alford, Rebecca F., Aprahamian, Melanie, Baker, David, Barlow, Kyle A., Basanta, Benjamin, Bender, Brian J., Blacklock, Kristin, Bonet, Jaume, Boyken, Scott E., Bradley, Phil, Bystroff, Chris, Conway, Patrick, Cooper, Seth, Correia, Bruno E., Coventry, Brian, Das, Rhiju, DiMaio, Frank, Dsilva, Lorna, Dunbrack, Roland, Ford, Alexander S., Fu, Darwin Y., Geniesse, Caleb, Goldschmidt, Lukasz, Gowthaman, Ragul, Gray, Jeffrey J., Gront, Dominik, Guffy, Sharon, Huang, Po-Ssu, Jacobs, Tim M., Jeliazkov, Jeliazko R., Johnson, David K., Kappel, Kalli, Karanicolas, John, Khakzad, Hamed, Khar, Karen R., Khare, Sagar D., Khatib, Firas, Khramushin, Alisa, King, Indigo C., Kleffner, Robert, Koepnick, Brian, Kortemme, Tanja, Kuenze, Georg, Kuhlman, Brian, Kuroda, Daisuke, Labonte, Jason W., Lai, Jason K., Lapidoth, Gideon, Leaver-Fay, Andrew, Lindert, Steffen, Linsky, Thomas, London, Nir, Lubin, Joseph H., Lyskov, Sergey, Maguire, Jack, Malmström, Lars, Marcos, Enrique, Marcu, Orly, Marze, Nicholas A., Meiler, Jens, Moretti, Rocco, Mulligan, Vikram Khipple, Nerli, Santrupti, Norn, Christoffer, Ollikainen, Noah, Ovchinnikov, Sergey, Pacella, Michael S., Pan, Xingjie, Park, Hahnbeom, Pavlovicz, Ryan E., Pethe, Manasi, Pilla, Kala Bharath, Raveh, Barak, Renfrew, P. Douglas, Burman, Shourya S. Roy, Rubenstein, Aliza, Sauer, Marion F., Scheck, Andreas, Schief, William, Schueler-Furman, Ora, Sedan, Yuval, Sevy, Alexander M., Sgourakis, Nikolaos G., Shi, Lei, Siegel, Justin B., Silva, Daniel-Adriano, Smith, Shannon, Song, Yifan, Stein, Amelie, Szegedy, Maria, Teets, Frank D., Thyme, Summer B., Wang, Ray Yu-Ruei, Watkins, Andrew, Zimmerman, Lior
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Published in Nature methods (01.07.2020)
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Multi-state design of flexible proteins predicts sequences optimal for conformational change
Sauer, Marion F, Sevy, Alexander M, Crowe, Jr, James E, Meiler, Jens
Published in PLoS computational biology (07.02.2020)
Published in PLoS computational biology (07.02.2020)
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Neuroimaging with near-infrared spectroscopy demonstrates speech-evoked activity in the auditory cortex of deaf children following cochlear implantation
Sevy, Alexander B.G., Bortfeld, Heather, Huppert, Theodore J., Beauchamp, Michael S., Tonini, Ross E., Oghalai, John S.
Published in Hearing research (01.12.2010)
Published in Hearing research (01.12.2010)
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Protocols for Molecular Modeling with Rosetta3 and RosettaScripts
Bender, Brian J, Cisneros, Alberto, Duran, Amanda M, Finn, Jessica A, Fu, Darwin, Lokits, Alyssa D, Mueller, Benjamin K, Sangha, Amandeep K, Sauer, Marion F, Sevy, Alexander M, Sliwoski, Gregory, Sheehan, Jonathan H, DiMaio, Frank, Meiler, Jens, Moretti, Rocco
Published in Biochemistry (Easton) (30.08.2016)
Published in Biochemistry (Easton) (30.08.2016)
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Computationally Designed Cyclic Peptides Derived from an Antibody Loop Increase Breadth of Binding for Influenza Variants
Sevy, Alexander M., Gilchuk, Iuliia M., Brown, Benjamin P., Bozhanova, Nina G., Nargi, Rachel, Jensen, Mattie, Meiler, Jens, Crowe, James E.
