Intercellular extrachromosomal DNA copy-number heterogeneity drives neuroblastoma cell state diversity
Stöber, Maja C., Chamorro González, Rocío, Brückner, Lotte, Conrad, Thomas, Wittstruck, Nadine, Szymansky, Annabell, Eggert, Angelika, Schulte, Johannes H., Koche, Richard P., Henssen, Anton G., Schwarz, Roland F., Haase, Kerstin
Published in Cell reports (Cambridge) (24.09.2024)
Published in Cell reports (Cambridge) (24.09.2024)
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Journal Article
Parallel sequencing of extrachromosomal circular DNAs and transcriptomes in single cancer cells
Chamorro González, Rocío, Conrad, Thomas, Stöber, Maja C., Xu, Robin, Giurgiu, Mădălina, Rodriguez-Fos, Elias, Kasack, Katharina, Brückner, Lotte, van Leen, Eric, Helmsauer, Konstantin, Dorado Garcia, Heathcliff, Stefanova, Maria E., Hung, King L., Bei, Yi, Schmelz, Karin, Lodrini, Marco, Mundlos, Stefan, Chang, Howard Y., Deubzer, Hedwig E., Sauer, Sascha, Eggert, Angelika, Schulte, Johannes H., Schwarz, Roland F., Haase, Kerstin, Koche, Richard P., Henssen, Anton G.
Published in Nature genetics (01.05.2023)
Published in Nature genetics (01.05.2023)
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Journal Article
ITS2 Database III--sequences and structures for phylogeny
Koetschan, Christian, Förster, Frank, Keller, Alexander, Schleicher, Tina, Ruderisch, Benjamin, Schwarz, Roland, Müller, Tobias, Wolf, Matthias, Schultz, Jörg
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
The rate of spontaneous mutations in yeast deficient for MutSβ function
Plavskin, Yevgeniy, de Biase, Maria Stella, Schwarz, Roland F, Siegal, Mark L
Published in G3 : genes - genomes - genetics (09.03.2023)
Published in G3 : genes - genomes - genetics (09.03.2023)
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Journal Article
Retracted: A Temperature‐, pH‐ and Voltage‐Responsive Nanogate with a Remarkably High Factor of Change in Ion Currents due to ON/OFF Switching
Dettori, Riccardo, Yang, Quan, Achenie, Luke E. K., Schwarz, Roland D.
Published in Chemistry : a European journal (17.12.2018)
Published in Chemistry : a European journal (17.12.2018)
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Journal Article
Smoking-associated gene expression alterations in nasal epithelium reveal immune impairment linked to lung cancer risk
de Biase, Maria Stella, Massip, Florian, Wei, Tzu-Ting, Giorgi, Federico M, Stark, Rory, Stone, Amanda, Gladwell, Amy, O'Reilly, Martin, Schütte, Daniel, de Santiago, Ines, Meyer, Kerstin B, Markowetz, Florian, Ponder, Bruce A J, Rintoul, Robert C, Schwarz, Roland F
Published in Genome medicine (08.04.2024)
Published in Genome medicine (08.04.2024)
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Journal Article
IL-33 Expression Is Lower in Current Smokers at both Transcriptomic and Protein Levels
Faiz, Alen, Mahbub, Rashad M, Boedijono, Fia Sabrina, Tomassen, Milan I, Kooistra, Wierd, Timens, Wim, Nawijn, Martijn, Hansbro, Philip M, Johansen, Matt D, Pouwels, Simon D, Heijink, Irene H, Massip, Florian, de Biase, Maria Stella, Schwarz, Roland F, Adcock, Ian M, Chung, Kian F, van der Does, Anne, Hiemstra, Pieter S, Goulaouic, Helene, Xing, Heming, Abdulai, Raolat, de Rinaldis, Emanuele, Cunoosamy, Danen, Harel, Sivan, Lederer, David, Nivens, Michael C, Wark, Peter A, Kerstjens, Huib A M, Hylkema, Machteld N, Brandsma, Corry-Anke, van den Berge, Maarten
Published in American journal of respiratory and critical care medicine (15.11.2023)
Published in American journal of respiratory and critical care medicine (15.11.2023)
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Journal Article
IL-33 Expression Is Lower in Current Smokers at Both Transcriptomic and Protein Level
