Necrotizing Cutaneous Mucormycosis after a Tornado in Joplin, Missouri, in 2011
Neblett Fanfair, Robyn, Benedict, Kaitlin, Bos, John, Bennett, Sarah D, Lo, Yi-Chun, Adebanjo, Tolu, Etienne, Kizee, Deak, Eszter, Derado, Gordana, Shieh, Wun-Ju, Drew, Clifton, Zaki, Sherif, Sugerman, David, Gade, Lalitha, Thompson, Elizabeth H, Sutton, Deanna A, Engelthaler, David M, Schupp, James M, Brandt, Mary E, Harris, Julie R, Lockhart, Shawn R, Turabelidze, George, Park, Benjamin J
Published in The New England journal of medicine (06.12.2012)
Published in The New England journal of medicine (06.12.2012)
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More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes
Stone, Nathan E, Sidak-Loftis, Lindsay C, Sahl, Jason W, Vazquez, Adam J, Wiggins, Kristin B, Gillece, John D, Hicks, Nathan D, Schupp, James M, Busch, Joseph D, Keim, Paul, Wagner, David M
Published in PloS one (10.10.2016)
Published in PloS one (10.10.2016)
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Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing
Colman, Rebecca E, Schupp, James M, Hicks, Nathan D, Smith, David E, Buchhagen, Jordan L, Valafar, Faramarz, Crudu, Valeriu, Romancenco, Elena, Noroc, Ecaterina, Jackson, Lynn, Catanzaro, Donald G, Rodwell, Timothy C, Catanzaro, Antonino, Keim, Paul, Engelthaler, David M
Published in PloS one (13.05.2015)
Published in PloS one (13.05.2015)
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Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter
Sahl, Jason W, Gillece, John D, Schupp, James M, Waddell, Victor G, Driebe, Elizabeth M, Engelthaler, David M, Keim, Paul
Published in PloS one (24.01.2013)
Published in PloS one (24.01.2013)
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Best practices for evaluating single nucleotide variant calling methods for microbial genomics
Olson, Nathan D, Lund, Steven P, Colman, Rebecca E, Foster, Jeffrey T, Sahl, Jason W, Schupp, James M, Keim, Paul, Morrow, Jayne B, Salit, Marc L, Zook, Justin M
Published in Frontiers in genetics (07.07.2015)
Published in Frontiers in genetics (07.07.2015)
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A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens
Sahl, Jason W, Pearson, Talima, Okinaka, Richard, Schupp, James M, Gillece, John D, Heaton, Hannah, Birdsell, Dawn, Hepp, Crystal, Fofanov, Viacheslav, Noseda, Ramón, Fasanella, Antonio, Hoffmaster, Alex, Wagner, David M, Keim, Paul
Published in mBio (27.09.2016)
Published in mBio (27.09.2016)
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High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador
Barragan, Veronica, Chiriboga, Jorge, Miller, Erin, Olivas, Sonora, Birdsell, Dawn, Hepp, Crystal, Hornstra, Heidie, Schupp, James M, Morales, Melba, Gonzalez, Manuel, Reyes, Soraya, de la Cruz, Carmen, Keim, Paul, Hartskeerl, Rudy, Trueba, Gabriel, Pearson, Talima
Published in PLoS neglected tropical diseases (13.09.2016)
Published in PLoS neglected tropical diseases (13.09.2016)
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Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak
Hendriksen, Rene S, Price, Lance B, Schupp, James M, Gillece, John D, Kaas, Rolf S, Engelthaler, David M, Bortolaia, Valeria, Pearson, Talima, Waters, Andrew E, Upadhyay, Bishnu Prasad, Shrestha, Sirjana Devi, Adhikari, Shailaja, Shakya, Geeta, Keim, Paul S, Aarestrup, Frank M
Published in mBio (2011)
Published in mBio (2011)
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Journal Article
Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity
Gillece, John D, Schupp, James M, Balajee, S Arunmozhi, Harris, Julie, Pearson, Talima, Yan, Yongpan, Keim, Paul, DeBess, Emilio, Marsden-Haug, Nicola, Wohrle, Ron, Engelthaler, David M, Lockhart, Shawn R
Published in PloS one (07.12.2011)
Published in PloS one (07.12.2011)
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Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus
Driebe, Elizabeth M, Sahl, Jason W, Roe, Chandler, Bowers, Jolene R, Schupp, James M, Gillece, John D, Kelley, Erin, Price, Lance B, Pearson, Talima R, Hepp, Crystal M, Brzoska, Pius M, Cummings, Craig A, Furtado, Manohar R, Andersen, Paal S, Stegger, Marc, Engelthaler, David M, Keim, Paul S
Published in PloS one (10.07.2015)
Published in PloS one (10.07.2015)
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Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage
Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Published in Nature communications (26.11.2014)
Published in Nature communications (26.11.2014)
