Cancer Evolution: Mathematical Models and Computational Inference
Beerenwinkel, Niko, Schwarz, Roland F., Gerstung, Moritz, Markowetz, Florian
Published in Systematic biology (01.01.2015)
Published in Systematic biology (01.01.2015)
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Journal Article
Spatial and temporal heterogeneity in high-grade serous ovarian cancer: a phylogenetic analysis
Schwarz, Roland F, Ng, Charlotte K Y, Cooke, Susanna L, Newman, Scott, Temple, Jillian, Piskorz, Anna M, Gale, Davina, Sayal, Karen, Murtaza, Muhammed, Baldwin, Peter J, Rosenfeld, Nitzan, Earl, Helena M, Sala, Evis, Jimenez-Linan, Mercedes, Parkinson, Christine A, Markowetz, Florian, Brenton, James D
Published in PLoS medicine (01.02.2015)
Published in PLoS medicine (01.02.2015)
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Journal Article
Phylogenetic quantification of intra-tumour heterogeneity
Schwarz, Roland F, Trinh, Anne, Sipos, Botond, Brenton, James D, Goldman, Nick, Markowetz, Florian
Published in PLoS computational biology (01.04.2014)
Published in PLoS computational biology (01.04.2014)
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Journal Article
SMITH: spatially constrained stochastic model for simulation of intra-tumour heterogeneity
Streck, Adam, Kaufmann, Tom L, Schwarz, Roland F
Published in Bioinformatics (Oxford, England) (01.03.2023)
Published in Bioinformatics (Oxford, England) (01.03.2023)
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Journal Article
Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma
Koche, Richard P., Rodriguez-Fos, Elias, Helmsauer, Konstantin, Burkert, Martin, MacArthur, Ian C., Maag, Jesper, Chamorro, Rocio, Munoz-Perez, Natalia, Puiggròs, Montserrat, Dorado Garcia, Heathcliff, Bei, Yi, Röefzaad, Claudia, Bardinet, Victor, Szymansky, Annabell, Winkler, Annika, Thole, Theresa, Timme, Natalie, Kasack, Katharina, Fuchs, Steffen, Klironomos, Filippos, Thiessen, Nina, Blanc, Eric, Schmelz, Karin, Künkele, Annette, Hundsdörfer, Patrick, Rosswog, Carolina, Theissen, Jessica, Beule, Dieter, Deubzer, Hedwig, Sauer, Sascha, Toedling, Joern, Fischer, Matthias, Hertwig, Falk, Schwarz, Roland F., Eggert, Angelika, Torrents, David, Schulte, Johannes H., Henssen, Anton G.
Published in Nature genetics (01.01.2020)
Published in Nature genetics (01.01.2020)
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Journal Article
Quantitative image analysis of cellular heterogeneity in breast tumors complements genomic profiling
Yuan, Yinyin, Failmezger, Henrik, Rueda, Oscar M, Ali, H Raza, Gräf, Stefan, Chin, Suet-Feung, Schwarz, Roland F, Curtis, Christina, Dunning, Mark J, Bardwell, Helen, Johnson, Nicola, Doyle, Sarah, Turashvili, Gulisa, Provenzano, Elena, Aparicio, Sam, Caldas, Carlos, Markowetz, Florian
Published in Science translational medicine (24.10.2012)
Published in Science translational medicine (24.10.2012)
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Journal Article
MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution
Kaufmann, Tom L, Petkovic, Marina, Watkins, Thomas B K, Colliver, Emma C, Laskina, Sofya, Thapa, Nisha, Minussi, Darlan C, Navin, Nicholas, Swanton, Charles, Van Loo, Peter, Haase, Kerstin, Tarabichi, Maxime, Schwarz, Roland F
Published in Genome Biology (14.11.2022)
Published in Genome Biology (14.11.2022)
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Journal Article
Mitogen‐activated protein kinase activity drives cell trajectories in colorectal cancer
