Virus Variation Resource - improved response to emergent viral outbreaks
Hatcher, Eneida L, Zhdanov, Sergey A, Bao, Yiming, Blinkova, Olga, Nawrocki, Eric P, Ostapchuck, Yuri, Schäffer, Alejandro A, Brister, J Rodney
Published in Nucleic Acids Research (04.01.2017)
Published in Nucleic Acids Research (04.01.2017)
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Outcome differences by sex in oncology clinical trials
Kammula, Ashwin V., Schäffer, Alejandro A., Rajagopal, Padma Sheila, Kurzrock, Razelle, Ruppin, Eytan
Published in Nature communications (23.03.2024)
Published in Nature communications (23.03.2024)
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Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies
Joehanes, Roby, Zhang, Xiaoling, Huan, Tianxiao, Yao, Chen, Ying, Sai-Xia, Nguyen, Quang Tri, Demirkale, Cumhur Yusuf, Feolo, Michael L, Sharopova, Nataliya R, Sturcke, Anne, Schäffer, Alejandro A, Heard-Costa, Nancy, Chen, Han, Liu, Po-Ching, Wang, Richard, Woodhouse, Kimberly A, Tanriverdi, Kahraman, Freedman, Jane E, Raghavachari, Nalini, Dupuis, Josée, Johnson, Andrew D, O'Donnell, Christopher J, Levy, Daniel, Munson, Peter J
Published in Genome Biology (25.01.2017)
Published in Genome Biology (25.01.2017)
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Inflammatory Bowel Disease and Mutations Affecting the Interleukin-10 Receptor
Glocker, Erik-Oliver, Kotlarz, Daniel, Boztug, Kaan, Gertz, E. Michael, Schäffer, Alejandro A, Noyan, Fatih, Perro, Mario, Diestelhorst, Jana, Allroth, Anna, Murugan, Dhaarini, Hätscher, Nadine, Pfeifer, Dietmar, Sykora, Karl-Walter, Sauer, Martin, Kreipe, Hans, Lacher, Martin, Nustede, Rainer, Woellner, Cristina, Baumann, Ulrich, Salzer, Ulrich, Koletzko, Sibylle, Shah, Neil, Segal, Anthony W, Sauerbrey, Axel, Buderus, Stephan, Snapper, Scott B, Grimbacher, Bodo, Klein, Christoph
Published in The New England journal of medicine (19.11.2009)
Published in The New England journal of medicine (19.11.2009)
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The tumour microenvironment shapes innate lymphoid cells in patients with hepatocellular carcinoma
Heinrich, Bernd, Gertz, E Michael, Schäffer, Alejandro A, Craig, Amanda, Ruf, Benjamin, Subramanyam, Varun, McVey, John C, Diggs, Laurence P, Heinrich, Sophia, Rosato, Umberto, Ma, Chi, Yan, Chunhua, Hu, Ying, Zhao, Yongmei, Shen, Tsai-Wei, Kapoor, Veena, Telford, William, Kleiner, David E, Stovroff, Merril K, Dhani, Harmeet S, Kang, Jiman, Fishbein, Thomas, Wang, Xin Wei, Ruppin, E, Kroemer, Alexander, Greten, Tim F, Korangy, Firouzeh
Published in Gut (01.06.2022)
Published in Gut (01.06.2022)
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A deep learning approach reveals unexplored landscape of viral expression in cancer
Elbasir, Abdurrahman, Ye, Ying, Schäffer, Daniel E., Hao, Xue, Wickramasinghe, Jayamanna, Tsingas, Konstantinos, Lieberman, Paul M., Long, Qi, Morris, Quaid, Zhang, Rugang, Schäffer, Alejandro A., Auslander, Noam
Published in Nature communications (11.02.2023)
Published in Nature communications (11.02.2023)
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Haploinsufficiency of the NF-κB1 Subunit p50 in Common Variable Immunodeficiency
Fliegauf, Manfred, L. Bryant, Vanessa, Frede, Natalie, Slade, Charlotte, Woon, See-Tarn, Lehnert, Klaus, Winzer, Sandra, Bulashevska, Alla, Scerri, Thomas, Leung, Euphemia, Jordan, Anthony, Keller, Baerbel, de Vries, Esther, Cao, Hongzhi, Yang, Fang, Schäffer, Alejandro A., Warnatz, Klaus, Browett, Peter, Douglass, Jo, Ameratunga, Rohan V., van der Meer, Jos W.M., Grimbacher, Bodo
Published in American journal of human genetics (03.09.2015)
Published in American journal of human genetics (03.09.2015)
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The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective
Ahmadi, Saba, Sukprasert, Pattara, Vegesna, Rahulsimham, Sinha, Sanju, Schischlik, Fiorella, Artzi, Natalie, Khuller, Samir, Schäffer, Alejandro A., Ruppin, Eytan
Published in Nature communications (25.03.2022)
Published in Nature communications (25.03.2022)
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Database indexing for production MegaBLAST searches
Morgulis, Aleksandr, Coulouris, George, Raytselis, Yan, Madden, Thomas L., Agarwala, Richa, Schäffer, Alejandro A.
