A comprehensive assessment of RNA-seq protocols for degraded and low-quantity samples
Schuierer, Sven, Carbone, Walter, Knehr, Judith, Petitjean, Virginie, Fernandez, Anita, Sultan, Marc, Roma, Guglielmo
Published in BMC genomics (05.06.2017)
Published in BMC genomics (05.06.2017)
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Journal Article
Single-cell and bulk transcriptomics of the liver reveals potential targets of NASH with fibrosis
Wang, Zhong-Yi, Keogh, Adrian, Waldt, Annick, Cuttat, Rachel, Neri, Marilisa, Zhu, Shanshan, Schuierer, Sven, Ruchti, Alexandra, Crochemore, Christophe, Knehr, Judith, Bastien, Julie, Ksiazek, Iwona, Sánchez-Taltavull, Daniel, Ge, Hui, Wu, Jing, Roma, Guglielmo, Helliwell, Stephen B, Stroka, Deborah, Nigsch, Florian
Published in Scientific reports (29.09.2021)
Published in Scientific reports (29.09.2021)
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Journal Article
Jawsamycin exhibits in vivo antifungal properties by inhibiting Spt14/Gpi3-mediated biosynthesis of glycosylphosphatidylinositol
Fu, Yue, Estoppey, David, Roggo, Silvio, Pistorius, Dominik, Fuchs, Florian, Studer, Christian, Ibrahim, Ashraf S, Aust, Thomas, Grandjean, Frederic, Mihalic, Manuel, Memmert, Klaus, Prindle, Vivian, Richard, Etienne, Riedl, Ralph, Schuierer, Sven, Weber, Eric, Hunziker, Jürg, Petersen, Frank, Tao, Jianshi, Hoepfner, Dominic
Published in Nature communications (07.07.2020)
Published in Nature communications (07.07.2020)
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Journal Article
CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data
Wegmann, Rebekka, Neri, Marilisa, Schuierer, Sven, Bilican, Bilada, Hartkopf, Huyen, Nigsch, Florian, Mapa, Felipa, Waldt, Annick, Cuttat, Rachel, Salick, Max R, Raymond, Joe, Kaykas, Ajamete, Roma, Guglielmo, Keller, Caroline Gubser
Published in Genome Biology (17.07.2019)
Published in Genome Biology (17.07.2019)
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Journal Article
A comparative transcriptomic analysis of replicating and dormant liver stages of the relapsing malaria parasite Plasmodium cynomolgi
Voorberg-van der Wel, Annemarie, Roma, Guglielmo, Gupta, Devendra Kumar, Schuierer, Sven, Nigsch, Florian, Carbone, Walter, Zeeman, Anne-Marie, Lee, Boon Heng, Hofman, Sam O, Faber, Bart W, Knehr, Judith, Pasini, Erica, Kinzel, Bernd, Bifani, Pablo, Bonamy, Ghislain M C, Bouwmeester, Tewis, Kocken, Clemens H M, Diagana, Thierry Tidiane
Published in eLife (07.12.2017)
Published in eLife (07.12.2017)
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Journal Article
Author Correction: Jawsamycin exhibits in vivo antifungal properties by inhibiting Spt14/Gpi3-mediated biosynthesis of glycosylphosphatidylinositol
Fu, Yue, Estoppey, David, Roggo, Silvio, Pistorius, Dominik, Fuchs, Florian, Studer, Christian, Ibrahim, Ashraf S., Aust, Thomas, Grandjean, Frederic, Mihalic, Manuel, Memmert, Klaus, Prindle, Vivian, Richard, Etienne, Riedl, Ralph, Schuierer, Sven, Weber, Eric, Hunziker, Jürg, Petersen, Frank, Tao, Jianshi, Hoepfner, Dominic
Published in Nature communications (31.07.2020)
Published in Nature communications (31.07.2020)
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Journal Article
Evidence for a Functionally Relevant Rocaglamide Binding Site on the eIF4A–RNA Complex
Sadlish, Heather, Galicia-Vazquez, Gabriela, Paris, C. Gregory, Aust, Thomas, Bhullar, Bhupinder, Chang, Lena, Helliwell, Stephen B, Hoepfner, Dominic, Knapp, Britta, Riedl, Ralph, Roggo, Silvio, Schuierer, Sven, Studer, Christian, Porco, John A, Pelletier, Jerry, Movva, N. Rao
Published in ACS chemical biology (19.07.2013)
Published in ACS chemical biology (19.07.2013)
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Journal Article
Transcriptional profiling of hepatocytes infected with the replicative form of the malaria parasite Plasmodium cynomolgi
