Single-Cell Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid Populations across Individuals and Species
Zilionis, Rapolas, Engblom, Camilla, Pfirschke, Christina, Savova, Virginia, Zemmour, David, Saatcioglu, Hatice D., Krishnan, Indira, Maroni, Giorgia, Meyerovitz, Claire V., Kerwin, Clara M., Choi, Sun, Richards, William G., De Rienzo, Assunta, Tenen, Daniel G., Bueno, Raphael, Levantini, Elena, Pittet, Mikael J., Klein, Allon M.
Published in Immunity (Cambridge, Mass.) (21.05.2019)
Published in Immunity (Cambridge, Mass.) (21.05.2019)
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Journal Article
Syntax encodes information structure: Evidence from on-line reading comprehension
Brown, Meredith, Savova, Virginia, Gibson, Edward
Published in Journal of memory and language (01.01.2012)
Published in Journal of memory and language (01.01.2012)
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Journal Article
A marker gene-based method for identifying the cell-type of origin from single-cell RNA sequencing data
Nouri, Nima, Gaglia, Giorgio, Kurlovs, Andre H., de Rinaldis, Emanuele, Savova, Virginia
Published in MethodsX (01.01.2023)
Published in MethodsX (01.01.2023)
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Journal Article
Somatic Cell Fusions Reveal Extensive Heterogeneity in Basal-like Breast Cancer
Su, Ying, Subedee, Ashim, Bloushtain-Qimron, Noga, Savova, Virginia, Krzystanek, Marcin, Li, Lewyn, Marusyk, Andriy, Tabassum, Doris P., Zak, Alexander, Flacker, Mary Jo, Li, Mei, Lin, Jessica J., Sukumar, Saraswati, Suzuki, Hiromu, Long, Henry, Szallasi, Zoltan, Gimelbrant, Alexander, Maruyama, Reo, Polyak, Kornelia
Published in Cell reports (Cambridge) (16.06.2015)
Published in Cell reports (Cambridge) (16.06.2015)
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Journal Article
Chromatin signature of widespread monoallelic expression
Nag, Anwesha, Savova, Virginia, Fung, Ho-Lim, Miron, Alexander, Yuan, Guo-Cheng, Zhang, Kun, Gimelbrant, Alexander A
Published in eLife (31.12.2013)
Published in eLife (31.12.2013)
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Journal Article
Single-cell barcoding and sequencing using droplet microfluidics
Zilionis, Rapolas, Nainys, Juozas, Veres, Adrian, Savova, Virginia, Zemmour, David, Klein, Allon M, Mazutis, Linas
Published in Nature protocols (01.01.2017)
Published in Nature protocols (01.01.2017)
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Journal Article
High prevalence of clonal monoallelic expression
Vigneau, Sébastien, Vinogradova, Svetlana, Savova, Virginia, Gimelbrant, Alexander
Published in Nature genetics (01.09.2018)
Published in Nature genetics (01.09.2018)
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Journal Article
Scaling up single-cell RNA-seq data analysis with CellBridge workflow
Nouri, Nima, Kurlovs, Andre H, Gaglia, Giorgio, de Rinaldis, Emanuele, Savova, Virginia
Published in Bioinformatics (Oxford, England) (01.12.2023)
Published in Bioinformatics (Oxford, England) (01.12.2023)
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Journal Article
Microglia ferroptosis is regulated by SEC24B and contributes to neurodegeneration
Ryan, Sean K, Zelic, Matija, Han, Yingnan, Teeple, Erin, Chen, Luoman, Sadeghi, Mahdiar, Shankara, Srinivas, Guo, Lilu, Li, Cong, Pontarelli, Fabrizio, Jensen, Elizabeth H, Comer, Ashley L, Kumar, Dinesh, Zhang, Mindy, Gans, Joseph, Zhang, Bailin, Proto, Jonathan D, Saleh, Jacqueline, Dodge, James C, Savova, Virginia, Rajpal, Deepak, Ofengeim, Dimitry, Hammond, Timothy R
Published in Nature neuroscience (01.01.2023)
Published in Nature neuroscience (01.01.2023)
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Journal Article
dbMAE: the database of autosomal monoallelic expression
Savova, Virginia, Patsenker, Jon, Vigneau, Sébastien, Gimelbrant, Alexander A
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Journal Article
Additive efficacy of a bispecific anti-TNF/IL-6 nanobody compound in translational models of rheumatoid arthritis
Biesemann, Nadine, Margerie, Daniel, Asbrand, Christian, Rehberg, Markus, Savova, Virginia, Agueusop, Inoncent, Klemmer, Daniel, Ding-Pfennigdorff, Danping, Schwahn, Uwe, Dudek, Markus, Heyninck, Karen, De Tavernier, Evelyn, Cornelis, Sigrid, Kohlmann, Markus, Nestle, Frank O, Herrmann, Matthias
Published in Science translational medicine (01.02.2023)
Published in Science translational medicine (01.02.2023)
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Journal Article
An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples
Hanamsagar, Richa, Reizis, Timothy, Chamberlain, Mathew, Marcus, Robert, Nestle, Frank O, de Rinaldis, Emanuele, Savova, Virginia
Published in Scientific reports (10.02.2020)
Published in Scientific reports (10.02.2020)
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Journal Article
Using single nuclear RNAseq to assess impact of AAV-ARSA gene therapy on oligodendrocyte populations
Huang, Yinyin, Ramachandran, Shyam, Ayloo, Swathi, Ardinger, Jeffery, Liu, Dongyu, Gans, Joseph, Madden, Stephen L., Gaglia, Giorgio, Teeple, Erin, Nouri, Nima, Goulet, Martin, Mueller, Christian, Savova, Virginia
Published in Molecular genetics and metabolism (01.02.2023)
Published in Molecular genetics and metabolism (01.02.2023)
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Journal Article
High prevalence of clonal monoallelic expression/Reply
Vigneau, Sébastien, Vinogradova, Svetlana, Savova, Virginia, Gimelbrant, Alexander, Reinius, Björn, Sandberg, Rickard
Published in Nature genetics (01.09.2018)
Published in Nature genetics (01.09.2018)
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Journal Article
Molecular Features and Stages of Pulmonary Fibrosis Driven by Type 2 Inflammation
Mattoo, Hamid, Bangari, Dinesh S, Cummings, Sheila, Humulock, Zachary, Habiel, David, Xu, Ethan Y, Pate, Nathan, Resnick, Robert, Savova, Virginia, Qian, George, Beil, Christian, Rao, Ercole, Nestle, Frank O, Bryce, Paul J, Subramaniam, Arun
Published in American journal of respiratory cell and molecular biology (01.10.2023)
Published in American journal of respiratory cell and molecular biology (01.10.2023)
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Journal Article
Genes with monoallelic expression contribute disproportionately to genetic diversity in humans
Savova, Virginia, Chun, Sung, Sohail, Mashaal, McCole, Ruth B, Witwicki, Robert, Gai, Lisa, Lenz, Tobias L, Wu, C-Ting, Sunyaev, Shamil R, Gimelbrant, Alexander A
Published in Nature genetics (01.03.2016)
Published in Nature genetics (01.03.2016)
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Journal Article
A single cell atlas of the tracheal epithelium reveals the CFTR-rich pulmonary ionocyte
Plasschaert, Lindsey W., Žilionis, Rapolas, Choo-Wing, Rayman, Savova, Virginia, Knehr, Judith, Roma, Guglielmo, Klein, Allon M., Jaffe, Aron B.
Published in Nature (London) (01.08.2018)
Published in Nature (London) (01.08.2018)
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