Bacterial Composition of the Human Upper Gastrointestinal Tract Microbiome Is Dynamic and Associated with Genomic Instability in a Barrett's Esophagus Cohort
Gall, Alevtina, Fero, Jutta, McCoy, Connor, Claywell, Brian C, Sanchez, Carissa A, Blount, Patricia L, Li, Xiaohong, Vaughan, Thomas L, Matsen, Frederick A, Reid, Brian J, Salama, Nina R
Published in PloS one (15.06.2015)
Published in PloS one (15.06.2015)
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Evolution of Barrett's esophagus through space and time at single-crypt and whole-biopsy levels
Martinez, Pierre, Mallo, Diego, Paulson, Thomas G, Li, Xiaohong, Sanchez, Carissa A, Reid, Brian J, Graham, Trevor A, Kuhner, Mary K, Maley, Carlo C
Published in Nature communications (23.02.2018)
Published in Nature communications (23.02.2018)
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Extrachromosomal DNA in the cancerous transformation of Barrett's oesophagus
Luebeck, Jens, Ng, Alvin Wei Tian, Galipeau, Patricia C, Li, Xiaohong, Sanchez, Carissa A, Katz-Summercorn, Annalise C, Kim, Hoon, Jammula, Sriganesh, He, Yudou, Lippman, Scott M, Verhaak, Roel G W, Maley, Carlo C, Alexandrov, Ludmil B, Reid, Brian J, Fitzgerald, Rebecca C, Paulson, Thomas G, Chang, Howard Y, Wu, Sihan, Bafna, Vineet, Mischel, Paul S
Published in Nature (London) (27.04.2023)
Published in Nature (London) (27.04.2023)
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NSAIDs modulate CDKN2A, TP53, and DNA content risk for progression to esophageal adenocarcinoma
Galipeau, Patricia C, Li, Xiaohong, Blount, Patricia L, Maley, Carlo C, Sanchez, Carissa A, Odze, Robert D, Ayub, Kamran, Rabinovitch, Peter S, Vaughan, Thomas L, Reid, Brian J
Published in PLoS medicine (01.02.2007)
Published in PLoS medicine (01.02.2007)
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Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression
Paulson, Thomas G, Galipeau, Patricia C, Oman, Kenji M, Sanchez, Carissa A, Kuhner, Mary K, Smith, Lucian P, Hadi, Kevin, Shah, Minita, Arora, Kanika, Shelton, Jennifer, Johnson, Molly, Corvelo, Andre, Maley, Carlo C, Yao, Xiaotong, Sanghvi, Rashesh, Venturini, Elisa, Emde, Anne-Katrin, Hubert, Benjamin, Imielinski, Marcin, Robine, Nicolas, Reid, Brian J, Li, Xiaohong
Published in Nature communications (28.04.2022)
Published in Nature communications (28.04.2022)
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NSAIDs modulate clonal evolution in Barrett's esophagus
Kostadinov, Rumen L, Kuhner, Mary K, Li, Xiaohong, Sanchez, Carissa A, Galipeau, Patricia C, Paulson, Thomas G, Sather, Cassandra L, Srivastava, Amitabh, Odze, Robert D, Blount, Patricia L, Vaughan, Thomas L, Reid, Brian J, Maley, Carlo C
Published in PLoS genetics (01.06.2013)
Published in PLoS genetics (01.06.2013)
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Temporal and Spatial Evolution of Somatic Chromosomal Alterations: A Case-Cohort Study of Barrett's Esophagus
XIAOHONG LI, GALIPEAU, Patricia C, MALEY, Carlo C, SELF, Steven G, VAUGHAN, Thomas L, BLOUNT, Patricia L, REID, Brian J, PAULSON, Thomas G, SANCHEZ, Carissa A, ARNAUDO, Jessica, LIU, Karen, SATHER, Cassandra L, KOSTADINOV, Rumen L, ODZE, Robert D, KUHNER, Mary K
Published in Cancer prevention research (Philadelphia, Pa.) (01.01.2014)
Published in Cancer prevention research (Philadelphia, Pa.) (01.01.2014)
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High Goblet Cell Count Is Inversely Associated with Ploidy Abnormalities and Risk of Adenocarcinoma in Barrett's Esophagus
Srivastava, Amitabh, Golden, Kevin L, Sanchez, Carissa A, Liu, Karen, Fong, Pui Yee, Li, Xiaohong, Cowan, David S, Rabinovitch, Peter S, Reid, Brian J, Blount, Patricia L, Odze, Robert D
Published in PloS one (31.07.2015)
Published in PloS one (31.07.2015)
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Warburg and Crabtree effects in premalignant Barrett's esophagus cell lines with active mitochondria
Suchorolski, Martin T, Paulson, Thomas G, Sanchez, Carissa A, Hockenbery, David, Reid, Brian J
Published in PloS one (27.02.2013)
Published in PloS one (27.02.2013)
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Genetic clonal diversity predicts progression to esophageal adenocarcinoma
Maley, Carlo C, Galipeau, Patricia C, Finley, Jennifer C, Wongsurawat, V Jon, Li, Xiaohong, Sanchez, Carissa A, Paulson, Thomas G, Blount, Patricia L, Risques, Rosa-Ana, Rabinovitch, Peter S, Reid, Brian J
Published in Nature genetics (01.04.2006)
Published in Nature genetics (01.04.2006)
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Within‐patient phylogenetic reconstruction reveals early events in Barrett’s Esophagus
Smith, Lucian P., Yamato, Jon A., Galipeau, Patricia C., Paulson, Thomas G., Li, Xiaohong, Sanchez, Carissa A., Reid, Brian J., Kuhner, Mary K.
