Fractional 2'-O-methylation in the ribosomal RNA of Dictyostelium discoideum supports ribosome heterogeneity in Amoebozoa
Diesend, Jan, Birkedal, Ulf, Kjellin, Jonas, Zhang, Jingwen, Jablonski, Kim Philipp, Söderbom, Fredrik, Nielsen, Henrik, Hammann, Christian
Published in Scientific reports (04.02.2022)
Published in Scientific reports (04.02.2022)
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Multi-omics analysis of aggregative multicellularity
Edelbroek, Bart, Westholm, Jakub Orzechowski, Bergquist, Jonas, Söderbom, Fredrik
Published in iScience (20.09.2024)
Published in iScience (20.09.2024)
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Chromosome-level genome assembly and annotation of the social amoeba Dictyostelium firmibasis
Edelbroek, Bart, Kjellin, Jonas, Jerlström-Hultqvist, Jon, Koskiniemi, Sanna, Söderbom, Fredrik
Published in Scientific data (22.06.2024)
Published in Scientific data (22.06.2024)
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Evolution of microRNAs in Amoebozoa and implications for the origin of multicellularity
Edelbroek, Bart, Kjellin, Jonas, Biryukova, Inna, Liao, Zhen, Lundberg, Torgny, Noegel, Angelika A, Eichinger, Ludwig, Friedländer, Marc R, Söderbom, Fredrik
Published in Nucleic acids research (12.04.2024)
Published in Nucleic acids research (12.04.2024)
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ProQ-dependent activation of Salmonella virulence genes mediated by post-transcriptional control of PhoP synthesis
Bergman, Sofia, Andresen, Liis, Kjellin, Jonas, Martinez Burgo, Yolanda, Geiser, Petra, Baars, Sophie, Söderbom, Fredrik, Sellin, Mikael E, Holmqvist, Erik
Published in mSphere (26.03.2024)
Published in mSphere (26.03.2024)
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Investigation of the host transcriptional response to intracellular bacterial infection using Dictyostelium discoideum as a host model
Kjellin, Jonas, Pränting, Maria, Bach, Frauke, Vaid, Roshan, Edelbroek, Bart, Li, Zhiru, Hoeppner, Marc P, Grabherr, Manfred, Isberg, Ralph R, Hagedorn, Monica, Söderbom, Fredrik
Published in BMC genomics (10.12.2019)
Published in BMC genomics (10.12.2019)
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Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas
Kjellin, Jonas, Avesson, Lotta, Reimegård, Johan, Liao, Zhen, Eichinger, Ludwig, Noegel, Angelika, Glöckner, Gernot, Schaap, Pauline, Söderbom, Fredrik
Published in Genome research (01.03.2021)
Published in Genome research (01.03.2021)
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Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans
Vetukuri, Ramesh R, Åsman, Anna K M, Tellgren-Roth, Christian, Jahan, Sultana N, Reimegård, Johan, Fogelqvist, Johan, Savenkov, Eugene, Söderbom, Fredrik, Avrova, Anna O, Whisson, Stephen C, Dixelius, Christina
Published in PloS one (14.12.2012)
Published in PloS one (14.12.2012)
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MicroRNAs in Amoebozoa: deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs
Avesson, Lotta, Reimegård, Johan, Wagner, E Gerhart H, Söderbom, Fredrik
Published in RNA (Cambridge) (01.10.2012)
Published in RNA (Cambridge) (01.10.2012)
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Transcriptional changes in Giardia during host–parasite interactions
Ringqvist, Emma, Avesson, Lotta, Söderbom, Fredrik, Svärd, Staffan G.
Published in International journal for parasitology (01.03.2011)
Published in International journal for parasitology (01.03.2011)
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Sequence and Generation of Mature Ribosomal RNA Transcripts in Dictyostelium discoideum
Boesler, Carsten, Kruse, Janis, Söderbom, Fredrik, Hammann, Christian
Published in The Journal of biological chemistry (20.05.2011)
Published in The Journal of biological chemistry (20.05.2011)
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Characterization of a REG/PA28 Proteasome Activator Homolog in Dictyostelium discoideum Indicates that the Ubiquitin- and ATP-Independent REGγ Proteasome Is an Ancient Nuclear Protease
Masson, Patrick, Lundin, Daniel, Söderbom, Fredrik, Young, Patrick
Published in Eukaryotic Cell (01.06.2009)
Published in Eukaryotic Cell (01.06.2009)
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A Rare Combination of Ribonucleotide Reductases in the Social Amoeba Dictyostelium discoideum
Crona, Mikael, Avesson, Lotta, Sahlin, Margareta, Lundin, Daniel, Hinas, Andrea, Klose, Ralph, Söderbom, Fredrik, Sjöberg, Britt-Marie
Published in The Journal of biological chemistry (22.03.2013)
Published in The Journal of biological chemistry (22.03.2013)
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Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans
VETUKURI, RAMESH R., AVROVA, ANNA O., GRENVILLE-BRIGGS, LAURA J., VAN WEST, PIETER, SÖDERBOM, FREDRIK, SAVENKOV, EUGENE I., WHISSON, STEPHEN C., DIXELIUS, CHRISTINA
Published in Molecular plant pathology (01.10.2011)
Published in Molecular plant pathology (01.10.2011)
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Identification of the Major Spliceosomal RNAs in Dictyostelium discoideum Reveals Developmentally Regulated U2 Variants and Polyadenylated snRNAs
Hinas, Andrea, Larsson, Pontus, Avesson, Lotta, Kirsebom, Leif A, Virtanen, Anders, Söderbom, Fredrik
Published in Eukaryotic Cell (01.06.2006)
Published in Eukaryotic Cell (01.06.2006)
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Silencing of retrotransposons in Dictyostelium by DNA methylation and RNAi
Kuhlmann, Markus, Borisova, Branimira E., Kaller, Markus, Larsson, Pontus, Stach, Dirk, Na, Jianbo, Eichinger, Ludwig, Lyko, Frank, Ambros, Victor, Söderbom, Fredrik, Hammann, Christian, Nellen, Wolfgang
Published in Nucleic acids research (01.01.2005)
Published in Nucleic acids research (01.01.2005)
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Abundant class of non-coding RNA regulates development in the social amoeba Dictyostelium discoideum
Avesson, Lotta, Schumacher, Heiko T, Fechter, Pierre, Romby, Pascale, Hellman, Ulf, Söderbom, Fredrik
Published in RNA biology (01.11.2011)
Published in RNA biology (01.11.2011)
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A host factor supports retrotransposition of the TRE5-A population in Dictyostelium cells by suppressing an Argonaute protein
Schmith, Anika, Spaller, Thomas, Gaube, Friedemann, Fransson, Åsa, Boesler, Benjamin, Ojha, Sandeep, Nellen, Wolfgang, Hammann, Christian, Söderbom, Fredrik, Winckler, Thomas
Published in Mobile DNA (03.09.2015)
Published in Mobile DNA (03.09.2015)
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