Uhlitz, Florian, Bischoff, Philip, Peidli, Stefan, Sieber, Anja, Trinks, Alexandra, Lüthen, Mareen, Obermayer, Benedikt, Blanc, Eric, Ruchiy, Yana, Sell, Thomas, Mamlouk, Soulafa, Arsie, Roberto, Wei, Tzu‐Ting, Klotz‐Noack, Kathleen, Schwarz, Roland F, Sawitzki, Birgit, Kamphues, Carsten, Beule, Dieter, Landthaler, Markus, Sers, Christine, Horst, David, Blüthgen, Nils, Morkel, Markus
Published in EMBO molecular medicine (07.10.2021)
Published in EMBO molecular medicine (07.10.2021)
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Journal Article
Spontaneous single-nucleotide substitutions and microsatellite mutations have distinct distributions of fitness effects
Plavskin, Yevgeniy, de Biase, Maria Stella, Ziv, Naomi, Janská, Libuše, Zhu, Yuan O, Hall, David W, Schwarz, Roland F, Tranchina, Daniel, Siegal, Mark L
Published in PLoS biology (01.07.2024)
Published in PLoS biology (01.07.2024)
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Journal Article
Retraction: A Temperature‐, pH‐ and Voltage‐Responsive Nanogate with a Remarkably High Factor of Change in Ion Currents due to ON/OFF Switching
Dettori, Riccardo, Yang, Quan, Achenie, Luke E. K., Schwarz, Roland D.
Published in Chemistry : a European journal (28.03.2022)
Published in Chemistry : a European journal (28.03.2022)
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Journal Article
Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity
Watkins, Thomas B K, Colliver, Emma C, Huska, Matthew R, Kaufmann, Tom L, Lim, Emilia L, Duncan, Cody B, Haase, Kerstin, Van Loo, Peter, Swanton, Charles, McGranahan, Nicholas, Schwarz, Roland F
Published in PLoS computational biology (23.10.2023)
Published in PLoS computational biology (23.10.2023)
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Journal Article
Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome
Joseph, Biju, Schwarz, Roland F, Linke, Burkhard, Blom, Jochen, Becker, Anke, Claus, Heike, Goesmann, Alexander, Frosch, Matthias, Müller, Tobias, Vogel, Ulrich, Schoen, Christoph
Published in PloS one (26.04.2011)
Published in PloS one (26.04.2011)
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Journal Article
GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data
Markowski, Julia, Kempfer, Rieke, Kukalev, Alexander, Irastorza-Azcarate, Ibai, Loof, Gesa, Kehr, Birte, Pombo, Ana, Rahmann, Sven, Schwarz, Roland F
Published in Bioinformatics (Oxford, England) (11.10.2021)
Published in Bioinformatics (Oxford, England) (11.10.2021)
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Journal Article
Pervasive structural heterogeneity rewires glioblastoma chromosomes to sustain patient-specific transcriptional programs
Xie, Ting, Danieli-Mackay, Adi, Buccarelli, Mariachiara, Barbieri, Mariano, Papadionysiou, Ioanna, D’Alessandris, Q. Giorgio, Robens, Claudia, Übelmesser, Nadine, Vinchure, Omkar Suhas, Lauretti, Liverana, Fotia, Giorgio, Schwarz, Roland F., Wang, Xiaotao, Ricci-Vitiani, Lucia, Gopalakrishnan, Jay, Pallini, Roberto, Papantonis, Argyris
Published in Nature communications (09.05.2024)
Published in Nature communications (09.05.2024)
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Journal Article
Entirely noninvasive outcome prediction in central nervous system lymphomas using circulating tumor DNA
Heger, Jan-Michel, Mattlener, Julia, Schneider, Jessica, Gödel, Philipp, Sieg, Noëlle, Ullrich, Fabian, Lewis, Richard, Bucaciuc-Mracica, Teodora, Schwarz, Roland F., Rueß, Daniel, Ruge, Maximilian I., Montesinos-Rongen, Manuel, Deckert, Martina, Blau, Tobias, Kutsch, Nadine, Balke-Want, Hyatt, Weiss, Jonathan, Becker, Kerstin, Reinhardt, H. Christian, Hallek, Michael, Borchmann, Peter, von Tresckow, Bastian, Borchmann, Sven
Published in Blood (08.02.2024)
Published in Blood (08.02.2024)
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