Published in Evolutionary applications (01.02.2021)
Published in Evolutionary applications (01.02.2021)
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Chromosomal Instability and Copy Number Alterations in Barrett's Esophagus and Esophageal Adenocarcinoma
PAULSON, Thomas G, MALEY, Carlo C, XIAOHONG LI, HONGZHE LI, SANCHEZ, Carissa A, CHAO, Dennis L, ODZE, Robert D, VAUGHAN, Thomas L, BLOUNT, Patricia L, REID, Brian J
Published in Clinical cancer research (15.05.2009)
Published in Clinical cancer research (15.05.2009)
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Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs
Hadi, Kevin, Yao, Xiaotong, Behr, Julie M, Deshpande, Aditya, Xanthopoulakis, Charalampos, Tian, Huasong, Kudman, Sarah, Rosiene, Joel, Darmofal, Madison, DeRose, Joseph, Mortensen, Rick, Adney, Emily M, Shaiber, Alon, Gajic, Zoran, Sigouros, Michael, Eng, Kenneth, Wala, Jeremiah A, Wrzeszczyński, Kazimierz O, Arora, Kanika, Shah, Minita, Emde, Anne-Katrin, Felice, Vanessa, Frank, Mayu O, Darnell, Robert B, Ghandi, Mahmoud, Huang, Franklin, Dewhurst, Sally, Maciejowski, John, de Lange, Titia, Setton, Jeremy, Riaz, Nadeem, Reis-Filho, Jorge S, Powell, Simon, Knowles, David A, Reznik, Ed, Mishra, Bud, Beroukhim, Rameen, Zody, Michael C, Robine, Nicolas, Oman, Kenji M, Sanchez, Carissa A, Kuhner, Mary K, Smith, Lucian P, Galipeau, Patricia C, Paulson, Thomas G, Reid, Brian J, Li, Xiaohong, Wilkes, David, Sboner, Andrea, Mosquera, Juan Miguel, Elemento, Olivier, Imielinski, Marcin
Published in Cell (01.10.2020)
Published in Cell (01.10.2020)
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Assessment of Esophageal Adenocarcinoma Risk Using Somatic Chromosome Alterations in Longitudinal Samples in Barrett's Esophagus
Li, Xiaohong, Paulson, Thomas G, Galipeau, Patricia C, Sanchez, Carissa A, Liu, Karen, Kuhner, Mary K, Maley, Carlo C, Self, Steven G, Vaughan, Thomas L, Reid, Brian J, Blount, Patricia L
Published in Cancer prevention research (Philadelphia, Pa.) (01.09.2015)
Published in Cancer prevention research (Philadelphia, Pa.) (01.09.2015)
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Non-steroidal anti-inflammatory drugs and risk of neoplastic progression in Barrett's oesophagus: a prospective study
Vaughan, Thomas L, Dong, Linda M, Blount, Patricia L, Ayub, Kamran, Odze, Robert D, Sanchez, Carissa A, Rabinovitch, Peter S, Reid, Brian J
Published in The lancet oncology (01.12.2005)
Published in The lancet oncology (01.12.2005)
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Extent of Low-Grade Dysplasia Is a Risk Factor for the Development of Esophageal Adenocarcinoma in Barrett's Esophagus
SRIVASTAVA, Amitabh, HORNICK, Jason L, XIAOHONG LI, BLOUNT, Patricia L, SANCHEZ, Carissa A, COWAN, David S, AYUB, Kamran, MALEY, Carlo C, REID, Brian J, ODZE, Robert D
Published in The American journal of gastroenterology (01.03.2007)
Published in The American journal of gastroenterology (01.03.2007)
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Journal Article
NSAID use and somatic exomic mutations in Barrett's esophagus
Galipeau, Patricia C, Oman, Kenji M, Paulson, Thomas G, Sanchez, Carissa A, Zhang, Qing, Marty, Jerry A, Delrow, Jeffrey J, Kuhner, Mary K, Vaughan, Thomas L, Reid, Brian J, Li, Xiaohong
Published in Genome medicine (27.02.2018)
Published in Genome medicine (27.02.2018)
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The combination of genetic instability and clonal expansion predicts progression to esophageal adenocarcinoma
MALEY, Carlo C, GALIPEAU, Patricia C, XIAOHONG LI, SANCHEZ, Carissa A, PAULSON, Thomas G, BLOUNT, Patricia L, REID, Brian J
Published in Cancer research (Chicago, Ill.) (15.10.2004)
Published in Cancer research (Chicago, Ill.) (15.10.2004)
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p16 mutation spectrum in the premalignant condition Barrett's esophagus
Paulson, Thomas G, Galipeau, Patricia C, Xu, Lianjun, Kissel, Heather D, Li, Xiaohong, Blount, Patricia L, Sanchez, Carissa A, Odze, Robert D, Reid, Brian J
Published in PloS one (27.11.2008)
Published in PloS one (27.11.2008)
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Selectively advantageous mutations and hitchhikers in neoplasms: P16 lesions are selected in Barrett's esophagus
MALEY, Carlo C, GALIPEAU, Patricia C, XIAOHONG LI, SANCHEZ, Carissa A, PAULSON, Thomas G, REID, Brian J
Published in Cancer research (Chicago, Ill.) (15.05.2004)
Published in Cancer research (Chicago, Ill.) (15.05.2004)
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