Faiz, Alen, Mahbub, Rashad M, Boedijono, Fia Sabrina, Tomassen, Milan I, Kooistra, Wierd, Timens, Wim, Nawijn, Martijn, Hansbro, Philip M, Johansen, Matt D, Pouwels, Simon D, Heijink, Irene H, Massip, Florian, de Biase, Maria Stella, Schwarz, Roland F, Adcock, Ian M, Chung, Kian F, van der Does, Anne, Hiemstra, Pieter S, Goulaouic, Helene, Xing, Heming, Abdulai, Raolat, de Rinaldis, Emanuele, Cunoosamy, Danen, Harel, Sivan, Lederer, David, Nivens, Michael C, Wark, Peter A, Kerstjens, Huib A M, Hylkema, Machteld N, Brandsma, Corry-Anke, van den Berge, Maarten
Published in American journal of respiratory and critical care medicine (14.09.2023)
Published in American journal of respiratory and critical care medicine (14.09.2023)
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Journal Article
Author Correction: The evolution of lung cancer and impact of subclonal selection in TRACERx
Frankell, Alexander M., Dietzen, Michelle, Al Bakir, Maise, Lim, Emilia L., Karasaki, Takahiro, Ward, Sophia, Veeriah, Selvaraju, Colliver, Emma, Huebner, Ariana, Bunkum, Abigail, Hill, Mark S., Grigoriadis, Kristiana, Moore, David A., Black, James R. M., Liu, Wing Kin, Thol, Kerstin, Pich, Oriol, Watkins, Thomas B. K., Naceur-Lombardelli, Cristina, Cook, Daniel E., Salgado, Roberto, Wilson, Gareth A., Bailey, Chris, Angelova, Mihaela, Bentham, Robert, Martínez-Ruiz, Carlos, Abbosh, Christopher, Nicholson, Andrew G., Le Quesne, John, Biswas, Dhruva, Rosenthal, Rachel, Puttick, Clare, Hessey, Sonya, Lee, Claudia, Prymas, Paulina, Toncheva, Antonia, Smith, Jon, Xing, Wei, Nicod, Jerome, Price, Gillian, Kerr, Keith M., Naidu, Babu, Middleton, Gary, Blyth, Kevin G., Fennell, Dean A., Forster, Martin D., Lee, Siow Ming, Falzon, Mary, Hewish, Madeleine, Shackcloth, Michael J., Lim, Eric, Benafif, Sarah, Russell, Peter, Boleti, Ekaterini, Krebs, Matthew G., Lester, Jason F., Papadatos-Pastos, Dionysis, Ahmad, Tanya, Thakrar, Ricky M., Lawrence, David, Navani, Neal, Janes, Sam M., Dive, Caroline, Blackhall, Fiona H., Summers, Yvonne, Cave, Judith, Marafioti, Teresa, Herrero, Javier, Quezada, Sergio A., Peggs, Karl S., Schwarz, Roland F., Van Loo, Peter, Miedema, Daniël M., Birkbak, Nicolai J., Hiley, Crispin T., Hackshaw, Allan, Zaccaria, Simone, Jamal-Hanjani, Mariam, McGranahan, Nicholas, Swanton, Charles
Published in Nature (London) (25.07.2024)
Published in Nature (London) (25.07.2024)
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Determinants of expression of SARS‐CoV‐2 entry‐related genes in upper and lower airways
Aliee, Hananeh, Massip, Florian, Qi, Cancan, Stella de Biase, Maria, Nijnatten, Jos, Kersten, Elin T. G., Kermani, Nazanin Z., Khuder, Basil, Vonk, Judith M., Vermeulen, Roel C. H., Neighbors, Margaret, Tew, Gaik W., Grimbaldeston, Michele A., Hacken, Nick H. T., Hu, Sile, Guo, Yike, Zhang, Xiaoyu, Sun, Kai, Hiemstra, Pieter S., Ponder, Bruce A., Mäkelä, Mika J., Malmström, Kristiina, Rintoul, Robert C, Reyfman, Paul A., Theis, Fabian J., Brandsma, Corry‐Anke, Adcock, Ian M., Timens, Wim, Xu, Cheng‐Jian, Berge, Maarten, Schwarz, Roland F., Koppelman, Gerard H., Nawijn, M.C., Faiz, Alen
Published in Allergy (Copenhagen) (01.02.2022)
Published in Allergy (Copenhagen) (01.02.2022)
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Author Correction: Genomic basis for RNA alterations in cancer
Calabrese, Claudia, Davidson, Natalie R., Demircioğlu, Deniz, Fonseca, Nuno A., He, Yao, Kahles, André, Lehmann, Kjong-Van, Liu, Fenglin, Shiraishi, Yuichi, Soulette, Cameron M., Urban, Lara, Greger, Liliana, Li, Siliang, Liu, Dongbing, Perry, Marc D., Xiang, Qian, Zhang, Fan, Zhang, Junjun, Bailey, Peter, Erkek, Serap, Hoadley, Katherine A., Hou, Yong, Huska, Matthew R., Kilpinen, Helena, Korbel, Jan O., Marin, Maximillian G., Markowski, Julia, Nandi, Tannistha, Pan-Hammarström, Qiang, Pedamallu, Chandra Sekhar, Siebert, Reiner, Stark, Stefan G., Su, Hong, Tan, Patrick, Waszak, Sebastian M., Yung, Christina, Zhu, Shida, Awadalla, Philip, Creighton, Chad J., Meyerson, Matthew, Ouellette, B. F. Francis, Wu, Kui, Yang, Huanming, Brazma, Alvis, Brooks, Angela N., Göke, Jonathan, Rätsch, Gunnar, Schwarz, Roland F., Stegle, Oliver, Zhang, Zemin