Mitchell, Gabriel, Roma, Guglielmo, Voorberg-van der Wel, Annemarie, Beibel, Martin, Zeeman, Anne-Marie, Schuierer, Sven, Torres, Laura, Flannery, Erika L, Kocken, Clemens H M, Mikolajczak, Sebastian A, Diagana, Thierry T
Published in Malaria journal (23.12.2022)
Published in Malaria journal (23.12.2022)
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Journal Article
Transcriptomic analysis reveals reduced transcriptional activity in the malaria parasite Plasmodium cynomolgi during progression into dormancy
Bertschi, Nicole L, Voorberg-van der Wel, Annemarie, Zeeman, Anne-Marie, Schuierer, Sven, Nigsch, Florian, Carbone, Walter, Knehr, Judith, Gupta, Devendra K, Hofman, Sam O, van der Werff, Nicole, Nieuwenhuis, Ivonne, Klooster, Els, Faber, Bart W, Flannery, Erika L, Mikolajczak, Sebastian A, Chuenchob, Vorada, Shrestha, Binesh, Beibel, Martin, Bouwmeester, Tewis, Kangwanrangsan, Niwat, Sattabongkot, Jetsumon, Diagana, Thierry T, Kocken, Clemens Hm, Roma, Guglielmo
Published in eLife (27.12.2018)
Published in eLife (27.12.2018)
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Journal Article
Identification of a novel NAMPT inhibitor by CRISPR/Cas9 chemogenomic profiling in mammalian cells
Estoppey, David, Hewett, Jeffrey W, Guy, Chantale T, Harrington, Edmund, Thomas, Jason R, Schirle, Markus, Cuttat, Rachel, Waldt, Annick, Gerrits, Bertran, Yang, Zinger, Schuierer, Sven, Pan, Xuewen, Xie, Kevin, Carbone, Walter, Knehr, Judith, Lindeman, Alicia, Russ, Carsten, Frias, Elizabeth, Hoffman, Gregory R, Varadarajan, Malini, Ramadan, Nadire, Reece-Hoyes, John S, Wang, Qiong, Chen, Xin, McAllister, Gregory, Roma, Guglielmo, Bouwmeester, Tewis, Hoepfner, Dominic
Published in Scientific reports (16.02.2017)
Published in Scientific reports (16.02.2017)
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Journal Article
Identification and Evaluation of Novel Acetolactate Synthase Inhibitors as Antifungal Agents
RICHIE, Daryl L, THOMPSON, Katherine V, DRUMM, Joseph, COTESTA, Simona, EICHENBERGER, Jürg, SCHUIERER, Sven, HARTMANN, Nicole, MOVVA, N. Rao, TALLARICO, John A, RYDER, Neil S, HOEPFNER, Dominic, STUDER, Christian, PRINDLE, Vivian C, AUST, Thomas, RIEDL, Ralph, ESTOPPEY, David, TAO, Jianshi, SEXTON, Jessica A, ZABAWA, Thomas
Published in Antimicrobial Agents and Chemotherapy (01.05.2013)
Published in Antimicrobial Agents and Chemotherapy (01.05.2013)
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Journal Article
A Simple and Efficient CRISPR Technique for Protein Tagging
Zeng, Fanning, Beck, Valerie, Schuierer, Sven, Garnier, Isabelle, Manneville, Carole, Agarinis, Claudia, Morelli, Lapo, Quinn, Lisa, Knehr, Judith, Roma, Guglielmo, Bassilana, Frederic, Nash, Mark
Published in Cells (Basel, Switzerland) (05.12.2020)
Published in Cells (Basel, Switzerland) (05.12.2020)
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Journal Article
Decatransin, a novel natural product inhibiting protein translocation at the Sec61/SecY translocon
Junne, Tina, Wong, Joanne, Studer, Christian, Aust, Thomas, Bauer, Benedikt W., Beibel, Martin, Bhullar, Bhupinder, Bruccoleri, Robert, Eichenberger, Jürg, Estoppey, David, Hartmann, Nicole, Knapp, Britta, Krastel, Philipp, Melin, Nicolas, Oakeley, Edward J., Oberer, Lukas, Riedl, Ralph, Roma, Guglielmo, Schuierer, Sven, Petersen, Frank, Tallarico, John A., Rapoport, Tom A., Spiess, Martin, Hoepfner, Dominic
Published in Journal of cell science (01.01.2015)
Published in Journal of cell science (01.01.2015)
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Journal Article
Fast and highly sensitive full-length single-cell RNA sequencing using FLASH-seq
Hahaut, Vincent, Pavlinic, Dinko, Carbone, Walter, Schuierer, Sven, Balmer, Pierre, Quinodoz, Mathieu, Renner, Magdalena, Roma, Guglielmo, Cowan, Cameron S, Picelli, Simone