Published in Structure (London) (06.10.2020)
Published in Structure (London) (06.10.2020)
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Structure- and sequence-based design of synthetic single-domain antibody libraries
Sevy, Alexander M, Chen, Ming-Tang, Castor, Michelle, Sylvia, Tyler, Krishnamurthy, Harini, Ishchenko, Andrii, Hsieh, Chung-Ming
Published in Protein engineering, design and selection (14.09.2020)
Published in Protein engineering, design and selection (14.09.2020)
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Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring
Finn, Jessica A., Dong, Jinhui, Sevy, Alexander M., Parrish, Erica, Gilchuk, Iuliia, Nargi, Rachel, Scarlett-Jones, Morgan, Reichard, Walter, Bombardi, Robin, Voss, Thomas G., Meiler, Jens, Crowe, James E.
Published in Structure (London) (06.10.2020)
Published in Structure (London) (06.10.2020)
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Modeling Immunity with Rosetta: Methods for Antibody and Antigen Design
Schoeder, Clara T, Schmitz, Samuel, Adolf-Bryfogle, Jared, Sevy, Alexander M, Finn, Jessica A, Sauer, Marion F, Bozhanova, Nina G, Mueller, Benjamin K, Sangha, Amandeep K, Bonet, Jaume, Sheehan, Jonathan H, Kuenze, Georg, Marlow, Brennica, Smith, Shannon T, Woods, Hope, Bender, Brian J, Martina, Cristina E, del Alamo, Diego, Kodali, Pranav, Gulsevin, Alican, Schief, William R, Correia, Bruno E, Crowe, James E, Meiler, Jens, Moretti, Rocco
Published in Biochemistry (Easton) (23.03.2021)
Published in Biochemistry (Easton) (23.03.2021)
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Multistate design of influenza antibodies improves affinity and breadth against seasonal viruses
Sevy, Alexander M., Wu, Nicholas C., Gilchuk, Iuliia M., Parrish, Erica H., Burger, Sebastian, Yousif, Dina, Nagel, Marcus B. M., Schey, Kevin L., Wilson, Ian A., Crowe, James E., Meiler, Jens
Published in Proceedings of the National Academy of Sciences - PNAS (29.01.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (29.01.2019)
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Discovery of Marburg virus neutralizing antibodies from virus-naïve human antibody repertoires using large-scale structural predictions
Bozhanova, Nina G., Sangha, Amandeep K., Sevy, Alexander M., Gilchuk, Pavlo, Huang, Kai, Nargi, Rachel S., Reidy, Joseph X., Trivette, Andrew, Carnahan, Robert H., Bukreyev, Alexander, Crowe, James E., Meiler, Jens
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2020)
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Structural basis for nonneutralizing antibody competition at antigenic site II of the respiratory syncytial virus fusion protein
Mousa, Jarrod J., Sauer, Marion F., Sevy, Alexander M., Finn, Jessica A., Bates, John T., Alvarado, Gabriela, King, Hannah G., Loerinc, Leah B., Fong, Rachel H., Doranz, Benjamin J., Correia, Bruno E., Kalyuzhniy, Oleksandr, Wen, Xiaolin, Jardetzky, Theodore S., Schief, William R., Ohi, Melanie D., Meiler, Jens, Crowe, James E.
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (01.11.2016)
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Multifunctional Pan-ebolavirus Antibody Recognizes a Site of Broad Vulnerability on the Ebolavirus Glycoprotein
Gilchuk, Pavlo, Kuzmina, Natalia, Ilinykh, Philipp A., Huang, Kai, Gunn, Bronwyn M., Bryan, Aubrey, Davidson, Edgar, Doranz, Benjamin J., Turner, Hannah L., Fusco, Marnie L., Bramble, Matthew S., Hoff, Nicole A., Binshtein, Elad, Kose, Nurgun, Flyak, Andrew I., Flinko, Robin, Orlandi, Chiara, Carnahan, Robert, Parrish, Erica H., Sevy, Alexander M., Bombardi, Robin G., Singh, Prashant K., Mukadi, Patrick, Muyembe-Tamfum, Jean Jacques, Ohi, Melanie D., Saphire, Erica Ollmann, Lewis, George K., Alter, Galit, Ward, Andrew B., Rimoin, Anne W., Bukreyev, Alexander, Crowe, James E.
Published in Immunity (Cambridge, Mass.) (21.08.2018)
Published in Immunity (Cambridge, Mass.) (21.08.2018)
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Temporal bone fracture requiring facial nerve decompression or repair
Kong, Keonho, Sevy, Alexander
Published in Operative techniques in otolaryngology--head and neck surgery (01.12.2017)
Published in Operative techniques in otolaryngology--head and neck surgery (01.12.2017)
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