Published in Nature (London) (16.02.2023)
Published in Nature (London) (16.02.2023)
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Journal Article
Phylogenetic Quantification of Intratumor Heterogeneity
Watkins, Thomas B K, Schwarz, Roland F
Published in Cold Spring Harbor perspectives in medicine (01.04.2018)
Published in Cold Spring Harbor perspectives in medicine (01.04.2018)
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Journal Article
covRNA: discovering covariate associations in large-scale gene expression data
Urban, Lara, Remmele, Christian W, Dittrich, Marcus, Schwarz, Roland F, Müller, Tobias
Published in BMC research notes (24.02.2020)
Published in BMC research notes (24.02.2020)
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Journal Article
ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments
Schwarz, Roland F, Tamuri, Asif U, Kultys, Marek, King, James, Godwin, James, Florescu, Ana M, Schultz, Jörg, Goldman, Nick
Published in Nucleic acids research (05.05.2016)
Published in Nucleic acids research (05.05.2016)
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Comparative Genome Biology of a Serogroup B Carriage and Disease Strain Supports a Polygenic Nature of Meningococcal Virulence
JOSEPH, Biju, SCHNEIKER-BEKEL, Susanne, SCHOEN, Christoph, SCHRAMM-GLÜCK, Anja, BLOM, Jochen, CLAUSE, Heike, LINKE, Burkhard, SCHWARZ, Roland F, BECKER, Anke, GOESMANN, Alexander, FROSCH, Matthias
Published in Journal of Bacteriology (01.10.2010)
Published in Journal of Bacteriology (01.10.2010)
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Journal Article
Evolutionary distances in the twilight zone--a rational kernel approach
Schwarz, Roland F, Fletcher, William, Förster, Frank, Merget, Benjamin, Wolf, Matthias, Schultz, Jörg, Markowetz, Florian
Published in PloS one (31.12.2010)
Published in PloS one (31.12.2010)
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Journal Article
Mutational topography reflects clinical neuroblastoma heterogeneity
Rodriguez-Fos, Elias, Planas-Fèlix, Mercè, Burkert, Martin, Puiggròs, Montserrat, Toedling, Joern, Thiessen, Nina, Blanc, Eric, Szymansky, Annabell, Hertwig, Falk, Ishaque, Naveed, Beule, Dieter, Torrents, David, Eggert, Angelika, Koche, Richard P., Schwarz, Roland F., Haase, Kerstin, Schulte, Johannes H., Henssen, Anton G.
Published in Cell genomics (11.10.2023)
Published in Cell genomics (11.10.2023)
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Journal Article
Diverse epigenetic strategies interact to control epidermal differentiation
Mulder, Klaas W., Wang, Xin, Escriu, Carles, Ito, Yoko, Schwarz, Roland F., Gillis, Jesse, Sirokmány, Gábor, Donati, Giacomo, Uribe-Lewis, Santiago, Pavlidis, Paul, Murrell, Adele, Markowetz, Florian, Watt, Fiona M.
Published in Nature cell biology (01.07.2012)
Published in Nature cell biology (01.07.2012)
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Journal Article
The metabolic background is a global player in Saccharomyces gene expression epistasis
Alam, Mohammad Tauqeer, Zelezniak, Aleksej, Mülleder, Michael, Shliaha, Pavel, Schwarz, Roland, Capuano, Floriana, Vowinckel, Jakob, Radmaneshfar, Elahe, Krüger, Antje, Calvani, Enrica, Michel, Steve, Börno, Stefan, Christen, Stefan, Patil, Kiran Raosaheb, Timmermann, Bernd, Lilley, Kathryn S., Ralser, Markus
Published in Nature microbiology (01.02.2016)
Published in Nature microbiology (01.02.2016)
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