chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
Schep, Alicia N, Wu, Beijing, Buenrostro, Jason D, Greenleaf, William J
Published in Nature methods (01.10.2017)
Published in Nature methods (01.10.2017)
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Journal Article
Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
Buenrostro, Jason D., Corces, M. Ryan, Lareau, Caleb A., Wu, Beijing, Schep, Alicia N., Aryee, Martin J., Majeti, Ravindra, Chang, Howard Y., Greenleaf, William J.
Published in Cell (31.05.2018)
Published in Cell (31.05.2018)
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Journal Article
Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility
Denny, Sarah K., Yang, Dian, Chuang, Chen-Hua, Brady, Jennifer J., Lim, Jing Shan, Grüner, Barbara M., Chiou, Shin-Heng, Schep, Alicia N., Baral, Jessika, Hamard, Cécile, Antoine, Martine, Wislez, Marie, Kong, Christina S., Connolly, Andrew J., Park, Kwon-Sik, Sage, Julien, Greenleaf, William J., Winslow, Monte M.
Published in Cell (14.07.2016)
Published in Cell (14.07.2016)
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Journal Article
Unsupervised clustering and epigenetic classification of single cells
Zamanighomi, Mahdi, Lin, Zhixiang, Daley, Timothy, Chen, Xi, Duren, Zhana, Schep, Alicia, Greenleaf, William J, Wong, Wing Hung
Published in Nature communications (20.06.2018)
Published in Nature communications (20.06.2018)
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Journal Article
Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity
Chen, Xingqi, Litzenburger, Ulrike M, Wei, Yuning, Schep, Alicia N, LaGory, Edward L, Choudhry, Hani, Giaccia, Amato J, Greenleaf, William J, Chang, Howard Y
Published in Nature communications (02.11.2018)
Published in Nature communications (02.11.2018)
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Journal Article
Transcript-indexed ATAC-seq for precision immune profiling
Satpathy, Ansuman T, Saligrama, Naresha, Buenrostro, Jason D, Wei, Yuning, Wu, Beijing, Rubin, Adam J, Granja, Jeffrey M, Lareau, Caleb A, Li, Rui, Qi, Yanyan, Parker, Kevin R, Mumbach, Maxwell R, Serratelli, William S, Gennert, David G, Schep, Alicia N, Corces, M Ryan, Khodadoust, Michael S, Kim, Youn H, Khavari, Paul A, Greenleaf, William J, Davis, Mark M, Chang, Howard Y
Published in Nature medicine (01.05.2018)
Published in Nature medicine (01.05.2018)
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Journal Article
Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12
Wong, Garrett T, Bonocora, Richard P, Schep, Alicia N, Beeler, Suzannah M, Lee Fong, Anna J, Shull, Lauren M, Batachari, Lakshmi E, Dillon, Moira, Evans, Ciaran, Becker, Carla J, Bush, Eliot C, Hardin, Johanna, Wade, Joseph T, Stoebel, Daniel M
Published in Journal of bacteriology (01.04.2017)
Published in Journal of bacteriology (01.04.2017)
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Journal Article
INO80 Chromatin Remodeling Coordinates Metabolic Homeostasis with Cell Division
Gowans, Graeme J., Schep, Alicia N., Wong, Ka Man, King, Devin A., Greenleaf, William J., Morrison, Ashby J.
Published in Cell reports (Cambridge) (16.01.2018)
Published in Cell reports (Cambridge) (16.01.2018)
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Journal Article
Transcriptional repression by the proximal exonic region at the human TERT gene
Wong, Terence C., Sokol, Ethan S., Schep, Alicia N., Punjiya, Meera, Tran, Diana A., Allan, Divina, Drewell, Robert A.
Published in Gene (15.10.2011)
Published in Gene (15.10.2011)
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Journal Article
GenomeWide Transcriptional Response to Varying RpoS Levels in Escherichia coli K12
Wong, Garrett T, Bonocora, Richard P, Schep, Alicia N, Beeler, Suzannah M, Lee Fong, Anna J, Shull, Lauren M, Batachari, Lakshmi E, Dillon, Moira, Evans, Ciaran, Becker, Carla J, Bush, Eliot C, Hardin, Johanna, Wade, Joseph T, Stoebel, Daniel M
Published in Journal of bacteriology (01.04.2017)
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Published in Journal of bacteriology (01.04.2017)
Journal Article
Identification and Characterization of Dynein Genes in Tetrahymena
Wilkes, David E., Bennardo, Nicole, Chan, Clarence W.C., Chang, Yu-Loung, Corpuz, Elizabeth O., DuMond, Jennifer, Eboreime, Jordan A., Erickson, Julianna, Hetzel, Jonathan, Heyer, Erin E., Hubenschmidt, Mark J., Kniazeva, Ekaterina, Kuhn, Hallie, Lum, Michelle, Sand, Andrea, Schep, Alicia, Sergeeva, Oksana, Supab, Natt, Townsend, Caroline R., Ryswyk, Liesl Van, Watson, Hadley E., Wiedeman, Alice E., Rajagopalan, Vidyalakshmi, Asai, David J.
Published in Methods in Cell Biology (2009)
Published in Methods in Cell Biology (2009)
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Book Chapter
Journal Article
MANAGING INTERVENTION CHARACTERISTICS FOR REMOTE HEALTH SERVICES
Boulos, Michael Iskander, Schep, Alicia Nathalie, Engberg, David, Townley-Smith, Emma, Kendale, Amar, Kappaganthu, Karthik
Year of Publication 10.12.2020
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Year of Publication 10.12.2020
Patent