Published in Bioinformatics (15.08.2008)
Published in Bioinformatics (15.08.2008)
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Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes
Witzel, Maximilian, Petersheim, Daniel, Fan, Yanxin, Bahrami, Ehsan, Racek, Tomas, Rohlfs, Meino, Puchałka, Jacek, Mertes, Christian, Gagneur, Julien, Ziegenhain, Christoph, Enard, Wolfgang, Stray-Pedersen, Asbjørg, Arkwright, Peter D, Abboud, Miguel R, Pazhakh, Vahid, Lieschke, Graham J, Krawitz, Peter M, Dahlhoff, Maik, Schneider, Marlon R, Wolf, Eckhard, Horny, Hans-Peter, Schmidt, Heinrich, Schäffer, Alejandro A, Klein, Christoph
Published in Nature genetics (01.05.2017)
Published in Nature genetics (01.05.2017)
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Domain enhanced lookup time accelerated BLAST
Boratyn, Grzegorz M, Schäffer, Alejandro A, Agarwala, Richa, Altschul, Stephen F, Lipman, David J, Madden, Thomas L
Published in Biology direct (17.04.2012)
Published in Biology direct (17.04.2012)
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Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST
Gertz, E Michael, Yu, Yi-Kuo, Agarwala, Richa, Schäffer, Alejandro A, Altschul, Stephen F
Published in BMC biology (07.12.2006)
Published in BMC biology (07.12.2006)
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Identification of drugs associated with reduced severity of COVID-19 - a case-control study in a large population
Israel, Ariel, Schäffer, Alejandro A, Cicurel, Assi, Cheng, Kuoyuan, Sinha, Sanju, Schiff, Eyal, Feldhamer, Ilan, Tal, Ameer, Lavie, Gil, Ruppin, Eytan
Published in eLife (27.07.2021)
Published in eLife (27.07.2021)
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Deleterious Mutations in LRBA Are Associated with a Syndrome of Immune Deficiency and Autoimmunity
Lopez-Herrera, Gabriela, Tampella, Giacomo, Pan-Hammarström, Qiang, Herholz, Peer, Trujillo-Vargas, Claudia M., Phadwal, Kanchan, Simon, Anna Katharina, Moutschen, Michel, Etzioni, Amos, Mory, Adi, Srugo, Izhak, Melamed, Doron, Hultenby, Kjell, Liu, Chonghai, Baronio, Manuela, Vitali, Massimiliano, Philippet, Pierre, Dideberg, Vinciane, Aghamohammadi, Asghar, Rezaei, Nima, Enright, Victoria, Du, Likun, Salzer, Ulrich, Eibel, Hermann, Pfeifer, Dietmar, Veelken, Hendrik, Stauss, Hans, Lougaris, Vassilios, Plebani, Alessandro, Gertz, E. Michael, Schäffer, Alejandro A., Hammarström, Lennart, Grimbacher, Bodo
Published in American journal of human genetics (08.06.2012)
Published in American journal of human genetics (08.06.2012)
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Large-Scale Study of Antibody Titer Decay following BNT162b2 mRNA Vaccine or SARS-CoV-2 Infection
Israel, Ariel, Shenhar, Yotam, Green, Ilan, Merzon, Eugene, Golan-Cohen, Avivit, Schäffer, Alejandro A, Ruppin, Eytan, Vinker, Shlomo, Magen, Eli
Published in Vaccines (Basel) (31.12.2021)
Published in Vaccines (Basel) (31.12.2021)
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The phenotype of human STK4 deficiency
Abdollahpour, Hengameh, Appaswamy, Giridharan, Kotlarz, Daniel, Diestelhorst, Jana, Beier, Rita, Schäffer, Alejandro A., Gertz, E. Michael, Schambach, Axel, Kreipe, Hans H., Pfeifer, Dietmar, Engelhardt, Karin R., Rezaei, Nima, Grimbacher, Bodo, Lohrmann, Sabine, Sherkat, Roya, Klein, Christoph
Published in Blood (12.04.2012)
Published in Blood (12.04.2012)
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Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data
Lei, Haoyun, Gertz, E Michael, Schäffer, Alejandro A, Fu, Xuecong, Tao, Yifeng, Heselmeyer-Haddad, Kerstin, Torres, Irianna, Li, Guibo, Xu, Liqin, Hou, Yong, Wu, Kui, Shi, Xulian, Dean, Michael, Ried, Thomas, Schwartz, Russell
Published in Bioinformatics (11.12.2021)
Published in Bioinformatics (11.12.2021)
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