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The genome and variation of Bacillus anthracis
Keim, Paul, Gruendike, Jeffrey M., Klevytska, Alexandra M., Schupp, James M., Challacombe, Jean, Okinaka, Richard
Published in Molecular aspects of medicine (01.12.2009)
Published in Molecular aspects of medicine (01.12.2009)
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Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe
Price, Erin P, Seymour, Meagan L, Sarovich, Derek S, Latham, Jennie, Wolken, Spenser R, Mason, Joanne, Vincent, Gemma, Drees, Kevin P, Beckstrom-Sternberg, Stephen M, Phillippy, Adam M, Koren, Sergey, Okinaka, Richard T, Chung, Wai-Kwan, Schupp, James M, Wagner, David M, Vipond, Richard, Foster, Jeffrey T, Bergman, Nicholas H, Burans, James, Pearson, Talima, Brooks, Tim, Keim, Paul
Published in Emerging infectious diseases (01.08.2012)
Published in Emerging infectious diseases (01.08.2012)
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The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers
Sahl, Jason W, Vazquez, Adam J, Hall, Carina M, Busch, Joseph D, Tuanyok, Apichai, Mayo, Mark, Schupp, James M, Lummis, Madeline, Pearson, Talima, Shippy, Kenzie, Colman, Rebecca E, Allender, Christopher J, Theobald, Vanessa, Sarovich, Derek S, Price, Erin P, Hutcheson, Alex, Korlach, Jonas, LiPuma, John J, Ladner, Jason, Lovett, Sean, Koroleva, Galina, Palacios, Gustavo, Limmathurotsakul, Direk, Wuthiekanun, Vanaporn, Wongsuwan, Gumphol, Currie, Bart J, Keim, Paul, Wagner, David M
Published in mBio (20.09.2016)
Published in mBio (20.09.2016)
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Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei
Hall, Carina M, Busch, Joseph D, Shippy, Kenzie, Allender, Christopher J, Kaestli, Mirjam, Mayo, Mark, Sahl, Jason W, Schupp, James M, Colman, Rebecca E, Keim, Paul, Currie, Bart J, Wagner, David M
Published in PloS one (23.11.2015)
Published in PloS one (23.11.2015)
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Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence
Sahl, Jason W, Allender, Christopher J, Colman, Rebecca E, Califf, Katy J, Schupp, James M, Currie, Bart J, Van Zandt, Kristopher E, Gelhaus, H Carl, Keim, Paul, Tuanyok, Apichai
Published in PloS one (24.03.2015)
Published in PloS one (24.03.2015)
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Bacillus anthracis in China and its relationship to worldwide lineages
Simonson, Tatum S, Okinaka, Richard T, Wang, Bingxiang, Easterday, W Ryan, Huynh, Lynn, U'Ren, Jana M, Dukerich, Meghan, Zanecki, Shaylan R, Kenefic, Leo J, Beaudry, Jodi, Schupp, James M, Pearson, Talima, Wagner, David M, Hoffmaster, Alex, Ravel, Jacques, Keim, Paul
Published in BMC microbiology (15.04.2009)
Published in BMC microbiology (15.04.2009)
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Journal Article
Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis
Price, Erin P, Sarovich, Derek S, Webb, Jessica R, Hall, Carina M, Jaramillo, Sierra A, Sahl, Jason W, Kaestli, Mirjam, Mayo, Mark, Harrington, Glenda, Baker, Anthony L, Sidak-Loftis, Lindsay C, Settles, Erik W, Lummis, Madeline, Schupp, James M, Gillece, John D, Tuanyok, Apichai, Warner, Jeffrey, Busch, Joseph D, Keim, Paul, Currie, Bart J, Wagner, David M
Published in PLoS neglected tropical diseases (14.09.2017)
Published in PLoS neglected tropical diseases (14.09.2017)
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Comparison of TaqMan PCR Assays for Detection of the Melioidosis Agent Burkholderia pseudomallei in Clinical Specimens
KAESTLI, Mirjam, RICHARDSON, Leisha J, PEARSON, Talima, ENGELTHALER, David M, WAGNER, David M, KEIM, Paul S, SCHUPP, James M, CURRIE, Bart J, COLMAN, Rebecca E, TUANYOK, Apichai, PRICED, Erin P, BOWERS, Jolene R, MAYO, Mark, KELLEY, Erin, SEYMOUR, Meagan L, SAROVICH, Derek S
Published in Journal of Clinical Microbiology (01.06.2012)
Published in Journal of Clinical Microbiology (01.06.2012)
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Journal Article
Genome Sequence of “Candidatus Microthrix parvicella” Bio17-1, a Long-Chain-Fatty-Acid-Accumulating Filamentous Actinobacterium from a Biological Wastewater Treatment Plant
MULLER, Emilie E. L, PINEL, Nicolás, KORLACH, Jonas, KEIM, Paul S, WILMES, Paul, GILLECE, John D, SCHUPP, James M, PRICE, Lance B, ENGELTHALER, David M, LEVANTESI, Caterina, TANDOI, Valter, LUONG, Khai, BALIGA, Nitin S
Published in Journal of Bacteriology (01.12.2012)
Published in Journal of Bacteriology (01.12.2012)
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