Published in Nature biotechnology (01.10.2022)
Published in Nature biotechnology (01.10.2022)
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Journal Article
Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
Cowan, Cameron S., Renner, Magdalena, De Gennaro, Martina, Gross-Scherf, Brigitte, Goldblum, David, Hou, Yanyan, Munz, Martin, Rodrigues, Tiago M., Krol, Jacek, Szikra, Tamas, Cuttat, Rachel, Waldt, Annick, Papasaikas, Panagiotis, Diggelmann, Roland, Patino-Alvarez, Claudia P., Galliker, Patricia, Spirig, Stefan E., Pavlinic, Dinko, Gerber-Hollbach, Nadine, Schuierer, Sven, Srdanovic, Aldin, Balogh, Marton, Panero, Riccardo, Kusnyerik, Akos, Szabo, Arnold, Stadler, Michael B., Orgül, Selim, Picelli, Simone, Hasler, Pascal W., Hierlemann, Andreas, Scholl, Hendrik P.N., Roma, Guglielmo, Nigsch, Florian, Roska, Botond
Published in Cell (17.09.2020)
Published in Cell (17.09.2020)
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Journal Article
YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury
Planas-Paz, Lara, Sun, Tianliang, Pikiolek, Monika, Cochran, Nadire R., Bergling, Sebastian, Orsini, Vanessa, Yang, Zinger, Sigoillot, Frederic, Jetzer, Jasna, Syed, Maryam, Neri, Marilisa, Schuierer, Sven, Morelli, Lapo, Hoppe, Philipp S., Schwarzer, Wibke, Cobos, Carlos M., Alford, John L., Zhang, Le, Cuttat, Rachel, Waldt, Annick, Carballido-Perrig, Nicole, Nigsch, Florian, Kinzel, Bernd, Nicholson, Thomas B., Yang, Yi, Mao, Xiaohong, Terracciano, Luigi M., Russ, Carsten, Reece-Hoyes, John S., Gubser Keller, Caroline, Sailer, Andreas W., Bouwmeester, Tewis, Greenbaum, Linda E., Lugus, Jesse J., Cong, Feng, McAllister, Gregory, Hoffman, Gregory R., Roma, Guglielmo, Tchorz, Jan S.
Published in Cell stem cell (03.07.2019)
Published in Cell stem cell (03.07.2019)
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Journal Article
ZNRF3 and RNF43 cooperate to safeguard metabolic liver zonation and hepatocyte proliferation
Sun, Tianliang, Annunziato, Stefano, Bergling, Sebastian, Sheng, Caibin, Orsini, Vanessa, Forcella, Pascal, Pikiolek, Monika, Kancherla, Venkatesh, Holwerda, Sjoerd, Imanci, Dilek, Wu, Fabian, Meylan, Ludivine Challet, Puehringer, Lea F., Waldt, Annick, Oertli, Mevion, Schuierer, Sven, Terracciano, Luigi M., Reinker, Stefan, Ruffner, Heinz, Bouwmeester, Tewis, Sailer, Andreas W., George, Elizabeth, Roma, Guglielmo, de Weck, Antoine, Piscuoglio, Salvatore, Lohmann, Felix, Naumann, Ulrike, Liberali, Prisca, Cong, Feng, Tchorz, Jan S.
Published in Cell stem cell (07.10.2021)
Published in Cell stem cell (07.10.2021)
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Journal Article
An optimal competitive strategy for walking in streets
ICKING, Christian, KLEIN, Rolf, LANGETEPE, Elmar, SCHUIERER, Sven, SEMRAU, Ines
Published in SIAM journal on computing (2004)
Published in SIAM journal on computing (2004)
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Journal Article
SMN2 splice modulators enhance U1-pre-mRNA association and rescue SMA mice
Palacino, James, Swalley, Susanne E, Song, Cheng, Cheung, Atwood K, Shu, Lei, Zhang, Xiaolu, Van Hoosear, Mailin, Shin, Youngah, Chin, Donovan N, Keller, Caroline Gubser, Beibel, Martin, Renaud, Nicole A, Smith, Thomas M, Salcius, Michael, Shi, Xiaoying, Hild, Marc, Servais, Rebecca, Jain, Monish, Deng, Lin, Bullock, Caroline, McLellan, Michael, Schuierer, Sven, Murphy, Leo, Blommers, Marcel J J, Blaustein, Cecile, Berenshteyn, Frada, Lacoste, Arnaud, Thomas, Jason R, Roma, Guglielmo, Michaud, Gregory A, Tseng, Brian S, Porter, Jeffery A, Myer, Vic E, Tallarico, John A, Hamann, Lawrence G, Curtis, Daniel, Fishman, Mark C, Dietrich, William F, Dales, Natalie A, Sivasankaran, Rajeev
Published in Nature chemical biology (01.07.2015)
Published in Nature chemical biology (01.07.2015)
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